AT3G16420

Jacalin-related lectin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000646
Physical Location & Seq
Forward (+)
5579290 .. 5581032
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G16420.2

Sequence Viewer

Length: 897 bp
ATGGCCCAAAAGGTGGAAGCACAAGGAGGGAAAGGAGCCAACCTATGGGACGATGGATCGACACATGACGCCGTGACCAAGATTCAGCTCGCAGCAGGCATAGACGGAATTCAATATGTTCAGTTTGATTATGTCAAGAACGGACAACCCGAACAAGCTCCTCTTCGTGGTACCAAAGGCCGTGTTCTCCCAGCTGATCCGTTTGTGATTAACCATCCAGACGAACATCTAGTTTCTGTAGAAGGTTGGTATAGCCCTGAAGGTATCATTCAAGGAATTAAGTTCATCTCCAACAAGAAGACTTCTGATGTCATTGGATCCGATGAGGGTACTCACTTCACTCTACAAGTTAAAGACAAGAAGATCATTGGCTTTCATGGGTCTGCCGGGGGCAATCTTAATTCTCTTGGGGCTTACTTTGCTCCGTTGACTACTACAACTCCGTTGACTCCTGCCAAGCAGCTAACGGCATTTGGTAGTGATGACGGAACTGTATGGGATGATGGTGCTTACGTTGGGGTTAAGAAGGTGTACGTTGGACAAGCCCAAGATGGAATCTCAGCTGTTAAGTTTGTGTACGACAAAAGCCCTGAGGAGGTCACAGGAGAAGAACATGGAAAGAGTACTCTACTCGGATTCGAAGAGTTCGTACTTGACTATCCAAGTGAATACATCACCGCAGTCGATGGCACTTATGATAAAATCTTTGGGAGTGATGGCTCAGTCATAACTATGCTCAGGTTCAAGACTAATAAGCAAACGTCTCCTCCCTTTGGACTTGAAGCTGGCACAGTCTTCGAACTCAAAGAGGAAGGCCACAAGATCGTTGGTTTCCATGGAAGAGCCGATGTTCTGCTCCACAAAATTGGAGTCCATGTTCGTCCTTTATCCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

298

Amino Acids

32.16

Weight (kDa)

5.46

Isoelectric Point (pI)

24.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 5 - 139 2e-31 Jacalin-like lectin domain
Jacalin PF01419 156 - 292 1.5e-41 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 170
AccB1I GGYRCC 1 cut(s) 170
AccB7I CCANNNNNTGG 2 cut(s) 13, 45
AciI CCGC 1 cut(s) 678
AclWI GGATC 4 cut(s) 64, 191, 312, 325
AcsI RAATTY 1 cut(s) 108
AcuI CTGAAG 1 cut(s) 279
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 6 cut(s) 172, 331, 533, 578, 625, 651
AfiI CCNNNNNNNGG 5 cut(s) 13, 45, 167, 595, 773
AgsI TTSAA 4 cut(s) 113, 272, 745, 782
AloI GAACNNNNNNTCC 2 cut(s) 861, 893
AluBI AGCT 6 cut(s) 88, 158, 194, 463, 563, 785
AluI AGCT 6 cut(s) 88, 158, 194, 463, 563, 785
Alw26I GTCTC 1 cut(s) 768
AlwI GGATC 4 cut(s) 64, 191, 312, 325
AoxI GGCC 3 cut(s) 3, 178, 814
ApeKI GCWGC 2 cut(s) 92, 460
ApoI RAATTY 1 cut(s) 108
ArsI GACNNNNNNTTYG 2 cut(s) 855, 887
Asp718I GGTACC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 1 cut(s) 667
AsuII TTCGAA 2 cut(s) 639, 798
AxyI CCTNAGG 1 cut(s) 591
BamHI GGATCC 1 cut(s) 317
BanI GGYRCC 1 cut(s) 170
BarI GAAGNNNNNNTAC 2 cut(s) 633, 665
BbsI GAAGAC 2 cut(s) 305, 787
BbvI GCAGC 2 cut(s) 104, 472
BccI CCATC 6 cut(s) 47, 222, 497, 545, 680, 710
BceAI ACGGC 3 cut(s) 56, 165, 483
BcgI CGANNNNNNTGC 2 cut(s) 778, 812
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 768
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 237
BisI GCNGC 2 cut(s) 93, 461
BlsI GCNGC 2 cut(s) 94, 462
BmcAI AGTACT 1 cut(s) 625
Bme1390I CCNGG 1 cut(s) 388
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 3 cut(s) 37, 172, 319
BmrFI CCNGG 1 cut(s) 388
BpiI GAAGAC 2 cut(s) 305, 787
Bpu10I CCTNAGC 1 cut(s) 737
Bpu14I TTCGAA 2 cut(s) 639, 798
BpuMI CCSGG 1 cut(s) 388
BsaHI GRCGYC 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 387, 835
BsaXI ACNNNNNCTCC 6 cut(s) 424, 454, 751, 781, 861, 891
Bsc4I CCNNNNNNNGG 5 cut(s) 13, 45, 167, 595, 773
Bse21I CCTNAGG 1 cut(s) 591
BseDI CCNNGG 2 cut(s) 387, 835
BseGI GGATG 2 cut(s) 214, 505
BseLI CCNNNNNNNGG 5 cut(s) 13, 45, 167, 595, 773
BseMII CTCAG 4 cut(s) 573, 582, 735, 751
BseRI GAGGAG 3 cut(s) 150, 608, 756
BseXI GCAGC 2 cut(s) 104, 472
BseYI CCCAGC 1 cut(s) 190
BshFI GGCC 3 cut(s) 5, 180, 816
BshNI GGYRCC 1 cut(s) 170
BsiSI CCGG 1 cut(s) 387
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 5 cut(s) 13, 45, 167, 595, 773
BsmAI GTCTC 1 cut(s) 768
BsmBI CGTCTC 1 cut(s) 768
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 3 cut(s) 5, 180, 816
Bsp119I TTCGAA 2 cut(s) 639, 798
Bsp143I GATC 5 cut(s) 56, 196, 317, 363, 822
Bsp19I CCATGG 1 cut(s) 835
BspACI CCGC 1 cut(s) 678
BspANI GGCC 3 cut(s) 5, 180, 816
BspCNI CTCAG 4 cut(s) 572, 583, 734, 750
BspLI GGNNCC 3 cut(s) 37, 172, 319
BspPI GGATC 4 cut(s) 64, 191, 312, 325
BspQI GCTCTTC 1 cut(s) 835
BspT104I TTCGAA 2 cut(s) 639, 798
BspT107I GGYRCC 1 cut(s) 170
BssECI CCNNGG 2 cut(s) 387, 835
BssMI GATC 5 cut(s) 56, 196, 317, 363, 822
BssNI GRCGYC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 835
Bst4CI ACNGT 2 cut(s) 493, 793
Bst6I CTCTTC 3 cut(s) 168, 636, 835
BstACI GRCGYC 1 cut(s) 69
BstBI TTCGAA 2 cut(s) 639, 798
BstC8I GCNNGC 3 cut(s) 90, 97, 787
BstDEI CTNAG 4 cut(s) 559, 591, 721, 737
BstDSI CCRYGG 1 cut(s) 835
BstF5I GGATG 2 cut(s) 214, 505
BstKTI GATC 5 cut(s) 59, 199, 320, 366, 825
BstMAI GTCTC 1 cut(s) 768
BstMBI GATC 5 cut(s) 56, 196, 317, 363, 822
BstMWI GCNNNNNNNGC 1 cut(s) 419
BstSCI CCNGG 1 cut(s) 386
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 2 cut(s) 104, 472
BstV2I GAAGAC 2 cut(s) 305, 787
BstX2I RGATCY 1 cut(s) 317
BstXI CCANNNNNNTGG 1 cut(s) 866
BstYI RGATCY 1 cut(s) 317
Bsu36I CCTNAGG 1 cut(s) 591
BsuRI GGCC 3 cut(s) 5, 180, 816
BtgI CCRYGG 1 cut(s) 835
BtsCI GGATG 2 cut(s) 214, 505
Cac8I GCNNGC 3 cut(s) 90, 97, 787
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 77
Csp6I GTAC 6 cut(s) 171, 330, 532, 577, 624, 650
CviAII CATG 5 cut(s) 65, 377, 614, 836, 875
CviQI GTAC 6 cut(s) 171, 330, 532, 577, 624, 650
DdeI CTNAG 4 cut(s) 559, 591, 721, 737
DpnI GATC 5 cut(s) 58, 198, 319, 365, 824
DpnII GATC 5 cut(s) 56, 196, 317, 363, 822
Eam1104I CTCTTC 3 cut(s) 168, 636, 835
EarI CTCTTC 3 cut(s) 168, 636, 835
Eco130I CCWWGG 1 cut(s) 835
Eco57I CTGAAG 1 cut(s) 279
Eco81I CCTNAGG 1 cut(s) 591
EcoRI GAATTC 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 835
ErhI CCWWGG 1 cut(s) 835
Esp3I CGTCTC 1 cut(s) 768
FaeI CATG 5 cut(s) 68, 380, 617, 839, 878
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FaqI GGGAC 1 cut(s) 62
FatI CATG 5 cut(s) 64, 376, 613, 835, 874
Fnu4HI GCNGC 2 cut(s) 93, 461
FokI GGATG 2 cut(s) 201, 512
Fsp4HI GCNGC 2 cut(s) 93, 461
FspBI CTAG 1 cut(s) 230
GluI GCNGC 2 cut(s) 93, 461
GsaI CCCAGC 1 cut(s) 194
HaeIII GGCC 3 cut(s) 5, 180, 816
HapII CCGG 1 cut(s) 387
HgaI GACGC 1 cut(s) 77
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 5 cut(s) 68, 380, 617, 839, 878
HincII GTYRAC 2 cut(s) 429, 447
HindII GTYRAC 2 cut(s) 429, 447
HinfI GANTC 5 cut(s) 82, 448, 555, 636, 870
HpaII CCGG 1 cut(s) 387
HphI GGTGA 1 cut(s) 667
Hpy166II GTNNAC 4 cut(s) 429, 447, 532, 577
Hpy188I TCNGA 3 cut(s) 307, 322, 635
Hpy188III TCNNGA 3 cut(s) 136, 218, 745
Hpy8I GTNNAC 4 cut(s) 429, 447, 532, 577
HpyAV CCTTC 4 cut(s) 236, 254, 520, 806
HpyCH4III ACNGT 2 cut(s) 493, 793
HpyCH4IV ACGT 3 cut(s) 513, 534, 761
HpyF10VI GCNNNNNNNGC 1 cut(s) 419
HpyF3I CTNAG 4 cut(s) 559, 591, 721, 737
HpySE526I ACGT 3 cut(s) 513, 534, 761
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 5 cut(s) 68, 380, 617, 839, 878
KpnI GGTACC 1 cut(s) 174
Kzo9I GATC 5 cut(s) 56, 196, 317, 363, 822
LguI GCTCTTC 1 cut(s) 835
LmnI GCTCC 4 cut(s) 35, 163, 427, 861
Lsp1109I GCAGC 2 cut(s) 104, 472
MaeI CTAG 1 cut(s) 230
MaeII ACGT 3 cut(s) 513, 534, 761
MaeIII GTNAC 2 cut(s) 73, 598
MalI GATC 5 cut(s) 58, 198, 319, 365, 824
MboI GATC 5 cut(s) 56, 196, 317, 363, 822
MboII GAAGA 7 cut(s) 155, 310, 373, 620, 653, 787, 852
MflI RGATCY 1 cut(s) 317
MluCI AATT 4 cut(s) 108, 276, 400, 864
MlyI GAGTC 2 cut(s) 442, 879
MmeI TCCRAC 2 cut(s) 315, 517
MnlI CCTC 7 cut(s) 20, 171, 319, 586, 589, 777, 802
MseI TTAA 6 cut(s) 210, 279, 351, 399, 522, 567
MslI CAYNNNNRTG 1 cut(s) 731
MspA1I CMGCKG 2 cut(s) 194, 563
MspI CCGG 1 cut(s) 387
MspR9I CCNGG 1 cut(s) 388
MwoI GCNNNNNNNGC 1 cut(s) 419
NciI CCSGG 1 cut(s) 388
NcoI CCATGG 1 cut(s) 835
NdeII GATC 5 cut(s) 56, 196, 317, 363, 822
NlaIII CATG 5 cut(s) 68, 380, 617, 839, 878
NlaIV GGNNCC 3 cut(s) 37, 172, 319
NmuCI GTSAC 2 cut(s) 73, 598
NspV TTCGAA 2 cut(s) 639, 798
PciSI GCTCTTC 1 cut(s) 835
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 645
PfeI GAWTC 3 cut(s) 82, 555, 636
PflMI CCANNNNNTGG 2 cut(s) 13, 45
PkrI GCNGC 2 cut(s) 94, 462
PleI GAGTC 2 cut(s) 442, 878
PpsI GAGTC 2 cut(s) 442, 878
PspFI CCCAGC 1 cut(s) 190
PspN4I GGNNCC 3 cut(s) 37, 172, 319
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 1 cut(s) 317
PvuII CAGCTG 2 cut(s) 194, 563
RsaI GTAC 6 cut(s) 172, 331, 533, 578, 625, 651
RsaNI GTAC 6 cut(s) 171, 330, 532, 577, 624, 650
RseI CAYNNNNRTG 1 cut(s) 731
SapI GCTCTTC 1 cut(s) 835
SaqAI TTAA 6 cut(s) 210, 279, 351, 399, 522, 567
SatI GCNGC 2 cut(s) 93, 461
Sau3AI GATC 5 cut(s) 56, 196, 317, 363, 822
Sau96I GGNCC 1 cut(s) 4
ScaI AGTACT 1 cut(s) 625
SchI GAGTC 2 cut(s) 442, 879
ScrFI CCNGG 1 cut(s) 388
SfcI CTRYAG 1 cut(s) 237
SfuI TTCGAA 2 cut(s) 639, 798
SmiMI CAYNNNNRTG 1 cut(s) 731
Sse9I AATT 4 cut(s) 108, 276, 400, 864
SsiI CCGC 1 cut(s) 678
SspMI CTAG 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 386
StyI CCWWGG 1 cut(s) 835
TaaI ACNGT 2 cut(s) 493, 793
TaiI ACGT 3 cut(s) 516, 537, 764
TaqI TCGA 4 cut(s) 59, 639, 684, 798
TasI AATT 4 cut(s) 108, 276, 400, 864
TatI WGTACW 1 cut(s) 623
TfiI GAWTC 3 cut(s) 82, 555, 636
Tru1I TTAA 6 cut(s) 210, 279, 351, 399, 522, 567
Tru9I TTAA 6 cut(s) 210, 279, 351, 399, 522, 567
TseFI GTSAC 2 cut(s) 73, 598
TseI GCWGC 2 cut(s) 92, 460
Tsp45I GTSAC 2 cut(s) 73, 598
TspDTI ATGAA 2 cut(s) 274, 365
TspGWI ACGGA 6 cut(s) 120, 156, 189, 414, 432, 501
Van91I CCANNNNNTGG 2 cut(s) 13, 45
XapI RAATTY 1 cut(s) 108
XcmI CCANNNNNNNNNTGG 1 cut(s) 824
XspI CTAG 1 cut(s) 230
ZrmI AGTACT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.