MD09G1268800.v1.1

Eukaryotic initiation factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
34319880 .. 34320565
686 bp
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UTR
Exon/CDS
Intron
MD09G1268800.v1.1.491

Sequence Viewer

Length: 276 bp
ATGAGGAGTAATAACTTTACTGTATCTTCCATGCATGGAGAGATGCCTCAAAAGGAAAAGATGCCATTACCCAAGATTTCCTTGGTTATCAACTATGATCTTCCAAACAATCGAGAGCTATACATTCATTGGATCGGTCGTTCTGGTCATTTTAAGTGCAAGAGTGTAGCGATAAACTTTGTCAAAAGCGATGATATCAAGATCTTAAGAGACATTGAACAATACTATAGTACCCAGATTGACGAAATGTTGATGAACGTTGCTGATTTGATTTGA

Protein Analysis

92

Amino Acids

10.66

Weight (kDa)

6.82

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 258
AclWI GGATC 1 cut(s) 140
AfaI GTAC 1 cut(s) 232
AflII CTTAAG 1 cut(s) 205
AgsI TTSAA 1 cut(s) 218
AloI GAACNNNNNNTCC 2 cut(s) 124, 156
AluBI AGCT 1 cut(s) 118
AluI AGCT 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 204
AlwI GGATC 1 cut(s) 140
BaeI ACNNNNGTAYC 2 cut(s) 214, 247
BcoDI GTCTC 1 cut(s) 204
BfmI CTRYAG 1 cut(s) 226
BfrI CTTAAG 1 cut(s) 205
BglII AGATCT 1 cut(s) 201
BmsI GCATC 2 cut(s) 33, 51
BsaJI CCNNGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 81
BseRI GAGGAG 1 cut(s) 19
Bsh1285I CGRYCG 1 cut(s) 139
BsiEI CGRYCG 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 204
Bsp143I GATC 3 cut(s) 97, 132, 201
BspPI GGATC 1 cut(s) 140
BspTI CTTAAG 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 3 cut(s) 97, 132, 201
BssT1I CCWWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 22
BstAFI CTTAAG 1 cut(s) 205
BstKTI GATC 3 cut(s) 100, 135, 204
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 3 cut(s) 97, 132, 201
BstMCI CGRYCG 1 cut(s) 139
BstSFI CTRYAG 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 201
BstYI RGATCY 1 cut(s) 201
BtgZI GCGATG 1 cut(s) 204
Csp6I GTAC 1 cut(s) 231
CviAII CATG 2 cut(s) 31, 35
CviJI RGCY 1 cut(s) 118
CviKI_1 RGCY 1 cut(s) 118
CviQI GTAC 1 cut(s) 231
DpnI GATC 3 cut(s) 99, 134, 203
DpnII GATC 3 cut(s) 97, 132, 201
Eco130I CCWWGG 1 cut(s) 81
Eco32I GATATC 1 cut(s) 196
EcoRV GATATC 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 81
EcoT22I ATGCAT 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 2 cut(s) 34, 38
FaiI YATR 5 cut(s) 32, 36, 96, 121, 228
FalI AAGNNNNNCTT 2 cut(s) 65, 97
FatI CATG 2 cut(s) 30, 34
Hin1II CATG 2 cut(s) 34, 38
Hpy188III TCNNGA 2 cut(s) 113, 199
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 2 cut(s) 34, 159
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 2 cut(s) 34, 38
Kzo9I GATC 3 cut(s) 97, 132, 201
LpnPI CCDG 2 cut(s) 129, 248
LweI GCATC 2 cut(s) 33, 51
MaeII ACGT 1 cut(s) 258
MalI GATC 3 cut(s) 99, 134, 203
MboI GATC 3 cut(s) 97, 132, 201
MboII GAAGA 2 cut(s) 18, 92
MflI RGATCY 1 cut(s) 201
MnlI CCTC 1 cut(s) 57
Mph1103I ATGCAT 1 cut(s) 36
MseI TTAA 2 cut(s) 153, 206
MspCI CTTAAG 1 cut(s) 205
NdeII GATC 3 cut(s) 97, 132, 201
NlaIII CATG 2 cut(s) 34, 38
NsiI ATGCAT 1 cut(s) 36
Psp1406I AACGTT 1 cut(s) 258
PsuI RGATCY 1 cut(s) 201
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
SaqAI TTAA 2 cut(s) 153, 206
Sau3AI GATC 3 cut(s) 97, 132, 201
SetI ASST 2 cut(s) 120, 261
SfaNI GCATC 2 cut(s) 33, 51
SfcI CTRYAG 1 cut(s) 226
SgeI CNNG 9 cut(s) 43, 47, 85, 94, 125, 156, 172, 211, 247
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 1 cut(s) 261
TaqI TCGA 1 cut(s) 112
TaqII GACCGA 1 cut(s) 125
Tru1I TTAA 2 cut(s) 153, 206
Tru9I TTAA 2 cut(s) 153, 206
TspDTI ATGAA 2 cut(s) 116, 269
Vha464I CTTAAG 1 cut(s) 205
XcmI CCANNNNNNNNNTGG 1 cut(s) 79
Zsp2I ATGCAT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.