Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000818

Physical Location & Seq

Genomic Coordinates Forward (+)

19047672 .. 19050214

Gene Structure 2543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G51380.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGAAGGAACTTTAGATGAAGAGAATCTAGTCTTCGAAACCACCAAAGGTATCAAACCAATCAAGAGTTTCGATGACATGGGGATGAATGATAAAGTTCTTCGCGGCGTTTATGACTACGGTTACAAGAAACCATCTGAGATTCAGCAGAGAGCTTTGGTTCCGATTCTCAAAGGACGAGACGTCATAGCTCAGGCTCAGTCCGGTACTGGTAAAACCTCTATGATTGCTATCTCCGTTTGCCAAATCGTCAACATATCCTCCAGAAAGGTTCAAGTCTTGGTGTTGTCTCCATCAAGAGAGCTGGCTTCACAAACAGAGAAGACTATACAGGCTATTGGGGCACATACCAATATTCAGGCGCATGCTTGCATTGGTGGTAAGAGCATCGGTGAAGATATCAAGAAGCTAGAGCGTGGTGTCCACGCTGTGTCTGGGACACCTGGTCGAGTTTACGATATGATAAAGAGAGGAAGCTTACAAACTAAAGCTGTTAAACTTTTGGTTCTGGATGAATCAGATGAAATGCTGAGTAAAGGTTTGAAAGACCAGATTTATGACGTTTACAGAGCTCTTCCACACGATATTCAGGTTTGCTTGATTTCTGCTACTCTTCCTCAAGAGATTTTGGAGATGACAGAAAAGTTTATGACAGATCCTGTGAGGATTCTTGTGAAGCCTGATGAATTGACTCTTGAAGGAATCAAACAATACTATGTTGATGTTGATAAAGAAGAGTGGAAATTCGATACTCTTTGCGATCTTTATGGAAGACTTACTATTAACCAAGCTATTATCTTCTGCAACACAAGACAAAAGGTTGATTGGCTTACTGAGAAGATGAGGAGTAGCAATTTCATAGTCTCATCAATGCATGGAGACAAACGTCAAAAGGAGAGAGATGATATCATGAACCAGTTTCGGTCATTTAAAAGCCGTGTTTTAATCGCCTCAGATGTATGGGCACGAGGGATCGACGTTCAAACTGTTTCTCATGTCATCAATTATGATATACCCAACAACCCGGAGCTATACATTCATCGTATAGGACGAGCTGGTCGTTTTGGTCGTGAAGGTGTTGCCATTAACTTTGTAAAATCTTCGGATATGAAAGATCTTAAGGATATTGAGCGACATTACGGTACTAAAATCCGCGAGATGCCAGCTGATCTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

392

Amino Acids

44.36

Weight (kDa)

8.11

Isoelectric Point (pI)

32.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	45 - 125	5.2e-06	Type III restriction enzyme, res subunit
DEAD	PF00270	47 - 210	6.5e-42	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51380 AT1G51380 AT1G51380 AT1G51380 AT3G19760
fragaria_vesca	FvH4_4g36800 FvH4_4g36800 FvH4_4g36800 FvH4_6g49811 FvH4_6g49900
malus_domestica	MD09G1053900.v1.1 MD09G1189300.v1.1 MD09G1268200.v1.1 MD09G1268600.v1.1 MD09G1268800.v1.1 MD13G1006800.v1.1 MD15G1056500.v1.1 MD16G1001000.v1.1
prunus_persica	Prupe.1G346100_v2.0.a1 Prupe.3G165200_v2.0.a1
pyrus_communis	pycom111g04510 pycom16g00440
rosa_chinensis	RchiOBHm_Chr0c44g0503461 RchiOBHm_Chr0c44g0503501 RchiOBHm_Chr0c44g0503531 RchiOBHm_Chr0c44g0503561 RchiOBHm_Chr0c44g0503691 RchiOBHm_Chr0c44g0503701 RchiOBHm_Chr0c44g0503721 RchiOBHm_Chr0c44g0503751 RchiOBHm_Chr2g0169961 RchiOBHm_Chr4g0386061 RchiOBHm_Chr4g0386101 RchiOBHm_Chr4g0386151 RchiOBHm_Chr4g0386181 RchiOBHm_Chr4g0386221 RchiOBHm_Chr4g0386241 RchiOBHm_Chr4g0386301 RchiOBHm_Chr4g0386341 RchiOBHm_Chr4g0386361 RchiOBHm_Chr4g0446531
rosa_laevigata	RLG00000005651 RLG00000010170 RLG00000010175 RLG00000021914
rosa_multiflora	Rmu_sc0005526.1_g000001 Rmu_sc0005795.1_g000003 Rmu_sc0013078.1_g000019 Rmu_sc0022031.1_g000001 Rmu_ssc0000389.1_g000007
rosa_roxburghii	Rroxscaffold_5G00333840 Rroxscaffold_5G00386950
rosa_rugosa	Rorug02G0544700 Rorug02G0545100 Rorug04G0372300
rosa_samantha	Rh2AG617000 Rh2AG617300 Rh2CG597900 Rh2DG639700 Rh2DG640100 Rh2DG640400 Rh4AG010700 Rh4AG433900 Rh4BG007600 Rh4BG443100 Rh4DG441700
rosa_wichuraiana	Rw2G051090 Rw4G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1056
AatII	GACGTC	1 cut(s)	186
AccII	CGCG	2 cut(s)	105, 1155
AciI	CCGC	2 cut(s)	105, 1153
AclWI	GGATC	2 cut(s)	650, 980
AcsI	RAATTY	1 cut(s)	743
AcyI	GRCGYC	1 cut(s)	183
AdeI	CACNNNGTG	1 cut(s)	430
AfaI	GTAC	2 cut(s)	208, 1144
AflII	CTTAAG	1 cut(s)	1118
AgsI	TTSAA	4 cut(s)	275, 544, 698, 983
AhdI	GACNNNNNGTC	2 cut(s)	182, 444
AjnI	CCWGG	1 cut(s)	442
Alw21I	GWGCWC	1 cut(s)	574
Alw26I	GTCTC	4 cut(s)	174, 294, 868, 873
AlwI	GGATC	2 cut(s)	650, 980
AlwNI	CAGNNNCTG	1 cut(s)	659
ApoI	RAATTY	1 cut(s)	743
AspLEI	GCGC	1 cut(s)	364
AsuC2I	CCSGG	1 cut(s)	1025
AsuHPI	GGTGA	1 cut(s)	404
AsuII	TTCGAA	1 cut(s)	36
BaeGI	GKGCMC	2 cut(s)	346, 967
BanII	GRGCYC	1 cut(s)	574
BauI	CACGAG	1 cut(s)	966
BbsI	GAAGAC	3 cut(s)	25, 329, 778
Bbv12I	GWGCWC	1 cut(s)	574
BccI	CCATC	2 cut(s)	142, 301
BceAI	ACGGC	1 cut(s)	921
BciT130I	CCWGG	1 cut(s)	444
BcnI	CCSGG	1 cut(s)	1025
BcoDI	GTCTC	4 cut(s)	174, 294, 868, 873
BfaI	CTAG	2 cut(s)	29, 410
BfrI	CTTAAG	1 cut(s)	1118
BglII	AGATCT	1 cut(s)	1114
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
Bme1390I	CCNGG	2 cut(s)	444, 1025
BmeRI	GACNNNNNGTC	2 cut(s)	182, 444
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	2 cut(s)	444, 1025
BmsI	GCATC	2 cut(s)	396, 1149
BoxI	GACNNNNGTC	1 cut(s)	885
BpiI	GAAGAC	3 cut(s)	25, 329, 778
BpmI	CTGGAG	1 cut(s)	247
Bpu10I	CCTNAGC	1 cut(s)	192
Bpu14I	TTCGAA	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	603
BpuMI	CCSGG	1 cut(s)	1025
BsaBI	GATNNNNATC	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	203
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bse1I	ACTGG	2 cut(s)	214, 916
Bse8I	GATNNNNATC	1 cut(s)	230
BseBI	CCWGG	1 cut(s)	444
BseGI	GGATG	2 cut(s)	90, 517
BseJI	GATNNNNATC	1 cut(s)	230
BseMII	CTCAG	6 cut(s)	129, 206, 212, 521, 825, 966
BseNI	ACTGG	2 cut(s)	214, 916
BseRI	GAGGAG	1 cut(s)	859
BseSI	GKGCMC	2 cut(s)	346, 967
Bsh1236I	CGCG	2 cut(s)	105, 1155
BsiHKAI	GWGCWC	1 cut(s)	574
BsiSI	CCGG	2 cut(s)	204, 1025
BslFI	GGGAC	1 cut(s)	451
BsmAI	GTCTC	4 cut(s)	174, 294, 868, 873
BsmBI	CGTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	451
Bsp119I	TTCGAA	1 cut(s)	36
Bsp1286I	GDGCHC	3 cut(s)	346, 574, 967
Bsp143I	GATC	5 cut(s)	655, 760, 972, 1114, 1168
BspACI	CCGC	2 cut(s)	105, 1153
BspCNI	CTCAG	6 cut(s)	130, 205, 211, 522, 826, 965
BspFNI	CGCG	2 cut(s)	105, 1155
BspHI	TCATGA	1 cut(s)	909
BspLI	GGNNCC	1 cut(s)	162
BspPI	GGATC	2 cut(s)	650, 980
BspQI	GCTCTTC	1 cut(s)	579
BspT104I	TTCGAA	1 cut(s)	36
BspTI	CTTAAG	1 cut(s)	1118
BsrI	ACTGG	2 cut(s)	214, 916
BssMI	GATC	5 cut(s)	655, 760, 972, 1114, 1168
BssNI	GRCGYC	1 cut(s)	183
BssSI	CACGAG	1 cut(s)	966
Bst2BI	CACGAG	1 cut(s)	966
Bst2UI	CCWGG	1 cut(s)	444
Bst4CI	ACNGT	3 cut(s)	122, 988, 1142
Bst6I	CTCTTC	4 cut(s)	15, 579, 618, 729
BstACI	GRCGYC	1 cut(s)	183
BstAFI	CTTAAG	1 cut(s)	1118
BstBI	TTCGAA	1 cut(s)	36
BstC8I	GCNNGC	4 cut(s)	306, 366, 370, 1164
BstDEI	CTNAG	6 cut(s)	138, 192, 198, 530, 834, 952
BstF5I	GGATG	2 cut(s)	90, 517
BstFNI	CGCG	2 cut(s)	105, 1155
BstHHI	GCGC	1 cut(s)	364
BstKTI	GATC	5 cut(s)	658, 763, 975, 1117, 1171
BstMAI	GTCTC	4 cut(s)	174, 294, 868, 873
BstMBI	GATC	5 cut(s)	655, 760, 972, 1114, 1168
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNI	CCWGG	1 cut(s)	444
BstNSI	RCATGY	1 cut(s)	368
BstPAI	GACNNNNGTC	1 cut(s)	885
BstSCI	CCNGG	2 cut(s)	442, 1023
BstSLI	GKGCMC	2 cut(s)	346, 967
BstUI	CGCG	2 cut(s)	105, 1155
BstV2I	GAAGAC	3 cut(s)	25, 329, 778
BstX2I	RGATCY	2 cut(s)	655, 1114
BstYI	RGATCY	2 cut(s)	655, 1114
BtsCI	GGATG	2 cut(s)	90, 517
Cac8I	GCNNGC	4 cut(s)	306, 366, 370, 1164
CaiI	CAGNNNCTG	1 cut(s)	659
CciI	TCATGA	1 cut(s)	909
CfoI	GCGC	1 cut(s)	364
CsiI	ACCWGGT	1 cut(s)	442
Csp6I	GTAC	2 cut(s)	207, 1143
CviAII	CATG	5 cut(s)	79, 365, 875, 910, 995
CviQI	GTAC	2 cut(s)	207, 1143
DdeI	CTNAG	6 cut(s)	138, 192, 198, 530, 834, 952
DpnI	GATC	5 cut(s)	657, 762, 974, 1116, 1170
DpnII	GATC	5 cut(s)	655, 760, 972, 1114, 1168
DraI	TTTAAA	1 cut(s)	931
DraIII	CACNNNGTG	1 cut(s)	430
DrdI	GACNNNNNNGTC	1 cut(s)	1056
DriI	GACNNNNNGTC	2 cut(s)	182, 444
DseDI	GACNNNNNNGTC	1 cut(s)	1056
Eam1104I	CTCTTC	4 cut(s)	15, 579, 618, 729
Eam1105I	GACNNNNNGTC	2 cut(s)	182, 444
EarI	CTCTTC	4 cut(s)	15, 579, 618, 729
Ecl136II	GAGCTC	1 cut(s)	572
Eco24I	GRGCYC	1 cut(s)	574
Eco32I	GATATC	2 cut(s)	400, 907
Eco53kI	GAGCTC	1 cut(s)	572
EcoICRI	GAGCTC	1 cut(s)	572
EcoRII	CCWGG	1 cut(s)	442
EcoRV	GATATC	2 cut(s)	400, 907
EcoT22I	ATGCAT	1 cut(s)	876
EcoT38I	GRGCYC	1 cut(s)	574
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	5 cut(s)	82, 368, 878, 913, 998
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	5 cut(s)	78, 364, 874, 909, 994
Fnu4HI	GCNGC	1 cut(s)	106
FokI	GGATG	2 cut(s)	97, 524
FriOI	GRGCYC	1 cut(s)	574
Fsp4HI	GCNGC	1 cut(s)	106
FspBI	CTAG	2 cut(s)	29, 410
GlaI	GCGC	1 cut(s)	363
GluI	GCNGC	1 cut(s)	106
GsuI	CTGGAG	1 cut(s)	247
HapII	CCGG	2 cut(s)	204, 1025
HhaI	GCGC	1 cut(s)	364
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	5 cut(s)	82, 368, 878, 913, 998
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	475
HinfI	GANTC	7 cut(s)	25, 142, 166, 515, 667, 691, 702
HpaII	CCGG	2 cut(s)	204, 1025
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	4 cut(s)	253, 424, 454, 565
Hpy188I	TCNGA	5 cut(s)	139, 165, 520, 955, 1105
Hpy188III	TCNNGA	9 cut(s)	64, 264, 297, 403, 509, 620, 695, 910, 1070
Hpy8I	GTNNAC	4 cut(s)	253, 424, 454, 565
Hpy99I	CGWCG	1 cut(s)	980
HpyAV	CCTTC	2 cut(s)	692, 1067
HpyCH4III	ACNGT	3 cut(s)	122, 988, 1142
HpyCH4IV	ACGT	4 cut(s)	183, 561, 886, 978
HpyCH4V	TGCA	3 cut(s)	372, 804, 874
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	6 cut(s)	138, 192, 198, 530, 834, 952
HpySE526I	ACGT	4 cut(s)	183, 561, 886, 978
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	5 cut(s)	82, 368, 878, 913, 998
HspAI	GCGC	1 cut(s)	362
Kzo9I	GATC	5 cut(s)	655, 760, 972, 1114, 1168
LguI	GCTCTTC	1 cut(s)	579
LmnI	GCTCC	1 cut(s)	1027
LweI	GCATC	2 cut(s)	396, 1149
MabI	ACCWGGT	1 cut(s)	442
MaeI	CTAG	2 cut(s)	29, 410
MaeII	ACGT	4 cut(s)	183, 561, 886, 978
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	5 cut(s)	657, 762, 974, 1116, 1170
MboI	GATC	5 cut(s)	655, 760, 972, 1114, 1168
MflI	RGATCY	2 cut(s)	655, 1114
MhlI	GDGCHC	3 cut(s)	346, 574, 967
MluCI	AATT	4 cut(s)	686, 743, 853, 1003
MlyI	GAGTC	1 cut(s)	685
MnlI	CCTC	8 cut(s)	229, 271, 464, 627, 657, 837, 961, 962
Mph1103I	ATGCAT	1 cut(s)	876
MseI	TTAA	6 cut(s)	495, 783, 930, 944, 1086, 1119
MslI	CAYNNNNRTG	1 cut(s)	83
MspA1I	CMGCKG	1 cut(s)	1166
MspCI	CTTAAG	1 cut(s)	1118
MspI	CCGG	2 cut(s)	204, 1025
MspR9I	CCNGG	2 cut(s)	444, 1025
MvaI	CCWGG	1 cut(s)	444
MvnI	CGCG	2 cut(s)	105, 1155
MwoI	GCNNNNNNNGC	1 cut(s)	341
NciI	CCSGG	1 cut(s)	1025
NdeII	GATC	5 cut(s)	655, 760, 972, 1114, 1168
NlaIII	CATG	5 cut(s)	82, 368, 878, 913, 998
NlaIV	GGNNCC	1 cut(s)	162
NsiI	ATGCAT	1 cut(s)	876
NspI	RCATGY	1 cut(s)	368
NspV	TTCGAA	1 cut(s)	36
PaeI	GCATGC	1 cut(s)	368
PagI	TCATGA	1 cut(s)	909
PciSI	GCTCTTC	1 cut(s)	579
PcsI	WCGNNNNNNNCGW	3 cut(s)	1048, 1057, 1066
PfeI	GAWTC	6 cut(s)	25, 142, 166, 515, 667, 702
PkrI	GCNGC	1 cut(s)	107
PleI	GAGTC	1 cut(s)	685
PpsI	GAGTC	1 cut(s)	685
PshAI	GACNNNNGTC	1 cut(s)	885
Psp124BI	GAGCTC	1 cut(s)	574
Psp6I	CCWGG	1 cut(s)	442
PspGI	CCWGG	1 cut(s)	442
PspN4I	GGNNCC	1 cut(s)	162
PstNI	CAGNNNCTG	1 cut(s)	659
PsuI	RGATCY	2 cut(s)	655, 1114
PvuII	CAGCTG	1 cut(s)	1166
RsaI	GTAC	2 cut(s)	208, 1144
RsaNI	GTAC	2 cut(s)	207, 1143
RseI	CAYNNNNRTG	1 cut(s)	83
SacI	GAGCTC	1 cut(s)	574
SapI	GCTCTTC	1 cut(s)	579
SaqAI	TTAA	6 cut(s)	495, 783, 930, 944, 1086, 1119
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	5 cut(s)	655, 760, 972, 1114, 1168
SchI	GAGTC	1 cut(s)	685
ScrFI	CCNGG	2 cut(s)	444, 1025
SduI	GDGCHC	3 cut(s)	346, 574, 967
SexAI	ACCWGGT	1 cut(s)	442
SfaNI	GCATC	2 cut(s)	396, 1149
SfuI	TTCGAA	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	2 cut(s)	618, 1118
SmoI	CTYRAG	2 cut(s)	618, 1118
SphI	GCATGC	1 cut(s)	368
Sse9I	AATT	4 cut(s)	686, 743, 853, 1003
SsiI	CCGC	2 cut(s)	105, 1153
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	2 cut(s)	29, 410
SstI	GAGCTC	1 cut(s)	574
StyD4I	CCNGG	2 cut(s)	442, 1023
TaaI	ACNGT	3 cut(s)	122, 988, 1142
TaiI	ACGT	4 cut(s)	186, 564, 889, 981
TaqI	TCGA	5 cut(s)	36, 72, 448, 747, 975
TaqII	GACCGA	1 cut(s)	912
TasI	AATT	4 cut(s)	686, 743, 853, 1003
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	6 cut(s)	25, 142, 166, 515, 667, 702
Tru1I	TTAA	6 cut(s)	495, 783, 930, 944, 1086, 1119
Tru9I	TTAA	6 cut(s)	495, 783, 930, 944, 1086, 1119
TspDTI	ATGAA	9 cut(s)	33, 101, 528, 537, 699, 847, 926, 1028, 1124
TspGWI	ACGGA	1 cut(s)	226
Vha464I	CTTAAG	1 cut(s)	1118
XapI	RAATTY	1 cut(s)	743
XceI	RCATGY	1 cut(s)	368
XcmI	CCANNNNNNNNNTGG	1 cut(s)	431
XspI	CTAG	2 cut(s)	29, 410
ZraI	GACGTC	1 cut(s)	184
Zsp2I	ATGCAT	1 cut(s)	876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.