Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000818

Physical Location & Seq

Genomic Coordinates Forward (+)

34256950 .. 34257951

Gene Structure 1002 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1268200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTTAAGCAGATCATTCAAGGATCAGATTTACAATGTCTATAGATATCTTCCACCTGAACTACAAGTCTGCTTAATTTCCGCTACGCTTCCTCATGAAATCCTGGAGATGACGAGCAAGTTTATGACGGACCCTGTAAGGATCCTTGTCAAGCGTGATGAGTTGACTTTGGAGGGAATCAAGCAATTTTTCGTTTCGGTTGAAAGAGAAGAATGGAAATTTGATACGCTGTGCGATCTCTATGACACTCTTACAATTACACAAGCTGTTATTTTCTGCAACACAAAGCGAAAGGTGGATTGGCTGACAGAAAAGATGCGGAGTAATAACTTTACTGTATCTTCCATGCATGCAGACATGCCTCAAAAGGAAAGAGATGTCATTACCCAAGAGTTTCGTGCAGGAAATACTCGTGTCCTGATCACCACTGATGTTTGGGCTCGGGGCCTCGATGTTCAGCAGGTTTCCTTGGTTATCAACTATGATCTTCCAAACAATCGAGAGTTATACATTCATCGGATTGGTCGTTCTGGTCGTTTTGGGCGCAAGGGTGTGGCCATAAACTTTGTCAGAACCAATGATATCAAGATCTTAAGAGACATCGAGCAGTACTACAGTACCCAGATTGACGAAATGCCGATGAACGTTGGTGATTTGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

221

Amino Acids

25.85

Weight (kDa)

6.33

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	72 - 181	2.6e-34	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51380 AT1G51380 AT1G51380 AT1G51380 AT3G19760
fragaria_vesca	FvH4_4g36800 FvH4_4g36800 FvH4_4g36800 FvH4_6g49811 FvH4_6g49900
malus_domestica	MD09G1053900.v1.1 MD09G1189300.v1.1 MD09G1268200.v1.1 MD09G1268600.v1.1 MD09G1268800.v1.1 MD13G1006800.v1.1 MD15G1056500.v1.1 MD16G1001000.v1.1
prunus_persica	Prupe.1G346100_v2.0.a1 Prupe.3G165200_v2.0.a1
pyrus_communis	pycom111g04510 pycom16g00440
rosa_chinensis	RchiOBHm_Chr0c44g0503461 RchiOBHm_Chr0c44g0503501 RchiOBHm_Chr0c44g0503531 RchiOBHm_Chr0c44g0503561 RchiOBHm_Chr0c44g0503691 RchiOBHm_Chr0c44g0503701 RchiOBHm_Chr0c44g0503721 RchiOBHm_Chr0c44g0503751 RchiOBHm_Chr2g0169961 RchiOBHm_Chr4g0386061 RchiOBHm_Chr4g0386101 RchiOBHm_Chr4g0386151 RchiOBHm_Chr4g0386181 RchiOBHm_Chr4g0386221 RchiOBHm_Chr4g0386241 RchiOBHm_Chr4g0386301 RchiOBHm_Chr4g0386341 RchiOBHm_Chr4g0386361 RchiOBHm_Chr4g0446531
rosa_laevigata	RLG00000005651 RLG00000010170 RLG00000010175 RLG00000021914
rosa_multiflora	Rmu_sc0005526.1_g000001 Rmu_sc0005795.1_g000003 Rmu_sc0013078.1_g000019 Rmu_sc0022031.1_g000001 Rmu_ssc0000389.1_g000007
rosa_roxburghii	Rroxscaffold_5G00333840 Rroxscaffold_5G00386950
rosa_rugosa	Rorug02G0544700 Rorug02G0545100 Rorug04G0372300
rosa_samantha	Rh2AG617000 Rh2AG617300 Rh2CG597900 Rh2DG639700 Rh2DG640100 Rh2DG640400 Rh4AG010700 Rh4AG433900 Rh4BG007600 Rh4BG443100 Rh4DG441700
rosa_wichuraiana	Rw2G051090 Rw4G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	451
AciI	CCGC	2 cut(s)	81, 319
AclI	AACGTT	1 cut(s)	645
AclWI	GGATC	3 cut(s)	30, 136, 149
AcoI	YGGCCR	1 cut(s)	555
AcsI	RAATTY	1 cut(s)	218
AfaI	GTAC	2 cut(s)	611, 619
AflII	CTTAAG	1 cut(s)	592
AgsI	TTSAA	2 cut(s)	19, 203
AjnI	CCWGG	1 cut(s)	102
AjuI	GAANNNNNNNTTGG	2 cut(s)	283, 315
AloI	GAACNNNNNNTCC	2 cut(s)	511, 543
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
Alw26I	GTCTC	1 cut(s)	591
AlwI	GGATC	3 cut(s)	30, 136, 149
Ama87I	CYCGRG	1 cut(s)	441
AoxI	GGCC	2 cut(s)	445, 555
ApoI	RAATTY	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	546
AspS9I	GGNCC	2 cut(s)	130, 445
AsuHPI	GGTGA	2 cut(s)	415, 662
AvaI	CYCGRG	1 cut(s)	441
AvaII	GGWCC	1 cut(s)	130
BaeI	ACNNNNGTAYC	2 cut(s)	601, 634
BalI	TGGCCA	1 cut(s)	557
BamHI	GGATCC	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	442
BauI	CACGAG	1 cut(s)	411
BciT130I	CCWGG	1 cut(s)	104
BclI	TGATCA	1 cut(s)	420
BcoDI	GTCTC	1 cut(s)	591
BfmI	CTRYAG	2 cut(s)	40, 613
BfrI	CTTAAG	1 cut(s)	592
BfuAI	ACCTGC	1 cut(s)	451
BglII	AGATCT	1 cut(s)	588
BmcAI	AGTACT	1 cut(s)	611
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	130
BmeT110I	CYCGRG	1 cut(s)	441
BmgT120I	GGNCC	2 cut(s)	130, 445
BmiI	GGNNCC	3 cut(s)	132, 143, 446
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	468
BsgI	GTGCAG	1 cut(s)	420
BshFI	GGCC	2 cut(s)	447, 557
BsiHKCI	CYCGRG	1 cut(s)	441
BsmAI	GTCTC	1 cut(s)	591
BsnI	GGCC	2 cut(s)	447, 557
BsoBI	CYCGRG	1 cut(s)	441
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp143I	GATC	7 cut(s)	11, 22, 141, 235, 420, 484, 588
BspACI	CCGC	2 cut(s)	81, 319
BspANI	GGCC	2 cut(s)	447, 557
BspHI	TCATGA	1 cut(s)	94
BspLI	GGNNCC	3 cut(s)	132, 143, 446
BspMI	ACCTGC	1 cut(s)	451
BspPI	GGATC	3 cut(s)	30, 136, 149
BspTI	CTTAAG	1 cut(s)	592
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	7 cut(s)	11, 22, 141, 235, 420, 484, 588
BssSI	CACGAG	1 cut(s)	411
BssT1I	CCWWGG	1 cut(s)	468
Bst2BI	CACGAG	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	337, 617
BstAFI	CTTAAG	1 cut(s)	592
BstC8I	GCNNGC	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	546
BstKTI	GATC	7 cut(s)	14, 25, 144, 238, 423, 487, 591
BstMAI	GTCTC	1 cut(s)	591
BstMBI	GATC	7 cut(s)	11, 22, 141, 235, 420, 484, 588
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	2 cut(s)	353, 361
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	2 cut(s)	40, 613
BstX2I	RGATCY	2 cut(s)	141, 588
BstYI	RGATCY	2 cut(s)	141, 588
BsuRI	GGCC	2 cut(s)	447, 557
BtsIMutI	CAGTG	1 cut(s)	426
BveI	ACCTGC	1 cut(s)	451
Cac8I	GCNNGC	1 cut(s)	351
CciI	TCATGA	1 cut(s)	94
CfoI	GCGC	1 cut(s)	546
Cfr13I	GGNCC	2 cut(s)	130, 445
Csp6I	GTAC	2 cut(s)	610, 618
CviAII	CATG	4 cut(s)	95, 346, 350, 358
CviJI	RGCY	5 cut(s)	266, 304, 440, 447, 557
CviKI_1	RGCY	5 cut(s)	266, 304, 440, 447, 557
CviQI	GTAC	2 cut(s)	610, 618
DpnI	GATC	7 cut(s)	13, 24, 143, 237, 422, 486, 590
DpnII	GATC	7 cut(s)	11, 22, 141, 235, 420, 484, 588
EaeI	YGGCCR	1 cut(s)	555
Eco130I	CCWWGG	1 cut(s)	468
Eco24I	GRGCYC	1 cut(s)	442
Eco32I	GATATC	2 cut(s)	47, 583
Eco47I	GGWCC	1 cut(s)	130
Eco88I	CYCGRG	1 cut(s)	441
EcoO109I	RGGNCCY	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	102
EcoRV	GATATC	2 cut(s)	47, 583
EcoT14I	CCWWGG	1 cut(s)	468
EcoT22I	ATGCAT	1 cut(s)	351
EcoT38I	GRGCYC	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	4 cut(s)	98, 349, 353, 361
FatI	CATG	4 cut(s)	94, 345, 349, 357
FbaI	TGATCA	1 cut(s)	420
FriOI	GRGCYC	1 cut(s)	442
GlaI	GCGC	1 cut(s)	545
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	2 cut(s)	447, 557
HhaI	GCGC	1 cut(s)	546
Hin1II	CATG	4 cut(s)	98, 349, 353, 361
Hin6I	GCGC	1 cut(s)	544
HinP1I	GCGC	1 cut(s)	544
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HinfI	GANTC	1 cut(s)	177
HphI	GGTGA	2 cut(s)	415, 662
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	3 cut(s)	27, 519, 572
Hpy188III	TCNNGA	4 cut(s)	95, 418, 500, 586
Hpy8I	GTNNAC	1 cut(s)	165
HpyCH4III	ACNGT	2 cut(s)	337, 617
HpyCH4IV	ACGT	1 cut(s)	645
HpyCH4V	TGCA	4 cut(s)	279, 349, 353, 401
HpySE526I	ACGT	1 cut(s)	645
Hsp92II	CATG	4 cut(s)	98, 349, 353, 361
HspAI	GCGC	1 cut(s)	544
Ksp22I	TGATCA	1 cut(s)	420
Kzo9I	GATC	7 cut(s)	11, 22, 141, 235, 420, 484, 588
LpnPI	CCDG	9 cut(s)	69, 89, 116, 147, 387, 431, 446, 516, 635
LweI	GCATC	1 cut(s)	306
MaeII	ACGT	1 cut(s)	645
MalI	GATC	7 cut(s)	13, 24, 143, 237, 422, 486, 590
MboI	GATC	7 cut(s)	11, 22, 141, 235, 420, 484, 588
MboII	GAAGA	4 cut(s)	41, 221, 333, 479
MflI	RGATCY	2 cut(s)	141, 588
MhlI	GDGCHC	1 cut(s)	442
MlsI	TGGCCA	1 cut(s)	557
MluCI	AATT	4 cut(s)	75, 185, 218, 255
MluNI	TGGCCA	1 cut(s)	557
MnlI	CCTC	4 cut(s)	102, 166, 372, 458
Mox20I	TGGCCA	1 cut(s)	557
Mph1103I	ATGCAT	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	557
MseI	TTAA	3 cut(s)	5, 74, 593
Msp20I	TGGCCA	1 cut(s)	557
MspCI	CTTAAG	1 cut(s)	592
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
NdeII	GATC	7 cut(s)	11, 22, 141, 235, 420, 484, 588
NlaIII	CATG	4 cut(s)	98, 349, 353, 361
NlaIV	GGNNCC	3 cut(s)	132, 143, 446
NsiI	ATGCAT	1 cut(s)	351
NspI	RCATGY	2 cut(s)	353, 361
PaeI	GCATGC	1 cut(s)	353
PagI	TCATGA	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	2 cut(s)	523, 532
PfeI	GAWTC	1 cut(s)	177
PfoI	TCCNGGA	1 cut(s)	102
Psp1406I	AACGTT	1 cut(s)	645
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	3 cut(s)	132, 143, 446
PspPI	GGNCC	2 cut(s)	130, 445
PsuI	RGATCY	2 cut(s)	141, 588
RsaI	GTAC	2 cut(s)	611, 619
RsaNI	GTAC	2 cut(s)	610, 618
SaqAI	TTAA	3 cut(s)	5, 74, 593
Sau3AI	GATC	7 cut(s)	11, 22, 141, 235, 420, 484, 588
Sau96I	GGNCC	2 cut(s)	130, 445
ScaI	AGTACT	1 cut(s)	611
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	442
SetI	ASST	5 cut(s)	58, 268, 297, 465, 648
SfaNI	GCATC	1 cut(s)	306
SfcI	CTRYAG	2 cut(s)	40, 613
SinI	GGWCC	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	592
SmoI	CTYRAG	1 cut(s)	592
SphI	GCATGC	1 cut(s)	353
Sse9I	AATT	4 cut(s)	75, 185, 218, 255
SsiI	CCGC	2 cut(s)	81, 319
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	2 cut(s)	337, 617
TaiI	ACGT	1 cut(s)	648
TaqI	TCGA	3 cut(s)	450, 499, 603
TasI	AATT	4 cut(s)	75, 185, 218, 255
TatI	WGTACW	1 cut(s)	609
TfiI	GAWTC	1 cut(s)	177
Tru1I	TTAA	3 cut(s)	5, 74, 593
Tru9I	TTAA	3 cut(s)	5, 74, 593
TscAI	CASTG	1 cut(s)	433
TspDTI	ATGAA	3 cut(s)	111, 503, 656
TspGWI	ACGGA	1 cut(s)	143
TspRI	CASTG	1 cut(s)	433
Vha464I	CTTAAG	1 cut(s)	592
VpaK11BI	GGWCC	1 cut(s)	130
XapI	RAATTY	1 cut(s)	218
XceI	RCATGY	2 cut(s)	353, 361
ZrmI	AGTACT	1 cut(s)	611
Zsp2I	ATGCAT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.