AT1G60110

jacalin-related lectin

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
22168424 .. 22170803
2380 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G60110.3

Sequence Viewer

Length: 1797 bp
ATGGCCCAAAGGTTGGAAGCAGAAGGAAATAAGAATTTTAAAGGCAAATCTAAGTGGGATGATGGATCCGACAAAGATGATATAGGAAAAATATCAGTAAGATGTGAAGATGGAGGCATAACGTACATCCGATTCGACTATATCAAGAGTGGACAACCGCAATATAATACATTCCCAGGAAACCCGGGTAGAGGTATCCTCCAGACGTTTGACATTAACCACAAAAATGACGAACATCTTGAATCGGTTGAGGGTTATTACGATCCAAAGTCAGATGCGATTAAAGGACTTCAATTCAAAACCAACATGAGGATTTCCGAACTGATAGGATATGCAAACGATGGTGCTACTAAGTTTTCACTAGCTGTGGAAGGAAAGAAGATCATCGGATTTCACGGAGCATACAACACATACCTTAACTCTCTTGGAGCATACGTTACTTGGATTGTTCCAACTAAATTGAAAGCAAAAGGTGGAAAAGGAGGCAAGGAGTGGAACGATGGAGCCGACCATGAAGGTATTACAAAAATATATGTACGAGGTGGTTATGAGGGTTTACAGTACGTCAAATTCGATTATATCAAGGATGGGCAACAAATATATGGGTCACCCCATGGTGTTAGGGGTAGAGGTTTTACAGAGCTGTTTGAGATTAACCATCTCGACAAGGAATATTTGATTTCTGTTGAAGGCTACTATGACGAAGGGGAATCCGGGGTCATTCAAGGAATTCAATTCAAAACTAATATCAGGACTTCTGAATTGATGGGAGACAACAGAGGTAGGAAATTTTCCCTTGCAGCCAATGGAAAGAAGATTATCGGGTTTCATGGATATGCTGAGAAGAATCTAAACTCTCTTGGAGCATATTTCACAACTTCTCCTTTTACAAAACTGGAAGTTGGTACTACTTCGGCTGATCTTTGGGATGATGGTACTTTTGATGGCATAAGAAATGTTTACATTCACTATGATGGCGATGCTGTATGTTGTGTCGAGGTCGACTATGACAACAAAGGCAAAGTGGAAAAGCGTGAGCATGGAATAATGATTGCACCCTTCATAGAAAGAGGAGAGTTTGTGGTGGACTATCCTAATGAATTTATCACATCTGTGGAGGTGACTATATCAAAACAAAATGATTCGCCAGTTCCGTCATTGACTTCCGAAACAGTTGCGTCATTGACTTTCAAAACATCAAAAGGGAGAACTTCTTCAACATTTGGAAGTCCGGCTACTAAAAAATTTGTGCTTCAGAGCAAAGGTTGTGGCGTTGTTGGGTTCCTTGGACGGTCCAGTTATTATACTTATGCGCTTGGAGCACATTTCTGTCCGTTACCACCTCTTCCTGACGGAGAAAAAGTAGAAGCAAAAGGGGGTGATGGAGGAGCTTCTTGGGACGATGGCCGTTTTGATTGCATTAGAAAAATATACATAGGACACAGCGAAATGGGTATCGCATTCGTCAAGTTTCTCTACGACAAAGACAATAAGGTCGTGGTCGGAGATGATCATGGGAGCAAGACATTACTTGGAGTTGATGAGTTTGAGTTGGAGCATCCAGATGAATACCTTATATCTGTCGAGGGTAGTTATGATGTAGTTGATGGAAGTGAATCTGAAGTTATACGCATGCTTAGGTTCAAGACTAATATGCGTACCTCTCAACTCTTTGGACACGAGACAACATCAAACTTCACACTCCAGAAGGAATGTCACAAGATCGTCGGGTTCCATGGAAAAATAGGTGAGATGCTTCATCAAATTGGGGTCCATGTCCTACCCATTACAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

598

Amino Acids

66.35

Weight (kDa)

5.76

Isoelectric Point (pI)

24.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 53 - 188 1.9e-34 Jacalin-like lectin domain
Jacalin PF01419 200 - 340 6.5e-26 Jacalin-like lectin domain
Jacalin PF01419 353 - 490 1.8e-39 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1493
AccB7I CCANNNNNTGG 1 cut(s) 13
AccI GTMKAC 1 cut(s) 1002
AciI CCGC 1 cut(s) 158
AclWI GGATC 3 cut(s) 60, 73, 257
AcoI YGGCCR 1 cut(s) 1405
AcsI RAATTY 6 cut(s) 34, 569, 729, 788, 1100, 1244
AcuI CTGAAG 2 cut(s) 1238, 1641
AfaI GTAC 6 cut(s) 125, 537, 563, 907, 937, 1660
AfiI CCNNNNNNNGG 3 cut(s) 13, 191, 309
AjnI CCWGG 1 cut(s) 175
AleI CACNNNNGTG 1 cut(s) 1112
AluBI AGCT 3 cut(s) 365, 643, 1391
AluI AGCT 3 cut(s) 365, 643, 1391
Alw21I GWGCWC 1 cut(s) 1324
Alw26I GTCTC 2 cut(s) 765, 1676
AlwI GGATC 3 cut(s) 60, 73, 257
Ama87I CYCGRG 1 cut(s) 184
AoxI GGCC 2 cut(s) 3, 1405
ApeKI GCWGC 1 cut(s) 800
ApoI RAATTY 6 cut(s) 34, 569, 729, 788, 1100, 1244
Asp700I GAANNNNTTC 1 cut(s) 1213
AspLEI GCGC 1 cut(s) 1315
AspS9I GGNCC 3 cut(s) 4, 1293, 1771
AsuC2I CCSGG 3 cut(s) 185, 186, 715
AsuHPI GGTGA 4 cut(s) 600, 1132, 1391, 1760
AvaI CYCGRG 1 cut(s) 184
AvaII GGWCC 2 cut(s) 1293, 1771
BamHI GGATCC 1 cut(s) 65
BarI GAAGNNNNNNTAC 2 cut(s) 1219, 1251
BauI CACGAG 1 cut(s) 1679
Bbv12I GWGCWC 1 cut(s) 1324
BbvI GCAGC 1 cut(s) 812
BceAI ACGGC 1 cut(s) 1392
BcgI CGANNNNNNTGC 2 cut(s) 1157, 1191
BciT130I CCWGG 1 cut(s) 177
BciVI GTATCC 1 cut(s) 206
BclI TGATCA 1 cut(s) 1510
BcnI CCSGG 3 cut(s) 185, 186, 715
BcoDI GTCTC 2 cut(s) 765, 1676
BfaI CTAG 1 cut(s) 362
BfuI GTATCC 1 cut(s) 206
BisI GCNGC 1 cut(s) 801
BlsI GCNGC 1 cut(s) 802
Bme1390I CCNGG 4 cut(s) 177, 185, 186, 715
Bme18I GGWCC 2 cut(s) 1293, 1771
BmeT110I CYCGRG 1 cut(s) 184
BmgT120I GGNCC 3 cut(s) 4, 1293, 1771
BmiI GGNNCC 5 cut(s) 67, 505, 1283, 1733, 1772
BmrFI CCNGG 4 cut(s) 177, 185, 186, 715
BmsI GCATC 4 cut(s) 265, 970, 1567, 1743
BplI GAGNNNNNCTC 2 cut(s) 183, 215
BpmI CTGGAG 2 cut(s) 185, 1688
Bpu10I CCTNAGC 1 cut(s) 1637
BpuMI CCSGG 3 cut(s) 185, 186, 715
BsaJI CCNNGG 6 cut(s) 175, 184, 613, 714, 1285, 1735
BsaXI ACNNNNNCTCC 8 cut(s) 420, 450, 865, 895, 1065, 1095, 1347, 1377
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 191, 309
Bse1I ACTGG 3 cut(s) 900, 1148, 1296
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 6 cut(s) 175, 184, 613, 714, 1285, 1735
BseGI GGATG 5 cut(s) 64, 126, 592, 934, 1558
BseLI CCNNNNNNNGG 3 cut(s) 13, 191, 309
BseMII CTCAG 1 cut(s) 831
BseNI ACTGG 3 cut(s) 900, 1148, 1296
BseRI GAGGAG 2 cut(s) 1086, 1401
BseXI GCAGC 1 cut(s) 812
BshFI GGCC 2 cut(s) 5, 1407
BsiHKAI GWGCWC 1 cut(s) 1324
BsiHKCI CYCGRG 1 cut(s) 184
BsiSI CCGG 3 cut(s) 185, 714, 1232
BslFI GGGAC 1 cut(s) 1412
BslI CCNNNNNNNGG 3 cut(s) 13, 191, 309
BsmAI GTCTC 2 cut(s) 765, 1676
BsmFI GGGAC 1 cut(s) 1412
BsmI GAATGC 1 cut(s) 1460
BsnI GGCC 2 cut(s) 5, 1407
BsoBI CYCGRG 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 1324
Bsp143I GATC 6 cut(s) 65, 262, 381, 919, 1510, 1722
Bsp19I CCATGG 2 cut(s) 613, 1735
BspACI CCGC 1 cut(s) 158
BspANI GGCC 2 cut(s) 5, 1407
BspCNI CTCAG 1 cut(s) 832
BspLI GGNNCC 5 cut(s) 67, 505, 1283, 1733, 1772
BspPI GGATC 3 cut(s) 60, 73, 257
BsrI ACTGG 3 cut(s) 900, 1148, 1296
BssECI CCNNGG 6 cut(s) 175, 184, 613, 714, 1285, 1735
BssMI GATC 6 cut(s) 65, 262, 381, 919, 1510, 1722
BssSI CACGAG 1 cut(s) 1679
BssT1I CCWWGG 3 cut(s) 613, 1285, 1735
Bst2BI CACGAG 1 cut(s) 1679
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 3 cut(s) 561, 1174, 1293
Bst6I CTCTTC 1 cut(s) 1350
BstC8I GCNNGC 1 cut(s) 1634
BstDEI CTNAG 4 cut(s) 51, 351, 840, 1637
BstDSI CCRYGG 2 cut(s) 613, 1735
BstEII GGTNACC 1 cut(s) 606
BstF5I GGATG 5 cut(s) 64, 126, 592, 934, 1558
BstHHI GCGC 1 cut(s) 1315
BstKTI GATC 6 cut(s) 68, 265, 384, 922, 1513, 1725
BstMAI GTCTC 2 cut(s) 765, 1676
BstMBI GATC 6 cut(s) 65, 262, 381, 919, 1510, 1722
BstMWI GCNNNNNNNGC 1 cut(s) 1319
BstNI CCWGG 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 1636
BstPI GGTNACC 1 cut(s) 606
BstSCI CCNGG 4 cut(s) 175, 183, 184, 713
BstV1I GCAGC 1 cut(s) 812
BstX2I RGATCY 1 cut(s) 65
BstYI RGATCY 1 cut(s) 65
BsuI GTATCC 1 cut(s) 206
BsuRI GGCC 2 cut(s) 5, 1407
BtgI CCRYGG 2 cut(s) 613, 1735
BtgZI GCGATG 1 cut(s) 993
BtsCI GGATG 5 cut(s) 64, 126, 592, 934, 1558
Cac8I GCNNGC 1 cut(s) 1634
CfoI GCGC 1 cut(s) 1315
Cfr13I GGNCC 3 cut(s) 4, 1293, 1771
Cfr9I CCCGGG 1 cut(s) 184
CseI GACGC 1 cut(s) 1167
Csp6I GTAC 6 cut(s) 124, 536, 562, 906, 936, 1659
CspCI CAANNNNNGTGG 2 cut(s) 1249, 1284
CviAII CATG 9 cut(s) 307, 512, 614, 830, 1040, 1514, 1633, 1736, 1775
CviQI GTAC 6 cut(s) 124, 536, 562, 906, 936, 1659
DdeI CTNAG 4 cut(s) 51, 351, 840, 1637
DpnI GATC 6 cut(s) 67, 264, 383, 921, 1512, 1724
DpnII GATC 6 cut(s) 65, 262, 381, 919, 1510, 1722
DraI TTTAAA 1 cut(s) 40
DrdI GACNNNNNNGTC 1 cut(s) 1493
DseDI GACNNNNNNGTC 1 cut(s) 1493
EaeI YGGCCR 1 cut(s) 1405
Eam1104I CTCTTC 1 cut(s) 1350
EarI CTCTTC 1 cut(s) 1350
Eco130I CCWWGG 3 cut(s) 613, 1285, 1735
Eco47I GGWCC 2 cut(s) 1293, 1771
Eco57I CTGAAG 2 cut(s) 1238, 1641
Eco88I CYCGRG 1 cut(s) 184
Eco91I GGTNACC 1 cut(s) 606
EcoO65I GGTNACC 1 cut(s) 606
EcoRI GAATTC 1 cut(s) 729
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 3 cut(s) 613, 1285, 1735
ErhI CCWWGG 3 cut(s) 613, 1285, 1735
FaeI CATG 9 cut(s) 310, 515, 617, 833, 1043, 1517, 1636, 1739, 1778
FaqI GGGAC 1 cut(s) 1412
FatI CATG 9 cut(s) 306, 511, 613, 829, 1039, 1513, 1632, 1735, 1774
FbaI TGATCA 1 cut(s) 1510
FblI GTMKAC 1 cut(s) 1002
Fnu4HI GCNGC 1 cut(s) 801
FokI GGATG 5 cut(s) 71, 113, 599, 941, 1545
Fsp4HI GCNGC 1 cut(s) 801
FspBI CTAG 1 cut(s) 362
GlaI GCGC 1 cut(s) 1314
GluI GCNGC 1 cut(s) 801
GsuI CTGGAG 2 cut(s) 185, 1688
HaeIII GGCC 2 cut(s) 5, 1407
HapII CCGG 3 cut(s) 185, 714, 1232
HgaI GACGC 1 cut(s) 1167
HhaI GCGC 1 cut(s) 1315
Hin1II CATG 9 cut(s) 310, 515, 617, 833, 1043, 1517, 1636, 1739, 1778
Hin6I GCGC 1 cut(s) 1313
HinP1I GCGC 1 cut(s) 1313
HincII GTYRAC 1 cut(s) 1003
HindII GTYRAC 1 cut(s) 1003
HinfI GANTC 6 cut(s) 132, 242, 710, 847, 1142, 1616
HpaII CCGG 3 cut(s) 185, 714, 1232
HphI GGTGA 4 cut(s) 600, 1132, 1391, 1760
Hpy166II GTNNAC 5 cut(s) 152, 557, 961, 1003, 1087
Hpy188III TCNNGA 9 cut(s) 145, 202, 239, 662, 751, 1349, 1562, 1645, 1705
Hpy8I GTNNAC 5 cut(s) 152, 557, 961, 1003, 1087
Hpy99I CGWCG 1 cut(s) 1730
HpyAV CCTTC 7 cut(s) 17, 365, 509, 683, 698, 1069, 1702
HpyCH4III ACNGT 3 cut(s) 561, 1174, 1293
HpyCH4IV ACGT 4 cut(s) 122, 206, 435, 564
HpyCH4V TGCA 4 cut(s) 335, 800, 1055, 1419
HpyF10VI GCNNNNNNNGC 1 cut(s) 1319
HpyF3I CTNAG 4 cut(s) 51, 351, 840, 1637
HpySE526I ACGT 4 cut(s) 122, 206, 435, 564
Hsp92II CATG 9 cut(s) 310, 515, 617, 833, 1043, 1517, 1636, 1739, 1778
HspAI GCGC 1 cut(s) 1313
Ksp22I TGATCA 1 cut(s) 1510
Kzo9I GATC 6 cut(s) 65, 262, 381, 919, 1510, 1722
LmnI GCTCC 8 cut(s) 398, 428, 503, 863, 1319, 1388, 1518, 1555
Lsp1109I GCAGC 1 cut(s) 812
LweI GCATC 4 cut(s) 265, 970, 1567, 1743
MaeI CTAG 1 cut(s) 362
MaeII ACGT 4 cut(s) 122, 206, 435, 564
MaeIII GTNAC 5 cut(s) 436, 606, 1120, 1335, 1715
MalI GATC 6 cut(s) 67, 264, 383, 921, 1512, 1724
MboI GATC 6 cut(s) 65, 262, 381, 919, 1510, 1722
MboII GAAGA 6 cut(s) 119, 391, 826, 856, 1206, 1337
MflI RGATCY 1 cut(s) 65
MhlI GDGCHC 1 cut(s) 1324
MmeI TCCRAC 4 cut(s) 93, 476, 1483, 1533
MroXI GAANNNNTTC 1 cut(s) 1213
MseI TTAA 5 cut(s) 39, 216, 282, 417, 654
MslI CAYNNNNRTG 5 cut(s) 225, 834, 972, 1112, 1563
MspI CCGG 3 cut(s) 185, 714, 1232
MspR9I CCNGG 4 cut(s) 177, 185, 186, 715
Mva1269I GAATGC 1 cut(s) 1460
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 1319
NciI CCSGG 3 cut(s) 185, 186, 715
NcoI CCATGG 2 cut(s) 613, 1735
NdeII GATC 6 cut(s) 65, 262, 381, 919, 1510, 1722
NlaIII CATG 9 cut(s) 310, 515, 617, 833, 1043, 1517, 1636, 1739, 1778
NlaIV GGNNCC 5 cut(s) 67, 505, 1283, 1733, 1772
NmuCI GTSAC 3 cut(s) 606, 1120, 1715
NspI RCATGY 1 cut(s) 1636
OliI CACNNNNGTG 1 cut(s) 1112
PaeI GCATGC 1 cut(s) 1636
PcsI WCGNNNNNNNCGW 3 cut(s) 504, 570, 1151
PctI GAATGC 1 cut(s) 1460
PdmI GAANNNNTTC 1 cut(s) 1213
PfeI GAWTC 6 cut(s) 132, 242, 710, 847, 1142, 1616
PflMI CCANNNNNTGG 1 cut(s) 13
PkrI GCNGC 1 cut(s) 802
Psp6I CCWGG 1 cut(s) 175
PspEI GGTNACC 1 cut(s) 606
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 5 cut(s) 67, 505, 1283, 1733, 1772
PspPI GGNCC 3 cut(s) 4, 1293, 1771
PsuI RGATCY 1 cut(s) 65
RsaI GTAC 6 cut(s) 125, 537, 563, 907, 937, 1660
RsaNI GTAC 6 cut(s) 124, 536, 562, 906, 936, 1659
RseI CAYNNNNRTG 5 cut(s) 225, 834, 972, 1112, 1563
SalI GTCGAC 1 cut(s) 1001
SaqAI TTAA 5 cut(s) 39, 216, 282, 417, 654
SatI GCNGC 1 cut(s) 801
Sau3AI GATC 6 cut(s) 65, 262, 381, 919, 1510, 1722
Sau96I GGNCC 3 cut(s) 4, 1293, 1771
ScrFI CCNGG 4 cut(s) 177, 185, 186, 715
SduI GDGCHC 1 cut(s) 1324
SfaNI GCATC 4 cut(s) 265, 970, 1567, 1743
SinI GGWCC 2 cut(s) 1293, 1771
SmaI CCCGGG 1 cut(s) 186
SmiMI CAYNNNNRTG 5 cut(s) 225, 834, 972, 1112, 1563
SphI GCATGC 1 cut(s) 1636
SsiI CCGC 1 cut(s) 158
SspI AATATT 1 cut(s) 674
SspMI CTAG 1 cut(s) 362
StyD4I CCNGG 4 cut(s) 175, 183, 184, 713
StyI CCWWGG 3 cut(s) 613, 1285, 1735
TaaI ACNGT 3 cut(s) 561, 1174, 1293
TaiI ACGT 4 cut(s) 125, 209, 438, 567
TaqI TCGA 6 cut(s) 135, 573, 663, 996, 1002, 1584
TfiI GAWTC 6 cut(s) 132, 242, 710, 847, 1142, 1616
Tru1I TTAA 5 cut(s) 39, 216, 282, 417, 654
Tru9I TTAA 5 cut(s) 39, 216, 282, 417, 654
TseFI GTSAC 3 cut(s) 606, 1120, 1715
TseI GCWGC 1 cut(s) 800
Tsp45I GTSAC 3 cut(s) 606, 1120, 1715
TspDTI ATGAA 6 cut(s) 528, 818, 1051, 1113, 1581, 1748
TspGWI ACGGA 4 cut(s) 411, 1143, 1323, 1368
TspMI CCCGGG 1 cut(s) 184
Van91I CCANNNNNTGG 1 cut(s) 13
VpaK11BI GGWCC 2 cut(s) 1293, 1771
XapI RAATTY 6 cut(s) 34, 569, 729, 788, 1100, 1244
XceI RCATGY 1 cut(s) 1636
XmaI CCCGGG 1 cut(s) 184
XmiI GTMKAC 1 cut(s) 1002
XmnI GAANNNNTTC 1 cut(s) 1213
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.