Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0000818

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTTGAGCATAGGCTTCAAGAAGAAAATTTACGAAGTCTACAGACATCTACAAGATACCCTACAAGTTTGCTTGATCTCCGCGACGCTCCCTAATGAAATTTTGGAGATGACCAACAAGTTCATGACCGATCCTATAAGGATCCTGGTTAAATGTGACGAGCTGACTTTGGAGGCTGTTATTTTCTGCAACATAAGGCGAAAAGTGGACTGGCTTACTGAAAAGATGCGGACTAGTAACTTTTCTGTGTCTGCAACGCATGGAGACATGCCTCAGAAGGAGCGAGCTGATGCTATTATGAAAGAGTTTCAGAAAGGTCTTTCACGAGTCCTCATCACAACTGATGTTTGGGCTCTGGGCATCGATGTTCAGCAGGTTTCGCTGGTTATCAACTATGATCTTCCAAATAATCGAGAGCTATACATACATAGGATTGGTCGTTCGGGTCGGTTTGGACGAAAGGGTGCGGCAATAAACTTTGTCAAGAAAGATGATATCAGGATCCTAAGAGACATTGAACAGTACACAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

177

Amino Acids

20.57

Weight (kDa)

8.97

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51380 AT1G51380 AT1G51380 AT1G51380 AT3G19760
fragaria_vesca	FvH4_4g36800 FvH4_4g36800 FvH4_4g36800 FvH4_6g49811 FvH4_6g49900
malus_domestica	MD09G1053900.v1.1 MD09G1189300.v1.1 MD09G1268200.v1.1 MD09G1268600.v1.1 MD09G1268800.v1.1 MD13G1006800.v1.1 MD15G1056500.v1.1 MD16G1001000.v1.1
prunus_persica	Prupe.1G346100_v2.0.a1 Prupe.3G165200_v2.0.a1
pyrus_communis	pycom111g04510 pycom16g00440
rosa_chinensis	RchiOBHm_Chr0c44g0503461 RchiOBHm_Chr0c44g0503501 RchiOBHm_Chr0c44g0503531 RchiOBHm_Chr0c44g0503561 RchiOBHm_Chr0c44g0503691 RchiOBHm_Chr0c44g0503701 RchiOBHm_Chr0c44g0503721 RchiOBHm_Chr0c44g0503751 RchiOBHm_Chr2g0169961 RchiOBHm_Chr4g0386061 RchiOBHm_Chr4g0386101 RchiOBHm_Chr4g0386151 RchiOBHm_Chr4g0386181 RchiOBHm_Chr4g0386221 RchiOBHm_Chr4g0386241 RchiOBHm_Chr4g0386301 RchiOBHm_Chr4g0386341 RchiOBHm_Chr4g0386361 RchiOBHm_Chr4g0446531
rosa_laevigata	RLG00000005651 RLG00000010170 RLG00000010175 RLG00000021914
rosa_multiflora	Rmu_sc0005526.1_g000001 Rmu_sc0005795.1_g000003 Rmu_sc0013078.1_g000019 Rmu_sc0022031.1_g000001 Rmu_ssc0000389.1_g000007
rosa_roxburghii	Rroxscaffold_5G00333840 Rroxscaffold_5G00386950
rosa_rugosa	Rorug02G0544700 Rorug02G0545100 Rorug04G0372300
rosa_samantha	Rh2AG617000 Rh2AG617300 Rh2CG597900 Rh2DG639700 Rh2DG640100 Rh2DG640400 Rh4AG010700 Rh4AG433900 Rh4BG007600 Rh4BG443100 Rh4DG441700
rosa_wichuraiana	Rw2G051090 Rw4G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	364
AccI	GTMKAC	1 cut(s)	39
AccII	CGCG	1 cut(s)	83
AciI	CCGC	3 cut(s)	81, 229, 467
AclWI	GGATC	5 cut(s)	125, 136, 149, 496, 509
AcsI	RAATTY	2 cut(s)	27, 99
AfaI	GTAC	1 cut(s)	524
AgsI	TTSAA	2 cut(s)	19, 518
AhlI	ACTAGT	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	144
AloI	GAACNNNNNNTCC	2 cut(s)	424, 456
AluBI	AGCT	3 cut(s)	163, 287, 418
AluI	AGCT	3 cut(s)	163, 287, 418
Alw26I	GTCTC	2 cut(s)	258, 504
AlwI	GGATC	5 cut(s)	125, 136, 149, 496, 509
ApoI	RAATTY	2 cut(s)	27, 99
BamHI	GGATCC	2 cut(s)	141, 501
BanII	GRGCYC	1 cut(s)	355
BarI	GAAGNNNNNNTAC	2 cut(s)	14, 46
BauI	CACGAG	1 cut(s)	324
BciT130I	CCWGG	1 cut(s)	146
BcoDI	GTCTC	2 cut(s)	258, 504
BcuI	ACTAGT	1 cut(s)	233
BfaI	CTAG	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	40
BfuAI	ACCTGC	1 cut(s)	364
BisI	GCNGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	469
Bme1390I	CCNGG	1 cut(s)	146
BmiI	GGNNCC	2 cut(s)	143, 503
BmrFI	CCNGG	1 cut(s)	146
BmsI	GCATC	3 cut(s)	216, 280, 369
Bsa29I	ATCGAT	1 cut(s)	363
Bse1I	ACTGG	1 cut(s)	215
BseBI	CCWGG	1 cut(s)	146
BseCI	ATCGAT	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	287
BseNI	ACTGG	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	83
BshVI	ATCGAT	1 cut(s)	363
BsmAI	GTCTC	2 cut(s)	258, 504
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	5 cut(s)	75, 130, 141, 397, 501
BspACI	CCGC	3 cut(s)	81, 229, 467
BspCNI	CTCAG	1 cut(s)	286
BspDI	ATCGAT	1 cut(s)	363
BspFNI	CGCG	1 cut(s)	83
BspHI	TCATGA	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	143, 503
BspMI	ACCTGC	1 cut(s)	364
BspPI	GGATC	5 cut(s)	125, 136, 149, 496, 509
BsrI	ACTGG	1 cut(s)	215
BssMI	GATC	5 cut(s)	75, 130, 141, 397, 501
BssSI	CACGAG	1 cut(s)	324
Bst2BI	CACGAG	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	1 cut(s)	522
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	2 cut(s)	273, 506
BstFNI	CGCG	1 cut(s)	83
BstKTI	GATC	5 cut(s)	78, 133, 144, 400, 504
BstMAI	GTCTC	2 cut(s)	258, 504
BstMBI	GATC	5 cut(s)	75, 130, 141, 397, 501
BstMWI	GCNNNNNNNGC	1 cut(s)	379
BstNI	CCWGG	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	40
BstUI	CGCG	1 cut(s)	83
BstX2I	RGATCY	2 cut(s)	141, 501
BstYI	RGATCY	2 cut(s)	141, 501
Bsu15I	ATCGAT	1 cut(s)	363
BsuTUI	ATCGAT	1 cut(s)	363
BveI	ACCTGC	1 cut(s)	364
Cac8I	GCNNGC	1 cut(s)	285
CciI	TCATGA	1 cut(s)	123
ClaI	ATCGAT	1 cut(s)	363
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	523
CviAII	CATG	3 cut(s)	124, 260, 268
CviJI	RGCY	7 cut(s)	15, 163, 176, 214, 287, 353, 418
CviKI_1	RGCY	7 cut(s)	15, 163, 176, 214, 287, 353, 418
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	2 cut(s)	273, 506
DpnI	GATC	5 cut(s)	77, 132, 143, 399, 503
DpnII	GATC	5 cut(s)	75, 130, 141, 397, 501
Eco24I	GRGCYC	1 cut(s)	355
Eco32I	GATATC	1 cut(s)	496
EcoRII	CCWGG	1 cut(s)	144
EcoRV	GATATC	1 cut(s)	496
EcoT38I	GRGCYC	1 cut(s)	355
FaeI	CATG	3 cut(s)	127, 263, 271
FatI	CATG	3 cut(s)	123, 259, 267
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	468
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	1 cut(s)	468
HgaI	GACGC	1 cut(s)	94
Hin1II	CATG	3 cut(s)	127, 263, 271
HinfI	GANTC	1 cut(s)	327
Hpy166II	GTNNAC	3 cut(s)	40, 208, 525
Hpy188I	TCNGA	2 cut(s)	276, 312
Hpy188III	TCNNGA	6 cut(s)	19, 124, 324, 413, 484, 499
Hpy8I	GTNNAC	3 cut(s)	40, 208, 525
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	522
HpyCH4V	TGCA	2 cut(s)	189, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	379
HpyF3I	CTNAG	2 cut(s)	273, 506
Hsp92II	CATG	3 cut(s)	127, 263, 271
Kzo9I	GATC	5 cut(s)	75, 130, 141, 397, 501
LmnI	GCTCC	2 cut(s)	93, 280
LpnPI	CCDG	7 cut(s)	131, 158, 196, 341, 359, 368, 484
LweI	GCATC	3 cut(s)	216, 280, 369
MaeI	CTAG	1 cut(s)	234
MaeIII	GTNAC	2 cut(s)	155, 236
MalI	GATC	5 cut(s)	77, 132, 143, 399, 503
MboI	GATC	5 cut(s)	75, 130, 141, 397, 501
MboII	GAAGA	2 cut(s)	34, 392
MflI	RGATCY	2 cut(s)	141, 501
MhlI	GDGCHC	1 cut(s)	355
MluCI	AATT	2 cut(s)	27, 99
MlyI	GAGTC	1 cut(s)	336
MnlI	CCTC	3 cut(s)	166, 282, 341
MseI	TTAA	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	1 cut(s)	379
NdeII	GATC	5 cut(s)	75, 130, 141, 397, 501
NlaIII	CATG	3 cut(s)	127, 263, 271
NlaIV	GGNNCC	2 cut(s)	143, 503
NmuCI	GTSAC	1 cut(s)	155
NspI	RCATGY	1 cut(s)	271
PagI	TCATGA	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	454
PkrI	GCNGC	1 cut(s)	469
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	143, 503
PsuI	RGATCY	2 cut(s)	141, 501
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	5 cut(s)	75, 130, 141, 397, 501
SchI	GAGTC	1 cut(s)	336
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	355
SetI	ASST	5 cut(s)	165, 289, 319, 378, 420
SfaNI	GCATC	3 cut(s)	216, 280, 369
SfcI	CTRYAG	1 cut(s)	40
SpeI	ACTAGT	1 cut(s)	233
Sse9I	AATT	2 cut(s)	27, 99
SsiI	CCGC	3 cut(s)	81, 229, 467
SspMI	CTAG	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	522
TaqI	TCGA	2 cut(s)	363, 412
TaqII	GACCGA	1 cut(s)	143
TasI	AATT	2 cut(s)	27, 99
TatI	WGTACW	1 cut(s)	522
TauI	GCSGC	1 cut(s)	470
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	3 cut(s)	111, 112, 314
XapI	RAATTY	2 cut(s)	27, 99
XceI	RCATGY	1 cut(s)	271
XmiI	GTMKAC	1 cut(s)	39
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.