Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000818

Physical Location & Seq

Genomic Coordinates Forward (+)

266937 .. 268987

Gene Structure 2051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g00440.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCGTTCATGTGGTATCTGGAACTCCTGGCAGAGTCTGTGATATCGATCAAAAGAAGAACTCTCCGAACTCGAGCCATCAAATTATTAGTTCTTGATGAATCTGATGAAATGTTGAGCAGAGGATTCAAGATCGATCAGATTTATGATGTCTACAGATATCTTCCTCCTGAGCTCCAGGTTTGCTTGATTTCTGCTACACTTCCTCATGAAATTTTGGAGATGACCAACAAGTTTATGACTGAACCTGTAAGGATCCTTGTTAAACGTGATGAGTTGACGTTGGAGGGAATCAAGCAATTTTTCGTGGCTGTCGAAAGAGAGGAATGGAAGTTTGATACGCTTTGTGATCTCTATGATACCCTTACGATTACACAAGCTGTTATTTTCTGCAACACCAAGCGAAAGGTGGACTGGCTCACTGAAAAGATGAGGAGTAATAACTTTACTGTCTCTGCAATGCATGGTGATATGCCTCAGAAGGAAAGAGATGCTATTATGGCTGAGTTTCGTGGTGGTAATACTCGCGTCCTGATCACAACCGATGTTTGGGCCCGGGGCCTTGATGTTCAGCAGGTTTCTTTGGTTATCAATTATGATCTCCCAAACAATCGAGAGCTATACATTCATCGAATTGGTCGTTCTGGACGTTTCGGGCGCAAGGGTGTGGCAATAAACTTTGTGAAAAGTGATGATATTAAGATTTTAAGAGACATCGAGCAGTATTACAGTACGCAGATAGACGAAATGCCGATGAATGTTGCGGATTTGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

259

Amino Acids

30.23

Weight (kDa)

5.78

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51380 AT1G51380 AT1G51380 AT1G51380 AT3G19760
fragaria_vesca	FvH4_4g36800 FvH4_4g36800 FvH4_4g36800 FvH4_6g49811 FvH4_6g49900
malus_domestica	MD09G1053900.v1.1 MD09G1189300.v1.1 MD09G1268200.v1.1 MD09G1268600.v1.1 MD09G1268800.v1.1 MD13G1006800.v1.1 MD15G1056500.v1.1 MD16G1001000.v1.1
prunus_persica	Prupe.1G346100_v2.0.a1 Prupe.3G165200_v2.0.a1
pyrus_communis	pycom111g04510 pycom16g00440
rosa_chinensis	RchiOBHm_Chr0c44g0503461 RchiOBHm_Chr0c44g0503501 RchiOBHm_Chr0c44g0503531 RchiOBHm_Chr0c44g0503561 RchiOBHm_Chr0c44g0503691 RchiOBHm_Chr0c44g0503701 RchiOBHm_Chr0c44g0503721 RchiOBHm_Chr0c44g0503751 RchiOBHm_Chr2g0169961 RchiOBHm_Chr4g0386061 RchiOBHm_Chr4g0386101 RchiOBHm_Chr4g0386151 RchiOBHm_Chr4g0386181 RchiOBHm_Chr4g0386221 RchiOBHm_Chr4g0386241 RchiOBHm_Chr4g0386301 RchiOBHm_Chr4g0386341 RchiOBHm_Chr4g0386361 RchiOBHm_Chr4g0446531
rosa_laevigata	RLG00000005651 RLG00000010170 RLG00000010175 RLG00000021914
rosa_multiflora	Rmu_sc0005526.1_g000001 Rmu_sc0005795.1_g000003 Rmu_sc0013078.1_g000019 Rmu_sc0022031.1_g000001 Rmu_ssc0000389.1_g000007
rosa_roxburghii	Rroxscaffold_5G00333840 Rroxscaffold_5G00386950
rosa_rugosa	Rorug02G0544700 Rorug02G0545100 Rorug04G0372300
rosa_samantha	Rh2AG617000 Rh2AG617300 Rh2CG597900 Rh2DG639700 Rh2DG640100 Rh2DG640400 Rh4AG010700 Rh4AG433900 Rh4BG007600 Rh4BG443100 Rh4DG441700
rosa_wichuraiana	Rw2G051090 Rw4G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	565
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	1 cut(s)	528
AciI	CCGC	1 cut(s)	764
AclWI	GGATC	2 cut(s)	250, 263
AcsI	RAATTY	1 cut(s)	213
AfaI	GTAC	1 cut(s)	733
AfiI	CCNNNNNNNGG	1 cut(s)	549
AgsI	TTSAA	1 cut(s)	130
AjnI	CCWGG	2 cut(s)	27, 177
AluBI	AGCT	3 cut(s)	175, 380, 619
AluI	AGCT	3 cut(s)	175, 380, 619
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	2 cut(s)	457, 705
AlwI	GGATC	2 cut(s)	250, 263
AlwNI	CAGNNNCTG	1 cut(s)	38
Ama87I	CYCGRG	2 cut(s)	72, 555
AoxI	GGCC	2 cut(s)	552, 559
ApaI	GGGCCC	1 cut(s)	556
ApoI	RAATTY	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	660
AspS9I	GGNCC	3 cut(s)	552, 553, 559
AsuC2I	CCSGG	2 cut(s)	556, 557
AsuHPI	GGTGA	1 cut(s)	479
AvaI	CYCGRG	2 cut(s)	72, 555
BaeGI	GKGCMC	1 cut(s)	556
BamHI	GGATCC	1 cut(s)	255
BanII	GRGCYC	2 cut(s)	177, 556
Bbv12I	GWGCWC	1 cut(s)	177
BccI	CCATC	1 cut(s)	86
BciT130I	CCWGG	2 cut(s)	29, 179
BclI	TGATCA	1 cut(s)	534
BcnI	CCSGG	2 cut(s)	556, 557
BcoDI	GTCTC	2 cut(s)	457, 705
BfmI	CTRYAG	1 cut(s)	154
BfuAI	ACCTGC	1 cut(s)	565
Bme1390I	CCNGG	4 cut(s)	29, 179, 556, 557
BmeT110I	CYCGRG	2 cut(s)	72, 555
BmgT120I	GGNCC	3 cut(s)	552, 553, 559
BmiI	GGNNCC	3 cut(s)	257, 554, 560
BmrFI	CCNGG	4 cut(s)	29, 179, 556, 557
BmsI	GCATC	1 cut(s)	481
BpmI	CTGGAG	1 cut(s)	161
Bpu10I	CCTNAGC	1 cut(s)	171
BpuMI	CCSGG	2 cut(s)	556, 557
Bsa29I	ATCGAT	2 cut(s)	47, 135
BsaBI	GATNNNNATC	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	555, 556
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
Bse1I	ACTGG	1 cut(s)	419
Bse3DI	GCAATG	1 cut(s)	465
Bse8I	GATNNNNATC	1 cut(s)	47
BseBI	CCWGG	2 cut(s)	29, 179
BseCI	ATCGAT	2 cut(s)	47, 135
BseDI	CCNNGG	2 cut(s)	555, 556
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	3 cut(s)	162, 491, 495
BseNI	ACTGG	1 cut(s)	419
BseRI	GAGGAG	1 cut(s)	448
BseSI	GKGCMC	1 cut(s)	556
Bsh1236I	CGCG	1 cut(s)	528
BshFI	GGCC	2 cut(s)	554, 561
BshVI	ATCGAT	2 cut(s)	47, 135
BsiHKAI	GWGCWC	1 cut(s)	177
BsiHKCI	CYCGRG	2 cut(s)	72, 555
BsiSI	CCGG	1 cut(s)	556
BslI	CCNNNNNNNGG	1 cut(s)	549
BsmAI	GTCTC	2 cut(s)	457, 705
BsnI	GGCC	2 cut(s)	554, 561
BsoBI	CYCGRG	2 cut(s)	72, 555
Bsp120I	GGGCCC	1 cut(s)	552
Bsp1286I	GDGCHC	2 cut(s)	177, 556
Bsp143I	GATC	7 cut(s)	48, 132, 136, 255, 349, 534, 598
BspACI	CCGC	1 cut(s)	764
BspANI	GGCC	2 cut(s)	554, 561
BspCNI	CTCAG	3 cut(s)	163, 490, 496
BspDI	ATCGAT	2 cut(s)	47, 135
BspFNI	CGCG	1 cut(s)	528
BspHI	TCATGA	1 cut(s)	208
BspLI	GGNNCC	3 cut(s)	257, 554, 560
BspMI	ACCTGC	1 cut(s)	565
BspPI	GGATC	2 cut(s)	250, 263
BsrDI	GCAATG	1 cut(s)	465
BsrI	ACTGG	1 cut(s)	419
BssECI	CCNNGG	2 cut(s)	555, 556
BssMI	GATC	7 cut(s)	48, 132, 136, 255, 349, 534, 598
Bst2UI	CCWGG	2 cut(s)	29, 179
Bst4CI	ACNGT	2 cut(s)	451, 731
BstDEI	CTNAG	3 cut(s)	171, 477, 504
BstFNI	CGCG	1 cut(s)	528
BstHHI	GCGC	1 cut(s)	660
BstKTI	GATC	7 cut(s)	51, 135, 139, 258, 352, 537, 601
BstMAI	GTCTC	2 cut(s)	457, 705
BstMBI	GATC	7 cut(s)	48, 132, 136, 255, 349, 534, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNI	CCWGG	2 cut(s)	29, 179
BstSCI	CCNGG	4 cut(s)	27, 177, 554, 555
BstSFI	CTRYAG	1 cut(s)	154
BstSLI	GKGCMC	1 cut(s)	556
BstUI	CGCG	1 cut(s)	528
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
Bsu15I	ATCGAT	2 cut(s)	47, 135
BsuRI	GGCC	2 cut(s)	554, 561
BsuTUI	ATCGAT	2 cut(s)	47, 135
BtsIMutI	CAGTG	1 cut(s)	420
BveI	ACCTGC	1 cut(s)	565
CaiI	CAGNNNCTG	1 cut(s)	38
CciI	TCATGA	1 cut(s)	208
CfoI	GCGC	1 cut(s)	660
Cfr13I	GGNCC	3 cut(s)	552, 553, 559
Cfr9I	CCCGGG	1 cut(s)	555
ClaI	ATCGAT	2 cut(s)	47, 135
CseI	GACGC	1 cut(s)	517
Csp6I	GTAC	1 cut(s)	732
CviAII	CATG	3 cut(s)	10, 209, 464
CviJI	RGCY	9 cut(s)	77, 175, 311, 380, 418, 503, 554, 561, 619
CviKI_1	RGCY	9 cut(s)	77, 175, 311, 380, 418, 503, 554, 561, 619
CviQI	GTAC	1 cut(s)	732
DdeI	CTNAG	3 cut(s)	171, 477, 504
DpnI	GATC	7 cut(s)	50, 134, 138, 257, 351, 536, 600
DpnII	GATC	7 cut(s)	48, 132, 136, 255, 349, 534, 598
Ecl136II	GAGCTC	1 cut(s)	175
Eco24I	GRGCYC	2 cut(s)	177, 556
Eco32I	GATATC	2 cut(s)	45, 161
Eco53kI	GAGCTC	1 cut(s)	175
Eco88I	CYCGRG	2 cut(s)	72, 555
EcoICRI	GAGCTC	1 cut(s)	175
EcoO109I	RGGNCCY	1 cut(s)	559
EcoRII	CCWGG	2 cut(s)	27, 177
EcoRV	GATATC	2 cut(s)	45, 161
EcoT22I	ATGCAT	1 cut(s)	465
EcoT38I	GRGCYC	2 cut(s)	177, 556
FaeI	CATG	3 cut(s)	13, 212, 467
FatI	CATG	3 cut(s)	9, 208, 463
FbaI	TGATCA	1 cut(s)	534
FblI	GTMKAC	1 cut(s)	153
FriOI	GRGCYC	2 cut(s)	177, 556
GlaI	GCGC	1 cut(s)	659
GsuI	CTGGAG	1 cut(s)	161
HaeIII	GGCC	2 cut(s)	554, 561
HapII	CCGG	1 cut(s)	556
HgaI	GACGC	1 cut(s)	517
HhaI	GCGC	1 cut(s)	660
Hin1II	CATG	3 cut(s)	13, 212, 467
Hin6I	GCGC	1 cut(s)	658
HinP1I	GCGC	1 cut(s)	658
HincII	GTYRAC	1 cut(s)	279
HindII	GTYRAC	1 cut(s)	279
HinfI	GANTC	4 cut(s)	35, 101, 126, 291
HpaII	CCGG	1 cut(s)	556
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	3 cut(s)	154, 279, 412
Hpy188I	TCNGA	4 cut(s)	68, 106, 141, 480
Hpy188III	TCNNGA	8 cut(s)	20, 95, 130, 170, 209, 532, 614, 645
Hpy8I	GTNNAC	3 cut(s)	154, 279, 412
HpyAV	CCTTC	1 cut(s)	475
HpyCH4III	ACNGT	2 cut(s)	451, 731
HpyCH4IV	ACGT	3 cut(s)	268, 281, 649
HpyCH4V	TGCA	3 cut(s)	393, 458, 463
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	3 cut(s)	171, 477, 504
HpySE526I	ACGT	3 cut(s)	268, 281, 649
Hsp92II	CATG	3 cut(s)	13, 212, 467
HspAI	GCGC	1 cut(s)	658
Ksp22I	TGATCA	1 cut(s)	534
Kzo9I	GATC	7 cut(s)	48, 132, 136, 255, 349, 534, 598
LmnI	GCTCC	1 cut(s)	180
LweI	GCATC	1 cut(s)	481
MaeII	ACGT	3 cut(s)	268, 281, 649
MalI	GATC	7 cut(s)	50, 134, 138, 257, 351, 536, 600
MboI	GATC	7 cut(s)	48, 132, 136, 255, 349, 534, 598
MboII	GAAGA	2 cut(s)	69, 155
MflI	RGATCY	1 cut(s)	255
MhlI	GDGCHC	2 cut(s)	177, 556
MluCI	AATT	5 cut(s)	83, 213, 299, 592, 633
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	7 cut(s)	116, 177, 216, 280, 316, 426, 486
Mph1103I	ATGCAT	1 cut(s)	465
MseI	TTAA	3 cut(s)	264, 699, 707
MspI	CCGG	1 cut(s)	556
MspR9I	CCNGG	4 cut(s)	29, 179, 556, 557
MvaI	CCWGG	2 cut(s)	29, 179
MvnI	CGCG	1 cut(s)	528
MwoI	GCNNNNNNNGC	1 cut(s)	500
NciI	CCSGG	2 cut(s)	556, 557
NdeII	GATC	7 cut(s)	48, 132, 136, 255, 349, 534, 598
NlaIII	CATG	3 cut(s)	13, 212, 467
NlaIV	GGNNCC	3 cut(s)	257, 554, 560
NsiI	ATGCAT	1 cut(s)	465
PaeR7I	CTCGAG	1 cut(s)	72
PagI	TCATGA	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	3 cut(s)	312, 637, 646
PfeI	GAWTC	3 cut(s)	101, 126, 291
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Psp124BI	GAGCTC	1 cut(s)	177
Psp6I	CCWGG	2 cut(s)	27, 177
PspGI	CCWGG	2 cut(s)	27, 177
PspN4I	GGNNCC	3 cut(s)	257, 554, 560
PspOMI	GGGCCC	1 cut(s)	552
PspPI	GGNCC	3 cut(s)	552, 553, 559
PspXI	VCTCGAGB	1 cut(s)	72
PstNI	CAGNNNCTG	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	255
RsaI	GTAC	1 cut(s)	733
RsaNI	GTAC	1 cut(s)	732
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	264, 699, 707
Sau3AI	GATC	7 cut(s)	48, 132, 136, 255, 349, 534, 598
Sau96I	GGNCC	3 cut(s)	552, 553, 559
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	4 cut(s)	29, 179, 556, 557
SduI	GDGCHC	2 cut(s)	177, 556
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	154
Sfr274I	CTCGAG	1 cut(s)	72
SlaI	CTCGAG	1 cut(s)	72
SmaI	CCCGGG	1 cut(s)	557
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	5 cut(s)	83, 213, 299, 592, 633
SsiI	CCGC	1 cut(s)	764
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	4 cut(s)	27, 177, 554, 555
TaaI	ACNGT	2 cut(s)	451, 731
TaiI	ACGT	3 cut(s)	271, 284, 652
TaqI	TCGA	7 cut(s)	47, 73, 135, 315, 613, 631, 717
TasI	AATT	5 cut(s)	83, 213, 299, 592, 633
TfiI	GAWTC	3 cut(s)	101, 126, 291
Tru1I	TTAA	3 cut(s)	264, 699, 707
Tru9I	TTAA	3 cut(s)	264, 699, 707
TscAI	CASTG	1 cut(s)	427
TspDTI	ATGAA	5 cut(s)	114, 123, 225, 617, 770
TspMI	CCCGGG	1 cut(s)	555
TspRI	CASTG	1 cut(s)	427
XapI	RAATTY	1 cut(s)	213
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XhoI	CTCGAG	1 cut(s)	72
XmaI	CCCGGG	1 cut(s)	555
XmiI	GTMKAC	1 cut(s)	153
Zsp2I	ATGCAT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.