Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000818

Physical Location & Seq

Genomic Coordinates Forward (+)

1847464 .. 1849987

Gene Structure 2524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35972

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGACCCGACCAGTTCAGGGCGGCGGCAAGGTGCTGAAGGAGAAGCTGGAGTTTGTGCCGTCAGATGATATAAAGCCGATCATGAGCTTCGATCAGATGAACCTCAAGGACGAGCTCCTCCGAGGCATCTACAACCAAGGTTTCAAATTTCGGTTTCGGTTTCGATTTCGGTACTTCAAATTTAAGGAAATTTCAGAGAAAGTTTCGATTTCGGTGGAAATTTCGCCCTCCGCCATCCAGCAAAGGGCCATCAGACCCATAATCGAGGGCCGCGACGTCATAGCTCAGGCTCAATCTAGCATTGGAAAGACCTCCATGATTGCCCTAGCTTCTTGCCAAACCGTCGACACCTCCTCCAGAGAGGTTCAGGTGTTGATATTGTCTCCAACGAGAGAATTGGCGGCACAGACAGAGAAAGTGATACTGGCAATGGGAAACTACATGAGTATTCAAGCGCATTCCTGCATTGGAGACAAAAGCGTGGGTGAGGATATCAGAAAGCTAGAAAACAGAGTTCAGGTGGTGTCTGGAACTCCCGGTAGAGTCCATGACATGATTCAGAGGGGAAGTCTACGCACTCGACACATCAAACTACTAATTCTTGATGAATCTGATGAGATGTTGAGCAGAGGCTTCAAGAAGAAAATTTACGAAGTCTACAGACATCTACAAGATACCCTACAAGTTTGCTTGATCTCCGCGACGCTCCCTAATGAAATTTTGGAGATGACCAACAAGTTCATGACCGATCCTATAAGGATCCTGGTTAAACGTGACGAGCTGACTTTGGAGCAATTTTTCGTTACAATTGAAAAAGAAGATTGGAAGTTTGATACTCTTTGCGATCTCTATGATACCCTTACGATCACACAAGCTGTTATTTTCTGCAACACAAGGCGAAAAGTGGACTGGCTTACTGAAAAGATGCGGACTAGTAACTTTTCTGTGTCTGCAATGCATGGAGACATGTCTCAGAAGGAGCGAAATGATGCTATTATGAAAGAGTTTCAGAAAGGTCTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

341

Amino Acids

39.24

Weight (kDa)

8.95

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	78 - 240	8.2e-42	DEAD/DEAH box helicase
Helicase_C	PF00271	276 - 339	1.2e-09	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51380 AT1G51380 AT1G51380 AT1G51380 AT3G19760
fragaria_vesca	FvH4_4g36800 FvH4_4g36800 FvH4_4g36800 FvH4_6g49811 FvH4_6g49900
malus_domestica	MD09G1053900.v1.1 MD09G1189300.v1.1 MD09G1268200.v1.1 MD09G1268600.v1.1 MD09G1268800.v1.1 MD13G1006800.v1.1 MD15G1056500.v1.1 MD16G1001000.v1.1
prunus_persica	Prupe.1G346100_v2.0.a1 Prupe.3G165200_v2.0.a1
pyrus_communis	pycom111g04510 pycom16g00440
rosa_chinensis	RchiOBHm_Chr0c44g0503461 RchiOBHm_Chr0c44g0503501 RchiOBHm_Chr0c44g0503531 RchiOBHm_Chr0c44g0503561 RchiOBHm_Chr0c44g0503691 RchiOBHm_Chr0c44g0503701 RchiOBHm_Chr0c44g0503721 RchiOBHm_Chr0c44g0503751 RchiOBHm_Chr2g0169961 RchiOBHm_Chr4g0386061 RchiOBHm_Chr4g0386101 RchiOBHm_Chr4g0386151 RchiOBHm_Chr4g0386181 RchiOBHm_Chr4g0386221 RchiOBHm_Chr4g0386241 RchiOBHm_Chr4g0386301 RchiOBHm_Chr4g0386341 RchiOBHm_Chr4g0386361 RchiOBHm_Chr4g0446531
rosa_laevigata	RLG00000005651 RLG00000010170 RLG00000010175 RLG00000021914
rosa_multiflora	Rmu_sc0005526.1_g000001 Rmu_sc0005795.1_g000003 Rmu_sc0013078.1_g000019 Rmu_sc0022031.1_g000001 Rmu_ssc0000389.1_g000007
rosa_roxburghii	Rroxscaffold_5G00333840 Rroxscaffold_5G00386950
rosa_rugosa	Rorug02G0544700 Rorug02G0545100 Rorug04G0372300
rosa_samantha	Rh2AG617000 Rh2AG617300 Rh2CG597900 Rh2DG639700 Rh2DG640100 Rh2DG640400 Rh4AG010700 Rh4AG433900 Rh4BG007600 Rh4BG443100 Rh4DG441700
rosa_wichuraiana	Rw2G051090 Rw4G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
AccI	GTMKAC	3 cut(s)	345, 571, 657
AccII	CGCG	2 cut(s)	273, 701
AciI	CCGC	7 cut(s)	21, 24, 231, 271, 401, 699, 928
AclWI	GGATC	3 cut(s)	743, 754, 767
AcsI	RAATTY	6 cut(s)	146, 179, 189, 219, 645, 717
AcuI	CTGAAG	1 cut(s)	56
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	2 cut(s)	17, 244
AflIII	ACRYGT	1 cut(s)	966
AgsI	TTSAA	5 cut(s)	145, 178, 452, 637, 812
AhlI	ACTAGT	1 cut(s)	932
AjnI	CCWGG	1 cut(s)	762
AluBI	AGCT	8 cut(s)	46, 87, 115, 284, 329, 502, 781, 875
AluI	AGCT	8 cut(s)	46, 87, 115, 284, 329, 502, 781, 875
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	4 cut(s)	387, 465, 957, 975
AlwI	GGATC	3 cut(s)	743, 754, 767
AoxI	GGCC	2 cut(s)	246, 268
ApoI	RAATTY	6 cut(s)	146, 179, 189, 219, 645, 717
AspLEI	GCGC	1 cut(s)	457
AspS9I	GGNCC	2 cut(s)	246, 268
AsuC2I	CCSGG	1 cut(s)	537
AsuHPI	GGTGA	1 cut(s)	497
BamHI	GGATCC	1 cut(s)	759
BanII	GRGCYC	1 cut(s)	117
BarI	GAAGNNNNNNTAC	2 cut(s)	632, 664
Bbv12I	GWGCWC	1 cut(s)	117
BccI	CCATC	2 cut(s)	242, 257
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	764
BcnI	CCSGG	1 cut(s)	537
BcoDI	GTCTC	4 cut(s)	387, 465, 957, 975
BcuI	ACTAGT	1 cut(s)	932
BfaI	CTAG	4 cut(s)	297, 326, 503, 933
BfmI	CTRYAG	1 cut(s)	658
BisI	GCNGC	4 cut(s)	22, 25, 271, 402
BlsI	GCNGC	4 cut(s)	23, 26, 272, 403
Bme1390I	CCNGG	2 cut(s)	537, 764
BmgT120I	GGNCC	2 cut(s)	246, 268
BmiI	GGNNCC	1 cut(s)	761
BmrFI	CCNGG	2 cut(s)	537, 764
BmsI	GCATC	3 cut(s)	135, 915, 979
BpmI	CTGGAG	2 cut(s)	68, 340
Bpu10I	CCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	537
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	121, 136
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 244
Bse1I	ACTGG	3 cut(s)	11, 429, 914
Bse3DI	GCAATG	2 cut(s)	435, 960
BseBI	CCWGG	1 cut(s)	764
BseDI	CCNNGG	2 cut(s)	121, 136
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	2 cut(s)	17, 244
BseMI	GCAATG	2 cut(s)	435, 960
BseMII	CTCAG	2 cut(s)	299, 986
BseNI	ACTGG	3 cut(s)	11, 429, 914
BseRI	GAGGAG	2 cut(s)	107, 343
Bsh1236I	CGCG	2 cut(s)	273, 701
BshFI	GGCC	2 cut(s)	248, 270
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	537
BslI	CCNNNNNNNGG	2 cut(s)	17, 244
BsmAI	GTCTC	4 cut(s)	387, 465, 957, 975
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	2 cut(s)	248, 270
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	7 cut(s)	78, 91, 693, 748, 759, 844, 864
BspACI	CCGC	7 cut(s)	21, 24, 231, 271, 401, 699, 928
BspANI	GGCC	2 cut(s)	248, 270
BspCNI	CTCAG	2 cut(s)	298, 985
BspFNI	CGCG	2 cut(s)	273, 701
BspHI	TCATGA	3 cut(s)	81, 741, 1022
BspLI	GGNNCC	1 cut(s)	761
BspPI	GGATC	3 cut(s)	743, 754, 767
BsrDI	GCAATG	2 cut(s)	435, 960
BsrI	ACTGG	3 cut(s)	11, 429, 914
BssECI	CCNNGG	2 cut(s)	121, 136
BssMI	GATC	7 cut(s)	78, 91, 693, 748, 759, 844, 864
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	764
Bst4CI	ACNGT	1 cut(s)	343
BstACI	GRCGYC	1 cut(s)	276
BstDEI	CTNAG	2 cut(s)	285, 972
BstF5I	GGATG	1 cut(s)	234
BstFNI	CGCG	2 cut(s)	273, 701
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	7 cut(s)	81, 94, 696, 751, 762, 847, 867
BstMAI	GTCTC	4 cut(s)	387, 465, 957, 975
BstMBI	GATC	7 cut(s)	78, 91, 693, 748, 759, 844, 864
BstNI	CCWGG	1 cut(s)	764
BstNSI	RCATGY	1 cut(s)	970
BstSCI	CCNGG	2 cut(s)	535, 762
BstSFI	CTRYAG	1 cut(s)	658
BstUI	CGCG	2 cut(s)	273, 701
BstX2I	RGATCY	1 cut(s)	759
BstYI	RGATCY	1 cut(s)	759
BsuRI	GGCC	2 cut(s)	248, 270
BtsCI	GGATG	1 cut(s)	234
CciI	TCATGA	3 cut(s)	81, 741, 1022
CfoI	GCGC	1 cut(s)	457
Cfr13I	GGNCC	2 cut(s)	246, 268
CseI	GACGC	1 cut(s)	712
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	9 cut(s)	82, 316, 442, 548, 553, 742, 959, 967, 1023
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	2 cut(s)	285, 972
DpnI	GATC	7 cut(s)	80, 93, 695, 750, 761, 846, 866
DpnII	GATC	7 cut(s)	78, 91, 693, 748, 759, 844, 864
EciI	GGCGGA	1 cut(s)	220
Ecl136II	GAGCTC	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	117
Eco32I	GATATC	1 cut(s)	493
Eco53kI	GAGCTC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	762
EcoRV	GATATC	1 cut(s)	493
EcoT14I	CCWWGG	1 cut(s)	136
EcoT22I	ATGCAT	1 cut(s)	960
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	9 cut(s)	85, 319, 445, 551, 556, 745, 962, 970, 1026
FatI	CATG	9 cut(s)	81, 315, 441, 547, 552, 741, 958, 966, 1022
FblI	GTMKAC	3 cut(s)	345, 571, 657
Fnu4HI	GCNGC	4 cut(s)	22, 25, 271, 402
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	4 cut(s)	22, 25, 271, 402
FspBI	CTAG	4 cut(s)	297, 326, 503, 933
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	4 cut(s)	22, 25, 271, 402
GsuI	CTGGAG	2 cut(s)	68, 340
HaeIII	GGCC	2 cut(s)	248, 270
HapII	CCGG	1 cut(s)	537
HgaI	GACGC	1 cut(s)	712
HhaI	GCGC	1 cut(s)	457
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	9 cut(s)	85, 319, 445, 551, 556, 745, 962, 970, 1026
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	3 cut(s)	543, 556, 608
HpaII	CCGG	1 cut(s)	537
HphI	GGTGA	1 cut(s)	497
Hpy166II	GTNNAC	4 cut(s)	346, 572, 658, 907
Hpy188III	TCNNGA	7 cut(s)	82, 357, 528, 602, 637, 742, 1023
Hpy8I	GTNNAC	4 cut(s)	346, 572, 658, 907
Hpy99I	CGWCG	3 cut(s)	278, 347, 706
HpyAV	CCTTC	2 cut(s)	31, 970
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4IV	ACGT	2 cut(s)	276, 772
HpyCH4V	TGCA	4 cut(s)	465, 888, 953, 958
HpyF3I	CTNAG	2 cut(s)	285, 972
HpySE526I	ACGT	2 cut(s)	276, 772
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	9 cut(s)	85, 319, 445, 551, 556, 745, 962, 970, 1026
HspAI	GCGC	1 cut(s)	455
Kzo9I	GATC	7 cut(s)	78, 91, 693, 748, 759, 844, 864
LmnI	GCTCC	4 cut(s)	120, 711, 790, 979
LweI	GCATC	3 cut(s)	135, 915, 979
MaeI	CTAG	4 cut(s)	297, 326, 503, 933
MaeII	ACGT	2 cut(s)	276, 772
MaeIII	GTNAC	3 cut(s)	773, 802, 935
MalI	GATC	7 cut(s)	80, 93, 695, 750, 761, 846, 866
MboI	GATC	7 cut(s)	78, 91, 693, 748, 759, 844, 864
MboII	GAAGA	2 cut(s)	652, 830
MfeI	CAATTG	1 cut(s)	807
MflI	RGATCY	1 cut(s)	759
MhlI	GDGCHC	1 cut(s)	117
MlyI	GAGTC	1 cut(s)	552
MmeI	TCCRAC	1 cut(s)	410
Mph1103I	ATGCAT	1 cut(s)	960
MseI	TTAA	2 cut(s)	183, 768
MspI	CCGG	1 cut(s)	537
MspR9I	CCNGG	2 cut(s)	537, 764
MunI	CAATTG	1 cut(s)	807
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	1 cut(s)	764
MvnI	CGCG	2 cut(s)	273, 701
NciI	CCSGG	1 cut(s)	537
NdeII	GATC	7 cut(s)	78, 91, 693, 748, 759, 844, 864
NlaIII	CATG	9 cut(s)	85, 319, 445, 551, 556, 745, 962, 970, 1026
NlaIV	GGNNCC	1 cut(s)	761
NmuCI	GTSAC	1 cut(s)	773
NsiI	ATGCAT	1 cut(s)	960
NspI	RCATGY	1 cut(s)	970
PagI	TCATGA	3 cut(s)	81, 741, 1022
PciI	ACATGT	1 cut(s)	966
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PctI	GAATGC	1 cut(s)	457
PfeI	GAWTC	2 cut(s)	556, 608
PkrI	GCNGC	4 cut(s)	23, 26, 272, 403
PleI	GAGTC	1 cut(s)	551
PpsI	GAGTC	1 cut(s)	551
PscI	ACATGT	1 cut(s)	966
Psp124BI	GAGCTC	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	762
PspGI	CCWGG	1 cut(s)	762
PspN4I	GGNNCC	1 cut(s)	761
PspPI	GGNCC	2 cut(s)	246, 268
PsuI	RGATCY	1 cut(s)	759
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SacI	GAGCTC	1 cut(s)	117
SalI	GTCGAC	1 cut(s)	344
SaqAI	TTAA	2 cut(s)	183, 768
SatI	GCNGC	4 cut(s)	22, 25, 271, 402
Sau3AI	GATC	7 cut(s)	78, 91, 693, 748, 759, 844, 864
Sau96I	GGNCC	2 cut(s)	246, 268
SchI	GAGTC	1 cut(s)	552
ScrFI	CCNGG	2 cut(s)	537, 764
SduI	GDGCHC	1 cut(s)	117
SfaNI	GCATC	3 cut(s)	135, 915, 979
SfcI	CTRYAG	1 cut(s)	658
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SpeI	ACTAGT	1 cut(s)	932
SsiI	CCGC	7 cut(s)	21, 24, 231, 271, 401, 699, 928
SspMI	CTAG	4 cut(s)	297, 326, 503, 933
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	535, 762
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	1 cut(s)	343
TaiI	ACGT	2 cut(s)	279, 775
TaqI	TCGA	6 cut(s)	90, 163, 206, 264, 345, 580
TaqII	GACCGA	1 cut(s)	761
TauI	GCSGC	4 cut(s)	24, 27, 273, 404
TfiI	GAWTC	2 cut(s)	556, 608
Tru1I	TTAA	2 cut(s)	183, 768
Tru9I	TTAA	2 cut(s)	183, 768
TseFI	GTSAC	1 cut(s)	773
Tsp45I	GTSAC	1 cut(s)	773
TspDTI	ATGAA	6 cut(s)	113, 621, 729, 730, 1011, 1013
XapI	RAATTY	6 cut(s)	146, 179, 189, 219, 645, 717
XceI	RCATGY	1 cut(s)	970
XmiI	GTMKAC	3 cut(s)	345, 571, 657
XspI	CTAG	4 cut(s)	297, 326, 503, 933
ZraI	GACGTC	1 cut(s)	277
Zsp2I	ATGCAT	1 cut(s)	960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.