AT1G52100

Jacalin-related lectin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000646
Physical Location & Seq
Reverse (-)
19383078 .. 19385602
2525 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G52100.3

Sequence Viewer

Length: 1314 bp
ATGGCCCTCAAGGTGGAAGCTAAAGGTGGAAAGGTAGGGATCCAGTGGGATGATGGATCTGACTATCATGATGTAACAAAGATATATGTACGAGGTGGTCTTGAAGGTATTCAGTTCATCAAGTTTGAGTATGTCAAGGCTGGGAAAAAGGTTATTGGACCAATCCATGGTGCTTCTGGTCGTGGTTTCACAGAGACGTTTGAGATCAACAATTTGGAAAAAGAATATTTGTTATCTATTGAGGGTTACTACAACGCATCTACCGGTGTGATACAATGTCTTCAGTTCATAACTAACAAGAAGACTTATGATCCAATCGGATACAATGAGGGTGCTAGGTTTACACTTAGCGCTAGCAGGAGCAAGATTATTGGGTTTCATGGATTTGCTGACAAGTATCTCAACTCTCTTGGAGCATATTTTATCAAGATTCCTTCAATCCAATCAGCAATCGAAGGTGCTAAAACCACAGGAAAAGGTTTTGATGATGGTGGTGACTACGACGGCATAAGAAAAGTGTACGTTACAACTGATGGCTCTGCAATTAGGCATGTAAGGTTCGACTATGACAAAGCCGGTCAAGTGGAAACTCGTGAGCGCGGGGCGAAGACCGGAACACAACATGAGTTTACGGTCAATCATCCATATGAATATATCACATCTGTGGAGGGAACCTACGCTCATACCCAACCTTACAATTGTGTTGTTCTTACATCGTTAACTTTCAAAACATCAAAAGGAAGAGCCTCTCCAGCGATTGGAAAAGTGACTGGTAGCAAATTCAAGCTGGAGAGACAAGGTGATGCTATTGTTGGGTTCCATGGACGGGTAGGCTCTTGTATTGATGGTATCGGGGTGTATTACGCTCCACTTCCACCTTCTCCTCCTCCTCCAGAGAAACTCCAAGGCCAAGGTGGTGACGGTGGAGATTCTTGGGACGATGGTGCTTTCAAAAATGTGAAGAAGATATATGTAGGACAAGGCGATGTTGGGATTGCTGCAGTCAAATTTGAGTACGAGACTTACACTAGTGAGGTGATTCTGGCAGAAAGACATGGAAAGGAAACATTGCTCGGATACGAAGATGAGTACATTACAGCTGTGGAAGGTTGTCACGATAAAGTAATTGGATCTGAAACTGGAGTTATAACCATGCTTAGGTTCAAGACCAACAAACGTAACTCTCCACCATTTGGACTCGAATCTGCGTTCAGCTTTATACTTGAGAAAGATGGGCACAAGATCGTTGGGTTCCACGGAAAAGCTAGTACCTTGCTTCATCAGATTGGAGTCCATGTCACGGCTATTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin TIR

Protein Analysis

437

Amino Acids

47.66

Weight (kDa)

7.23

Isoelectric Point (pI)

22.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 5 - 140 8.8e-37 Jacalin-like lectin domain
Jacalin PF01419 156 - 287 8.3e-33 Jacalin-like lectin domain
Jacalin PF01419 304 - 366 6.5e-10 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1148
AccB7I CCANNNNNTGG 3 cut(s) 167, 758, 1193
AccII CGCG 1 cut(s) 600
AciI CCGC 1 cut(s) 600
AclWI GGATC 5 cut(s) 34, 47, 64, 305, 1138
AcsI RAATTY 2 cut(s) 779, 1007
AcuI CTGAAG 1 cut(s) 266
AfaI GTAC 5 cut(s) 90, 521, 1016, 1091, 1270
AfeI AGCGCT 1 cut(s) 352
AfiI CCNNNNNNNGG 7 cut(s) 13, 167, 758, 826, 1158, 1193, 1300
AgeI ACCGGT 1 cut(s) 263
AgsI TTSAA 6 cut(s) 104, 438, 727, 784, 952, 1165
AhlI ACTAGT 1 cut(s) 1028
AleI CACNNNNGTG 1 cut(s) 662
AluBI AGCT 5 cut(s) 20, 787, 1100, 1215, 1265
AluI AGCT 5 cut(s) 20, 787, 1100, 1215, 1265
Alw26I GTCTC 3 cut(s) 188, 787, 1013
AlwI GGATC 5 cut(s) 34, 47, 64, 305, 1138
Aor51HI AGCGCT 1 cut(s) 352
AoxI GGCC 2 cut(s) 3, 907
ApeKI GCWGC 1 cut(s) 998
ApoI RAATTY 2 cut(s) 779, 1007
AsiGI ACCGGT 1 cut(s) 263
Asp700I GAANNNNTTC 1 cut(s) 108
AspLEI GCGC 2 cut(s) 353, 600
AspS9I GGNCC 2 cut(s) 4, 158
AsuHPI GGTGA 4 cut(s) 506, 812, 929, 1048
AsuNHI GCTAGC 1 cut(s) 353
AvaII GGWCC 1 cut(s) 158
BaeGI GKGCMC 1 cut(s) 1239
BamHI GGATCC 1 cut(s) 39
BauI CACGAG 1 cut(s) 591
BbsI GAAGAC 3 cut(s) 272, 308, 614
BbvI GCAGC 1 cut(s) 985
BccI CCATC 6 cut(s) 47, 482, 527, 839, 935, 1226
BceAI ACGGC 1 cut(s) 520
BciVI GTATCC 2 cut(s) 314, 1070
BcoDI GTCTC 3 cut(s) 188, 787, 1013
BcuI ACTAGT 1 cut(s) 1028
BfaI CTAG 5 cut(s) 336, 354, 1029, 1266, 1312
BfmI CTRYAG 1 cut(s) 999
BfoI RGCGCY 1 cut(s) 354
BfuI GTATCC 2 cut(s) 314, 1070
BisI GCNGC 1 cut(s) 999
BlsI GCNGC 1 cut(s) 1000
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 2 cut(s) 4, 158
BmiI GGNNCC 4 cut(s) 41, 673, 818, 1253
BmsI GCATC 2 cut(s) 266, 793
BmtI GCTAGC 1 cut(s) 357
BpiI GAAGAC 3 cut(s) 272, 308, 614
BpmI CTGGAG 4 cut(s) 735, 809, 876, 1161
Bpu10I CCTNAGC 1 cut(s) 1157
BpuEI CTTGAG 1 cut(s) 1244
BsaJI CCNNGG 5 cut(s) 166, 820, 904, 910, 1255
BsaWI WCCGGW 2 cut(s) 263, 611
BsaXI ACNNNNNCTCC 2 cut(s) 1281, 1311
Bsc4I CCNNNNNNNGG 7 cut(s) 13, 167, 758, 826, 1158, 1193, 1300
Bse118I RCCGGY 2 cut(s) 263, 575
Bse1I ACTGG 3 cut(s) 43, 775, 1144
Bse3DI GCAATG 1 cut(s) 1067
BseDI CCNNGG 5 cut(s) 166, 820, 904, 910, 1255
BseGI GGATG 2 cut(s) 55, 640
BseLI CCNNNNNNNGG 7 cut(s) 13, 167, 758, 826, 1158, 1193, 1300
BseMI GCAATG 1 cut(s) 1067
BseNI ACTGG 3 cut(s) 43, 775, 1144
BseRI GAGGAG 3 cut(s) 873, 876, 879
BseSI GKGCMC 1 cut(s) 1239
BseXI GCAGC 1 cut(s) 985
BseYI CCCAGC 1 cut(s) 140
Bsh1236I CGCG 1 cut(s) 600
BshFI GGCC 2 cut(s) 5, 909
BshTI ACCGGT 1 cut(s) 263
BsiSI CCGG 3 cut(s) 264, 576, 612
BslFI GGGAC 1 cut(s) 950
BslI CCNNNNNNNGG 7 cut(s) 13, 167, 758, 826, 1158, 1193, 1300
BsmAI GTCTC 3 cut(s) 188, 787, 1013
BsmBI CGTCTC 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 950
BsnI GGCC 2 cut(s) 5, 909
Bsp1286I GDGCHC 1 cut(s) 1239
Bsp143I GATC 6 cut(s) 39, 56, 204, 310, 1130, 1242
Bsp19I CCATGG 2 cut(s) 166, 820
BspACI CCGC 1 cut(s) 600
BspANI GGCC 2 cut(s) 5, 909
BspFNI CGCG 1 cut(s) 600
BspHI TCATGA 1 cut(s) 67
BspLI GGNNCC 4 cut(s) 41, 673, 818, 1253
BspMAI CTGCAG 1 cut(s) 1003
BspOI GCTAGC 1 cut(s) 357
BspPI GGATC 5 cut(s) 34, 47, 64, 305, 1138
BspQI GCTCTTC 1 cut(s) 736
BsrDI GCAATG 1 cut(s) 1067
BsrFI RCCGGY 2 cut(s) 263, 575
BsrI ACTGG 3 cut(s) 43, 775, 1144
BssAI RCCGGY 2 cut(s) 263, 575
BssECI CCNNGG 5 cut(s) 166, 820, 904, 910, 1255
BssMI GATC 6 cut(s) 39, 56, 204, 310, 1130, 1242
BssSI CACGAG 1 cut(s) 591
BssT1I CCWWGG 4 cut(s) 166, 820, 904, 910
Bst2BI CACGAG 1 cut(s) 591
Bst4CI ACNGT 2 cut(s) 634, 923
Bst6I CTCTTC 1 cut(s) 736
BstC8I GCNNGC 1 cut(s) 355
BstDEI CTNAG 2 cut(s) 347, 1157
BstDSI CCRYGG 3 cut(s) 166, 820, 1255
BstF5I GGATG 2 cut(s) 55, 640
BstFNI CGCG 1 cut(s) 600
BstH2I RGCGCY 1 cut(s) 354
BstHHI GCGC 2 cut(s) 353, 600
BstKTI GATC 6 cut(s) 42, 59, 207, 313, 1133, 1245
BstMAI GTCTC 3 cut(s) 188, 787, 1013
BstMBI GATC 6 cut(s) 39, 56, 204, 310, 1130, 1242
BstMWI GCNNNNNNNGC 1 cut(s) 752
BstNSI RCATGY 1 cut(s) 554
BstSFI CTRYAG 1 cut(s) 999
BstSLI GKGCMC 1 cut(s) 1239
BstUI CGCG 1 cut(s) 600
BstV1I GCAGC 1 cut(s) 985
BstV2I GAAGAC 3 cut(s) 272, 308, 614
BstX2I RGATCY 3 cut(s) 39, 56, 1130
BstYI RGATCY 3 cut(s) 39, 56, 1130
BsuI GTATCC 2 cut(s) 314, 1070
BsuRI GGCC 2 cut(s) 5, 909
BtgI CCRYGG 3 cut(s) 166, 820, 1255
BtgZI GCGATG 1 cut(s) 999
BtsCI GGATG 2 cut(s) 55, 640
BtsIMutI CAGTG 1 cut(s) 50
Cac8I GCNNGC 1 cut(s) 355
CciI TCATGA 1 cut(s) 67
CfoI GCGC 2 cut(s) 353, 600
Cfr10I RCCGGY 2 cut(s) 263, 575
Cfr13I GGNCC 2 cut(s) 4, 158
Csp6I GTAC 5 cut(s) 89, 520, 1015, 1090, 1269
CspAI ACCGGT 1 cut(s) 263
CviAII CATG 9 cut(s) 68, 167, 380, 551, 623, 821, 1055, 1153, 1295
CviQI GTAC 5 cut(s) 89, 520, 1015, 1090, 1269
DdeI CTNAG 2 cut(s) 347, 1157
DpnI GATC 6 cut(s) 41, 58, 206, 312, 1132, 1244
DpnII GATC 6 cut(s) 39, 56, 204, 310, 1130, 1242
Eam1104I CTCTTC 1 cut(s) 736
EarI CTCTTC 1 cut(s) 736
Eco130I CCWWGG 4 cut(s) 166, 820, 904, 910
Eco47I GGWCC 1 cut(s) 158
Eco47III AGCGCT 1 cut(s) 352
Eco57I CTGAAG 1 cut(s) 266
EcoT14I CCWWGG 4 cut(s) 166, 820, 904, 910
ErhI CCWWGG 4 cut(s) 166, 820, 904, 910
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 9 cut(s) 71, 170, 383, 554, 626, 824, 1058, 1156, 1298
FaqI GGGAC 1 cut(s) 950
FatI CATG 9 cut(s) 67, 166, 379, 550, 622, 820, 1054, 1152, 1294
FauI CCCGC 1 cut(s) 593
FauNDI CATATG 1 cut(s) 646
Fnu4HI GCNGC 1 cut(s) 999
FokI GGATG 2 cut(s) 62, 627
Fsp4HI GCNGC 1 cut(s) 999
FspBI CTAG 5 cut(s) 336, 354, 1029, 1266, 1312
GlaI GCGC 2 cut(s) 352, 599
GluI GCNGC 1 cut(s) 999
GsaI CCCAGC 1 cut(s) 144
GsuI CTGGAG 4 cut(s) 735, 809, 876, 1161
HaeII RGCGCY 1 cut(s) 354
HaeIII GGCC 2 cut(s) 5, 909
HapII CCGG 3 cut(s) 264, 576, 612
HhaI GCGC 2 cut(s) 353, 600
Hin1II CATG 9 cut(s) 71, 170, 383, 554, 626, 824, 1058, 1156, 1298
Hin6I GCGC 2 cut(s) 351, 598
HinP1I GCGC 2 cut(s) 351, 598
HincII GTYRAC 1 cut(s) 720
HindII GTYRAC 1 cut(s) 720
HinfI GANTC 6 cut(s) 430, 929, 1039, 1197, 1202, 1290
HpaI GTTAAC 1 cut(s) 720
HpaII CCGG 3 cut(s) 264, 576, 612
HphI GGTGA 4 cut(s) 506, 812, 929, 1048
Hpy166II GTNNAC 4 cut(s) 342, 520, 630, 720
Hpy188I TCNGA 5 cut(s) 61, 320, 1076, 1135, 1284
Hpy188III TCNNGA 7 cut(s) 68, 101, 427, 593, 893, 1115, 1165
Hpy8I GTNNAC 4 cut(s) 342, 520, 630, 720
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 5 cut(s) 98, 444, 449, 888, 1100
HpyCH4III ACNGT 2 cut(s) 634, 923
HpyCH4IV ACGT 3 cut(s) 197, 522, 1177
HpyCH4V TGCA 2 cut(s) 542, 1001
HpyF10VI GCNNNNNNNGC 1 cut(s) 752
HpyF3I CTNAG 2 cut(s) 347, 1157
HpySE526I ACGT 3 cut(s) 197, 522, 1177
Hsp92II CATG 9 cut(s) 71, 170, 383, 554, 626, 824, 1058, 1156, 1298
HspAI GCGC 2 cut(s) 351, 598
KspAI GTTAAC 1 cut(s) 720
Kzo9I GATC 6 cut(s) 39, 56, 204, 310, 1130, 1242
LguI GCTCTTC 1 cut(s) 736
LmnI GCTCC 3 cut(s) 360, 413, 871
Lsp1109I GCAGC 1 cut(s) 985
LweI GCATC 2 cut(s) 266, 793
MaeI CTAG 5 cut(s) 336, 354, 1029, 1266, 1312
MaeII ACGT 3 cut(s) 197, 522, 1177
MaeIII GTNAC 9 cut(s) 73, 245, 494, 523, 766, 917, 1112, 1178, 1297
MalI GATC 6 cut(s) 41, 58, 206, 312, 1132, 1244
MboI GATC 6 cut(s) 39, 56, 204, 310, 1130, 1242
MboII GAAGA 7 cut(s) 272, 313, 619, 753, 973, 976, 1094
MfeI CAATTG 1 cut(s) 697
MflI RGATCY 3 cut(s) 39, 56, 1130
MhlI GDGCHC 1 cut(s) 1239
MluCI AATT 6 cut(s) 211, 543, 697, 779, 1007, 1125
MlyI GAGTC 2 cut(s) 1191, 1299
MroXI GAANNNNTTC 1 cut(s) 108
MseI TTAA 1 cut(s) 719
MslI CAYNNNNRTG 2 cut(s) 645, 662
MspA1I CMGCKG 1 cut(s) 1100
MspI CCGG 3 cut(s) 264, 576, 612
MunI CAATTG 1 cut(s) 697
MvnI CGCG 1 cut(s) 600
MwoI GCNNNNNNNGC 1 cut(s) 752
NcoI CCATGG 2 cut(s) 166, 820
NdeI CATATG 1 cut(s) 646
NdeII GATC 6 cut(s) 39, 56, 204, 310, 1130, 1242
NheI GCTAGC 1 cut(s) 353
NlaIII CATG 9 cut(s) 71, 170, 383, 554, 626, 824, 1058, 1156, 1298
NlaIV GGNNCC 4 cut(s) 41, 673, 818, 1253
NmuCI GTSAC 5 cut(s) 494, 766, 917, 1112, 1297
NspI RCATGY 1 cut(s) 554
OliI CACNNNNGTG 1 cut(s) 662
PagI TCATGA 1 cut(s) 67
PciSI GCTCTTC 1 cut(s) 736
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 4 cut(s) 430, 929, 1039, 1202
PflMI CCANNNNNTGG 3 cut(s) 167, 758, 1193
PinAI ACCGGT 1 cut(s) 263
PkrI GCNGC 1 cut(s) 1000
PleI GAGTC 2 cut(s) 1191, 1298
PpsI GAGTC 2 cut(s) 1191, 1298
PsiI TTATAA 1 cut(s) 1148
PspFI CCCAGC 1 cut(s) 140
PspN4I GGNNCC 4 cut(s) 41, 673, 818, 1253
PspPI GGNCC 2 cut(s) 4, 158
PstI CTGCAG 1 cut(s) 1003
PsuI RGATCY 3 cut(s) 39, 56, 1130
PvuII CAGCTG 1 cut(s) 1100
RsaI GTAC 5 cut(s) 90, 521, 1016, 1091, 1270
RsaNI GTAC 5 cut(s) 89, 520, 1015, 1090, 1269
RseI CAYNNNNRTG 2 cut(s) 645, 662
SapI GCTCTTC 1 cut(s) 736
SaqAI TTAA 1 cut(s) 719
SatI GCNGC 1 cut(s) 999
Sau3AI GATC 6 cut(s) 39, 56, 204, 310, 1130, 1242
Sau96I GGNCC 2 cut(s) 4, 158
SchI GAGTC 2 cut(s) 1191, 1299
SduI GDGCHC 1 cut(s) 1239
SfaNI GCATC 2 cut(s) 266, 793
SfcI CTRYAG 1 cut(s) 999
SinI GGWCC 1 cut(s) 158
SmiMI CAYNNNNRTG 2 cut(s) 645, 662
SmlI CTYRAG 2 cut(s) 8, 1223
SmoI CTYRAG 2 cut(s) 8, 1223
SpeI ACTAGT 1 cut(s) 1028
Sse9I AATT 6 cut(s) 211, 543, 697, 779, 1007, 1125
SsiI CCGC 1 cut(s) 600
SspI AATATT 1 cut(s) 227
SspMI CTAG 5 cut(s) 336, 354, 1029, 1266, 1312
StyI CCWWGG 4 cut(s) 166, 820, 904, 910
TaaI ACNGT 2 cut(s) 634, 923
TaiI ACGT 3 cut(s) 200, 525, 1180
TaqI TCGA 3 cut(s) 453, 561, 1200
TasI AATT 6 cut(s) 211, 543, 697, 779, 1007, 1125
TatI WGTACW 1 cut(s) 1089
TfiI GAWTC 4 cut(s) 430, 929, 1039, 1202
Tru1I TTAA 1 cut(s) 719
Tru9I TTAA 1 cut(s) 719
TscAI CASTG 1 cut(s) 50
TseFI GTSAC 5 cut(s) 494, 766, 917, 1112, 1297
TseI GCWGC 1 cut(s) 998
Tsp45I GTSAC 5 cut(s) 494, 766, 917, 1112, 1297
TspDTI ATGAA 5 cut(s) 106, 277, 368, 663, 1268
TspGWI ACGGA 1 cut(s) 1272
TspRI CASTG 1 cut(s) 50
Van91I CCANNNNNTGG 3 cut(s) 167, 758, 1193
VpaK11BI GGWCC 1 cut(s) 158
XapI RAATTY 2 cut(s) 779, 1007
XceI RCATGY 1 cut(s) 554
XcmI CCANNNNNNNNNTGG 3 cut(s) 50, 173, 911
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 5 cut(s) 336, 354, 1029, 1266, 1312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.