Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000818

Physical Location & Seq

Genomic Coordinates Reverse (-)

65677353 .. 65680788

Gene Structure 3436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00386950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCAGCCCCCGCGACGACGAGCGTGGTGCCCCTGAACCGAACCAGGCGGGGCGGCGGCATGGTCAACGAGGACAAGCTCGAGTTCGTCACATCCGACGGCATAGAGCCCATCATGAGCTTCGATCAGATGGGCATCAAGGACGATCTCCTCCGCGGTATTTACAACTACGGCTTCGAGAAGCCCTCCGCCATCCAGCAACGGGCCGTCCGGCCCATCATTGAGGGCCGTGACGTCATTGCCCAGGCCCAGTCCGGTACCGGAAAGACCTCCATGATTGCCCTCACCGTCTGCCAAATCGTCGACACCTCCACCAGAGAGGTTCAGGCGTTGATATTGTCTCCGACGAGGGAATTGGCGGCGCAGACAGAGAAGGTGATATTGGCAATTGGTAATTTCATAAATATCCAAGCGCATTCTTGCATTGGAGGCAAAAGCGTCGGTGAGGATATTAGAAAGCTCGAGTATGGAGTTCATGTGGTGTCTGGAACTCCCGGTAGAGTCTGTGATATGATCAAGAGGAGAACTCTGCGCACTCGAGCCATTAAATTATTGATTCTCGATGAGTCTGATGAAATGTTGAGCAGAGGCTTCAAGGATCAGATTTACGATGTGTACAGATATCTTCCACCTGAGCTCCAGGTCTGCTTGATATCGGCTACACTTCCCCATGAAATTTTGGAGATGACTAGCAAGTTTATGACTGAGCCCGTAAGGATCCTGGTTAAACGTGATGAGTTGACTTTGGAGGTGGACTGGCTGACTGAAAAGATGCGATCTAATAACTTTACAGTCTCTGCAATGCATGGAGACATGCCTCAGAAGGAGCGAGATGCTATTATGAATGAGTTCAGAAATGGTACTACTCGGGTTTTGATCACAACAGATGTTTGGGCCCGGGGCCTTGATGTTCAGCAGGCAAGTTCTTTACTTATAGTGTCTTTGGTTATCAATTATGATCTTCCAAACAATCGAGAGCTATACATTCATCGAATTGGTCGTTCGGGTCGTTTTGGACGCAAGGGTGTGGCAATAAACTTTGTCAAAAGCGACGATATCAAGATTTTAAGAGACATTGAACAGTACTACAGTACCCAGATTGACGAAATGCCAATGAATGTCGCAGATTTAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

378

Amino Acids

42.54

Weight (kDa)

6.28

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	64 - 226	9.3e-43	DEAD/DEAH box helicase
Helicase_C	PF00271	236 - 339	1.5e-25	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51380 AT1G51380 AT1G51380 AT1G51380 AT3G19760
fragaria_vesca	FvH4_4g36800 FvH4_4g36800 FvH4_4g36800 FvH4_6g49811 FvH4_6g49900
malus_domestica	MD09G1053900.v1.1 MD09G1189300.v1.1 MD09G1268200.v1.1 MD09G1268600.v1.1 MD09G1268800.v1.1 MD13G1006800.v1.1 MD15G1056500.v1.1 MD16G1001000.v1.1
prunus_persica	Prupe.1G346100_v2.0.a1 Prupe.3G165200_v2.0.a1
pyrus_communis	pycom111g04510 pycom16g00440
rosa_chinensis	RchiOBHm_Chr0c44g0503461 RchiOBHm_Chr0c44g0503501 RchiOBHm_Chr0c44g0503531 RchiOBHm_Chr0c44g0503561 RchiOBHm_Chr0c44g0503691 RchiOBHm_Chr0c44g0503701 RchiOBHm_Chr0c44g0503721 RchiOBHm_Chr0c44g0503751 RchiOBHm_Chr2g0169961 RchiOBHm_Chr4g0386061 RchiOBHm_Chr4g0386101 RchiOBHm_Chr4g0386151 RchiOBHm_Chr4g0386181 RchiOBHm_Chr4g0386221 RchiOBHm_Chr4g0386241 RchiOBHm_Chr4g0386301 RchiOBHm_Chr4g0386341 RchiOBHm_Chr4g0386361 RchiOBHm_Chr4g0446531
rosa_laevigata	RLG00000005651 RLG00000010170 RLG00000010175 RLG00000021914
rosa_multiflora	Rmu_sc0005526.1_g000001 Rmu_sc0005795.1_g000003 Rmu_sc0013078.1_g000019 Rmu_sc0022031.1_g000001 Rmu_ssc0000389.1_g000007
rosa_roxburghii	Rroxscaffold_5G00333840 Rroxscaffold_5G00386950
rosa_rugosa	Rorug02G0544700 Rorug02G0545100 Rorug04G0372300
rosa_samantha	Rh2AG617000 Rh2AG617300 Rh2CG597900 Rh2DG639700 Rh2DG640100 Rh2DG640400 Rh4AG010700 Rh4AG433900 Rh4BG007600 Rh4BG443100 Rh4DG441700
rosa_wichuraiana	Rw2G051090 Rw4G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	237
Acc16I	TGCGCA	1 cut(s)	533
Acc65I	GGTACC	1 cut(s)	257
AccB1I	GGYRCC	2 cut(s)	28, 257
AccI	GTMKAC	1 cut(s)	303
AccII	CGCG	2 cut(s)	14, 156
AciI	CCGC	8 cut(s)	12, 49, 54, 57, 154, 156, 189, 359
AclWI	GGATC	3 cut(s)	606, 712, 725
AcsI	RAATTY	1 cut(s)	675
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	5 cut(s)	259, 617, 862, 1085, 1093
AfiI	CCNNNNNNNGG	1 cut(s)	202
AgsI	TTSAA	2 cut(s)	595, 1079
AjnI	CCWGG	4 cut(s)	44, 243, 639, 720
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	5 cut(s)	79, 120, 460, 637, 979
AluI	AGCT	5 cut(s)	79, 120, 460, 637, 979
Alw21I	GWGCWC	1 cut(s)	639
Alw26I	GTCTC	4 cut(s)	345, 799, 804, 1065
AlwI	GGATC	3 cut(s)	606, 712, 725
AlwNI	CAGNNNCTG	1 cut(s)	797
Ama87I	CYCGRG	5 cut(s)	80, 461, 537, 867, 897
AoxI	GGCC	6 cut(s)	204, 212, 226, 246, 894, 901
ApaI	GGGCCC	1 cut(s)	898
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	675
Asp700I	GAANNNNTTC	1 cut(s)	848
Asp718I	GGTACC	1 cut(s)	257
AspLEI	GCGC	3 cut(s)	364, 415, 534
AspS9I	GGNCC	7 cut(s)	204, 213, 226, 247, 894, 895, 901
AsuC2I	CCSGG	3 cut(s)	495, 898, 899
AsuHPI	GGTGA	3 cut(s)	277, 388, 455
AvaI	CYCGRG	5 cut(s)	80, 461, 537, 867, 897
BaeGI	GKGCMC	2 cut(s)	33, 898
BaeI	ACNNNNGTAYC	2 cut(s)	1075, 1108
BamHI	GGATCC	1 cut(s)	717
BanI	GGYRCC	2 cut(s)	28, 257
BanII	GRGCYC	4 cut(s)	111, 639, 711, 898
Bbv12I	GWGCWC	1 cut(s)	639
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	4 cut(s)	119, 124, 200, 224
BceAI	ACGGC	4 cut(s)	115, 187, 191, 213
BcgI	CGANNNNNNTGC	4 cut(s)	10, 44, 421, 455
BciT130I	CCWGG	4 cut(s)	46, 245, 641, 722
BclI	TGATCA	2 cut(s)	513, 876
BcnI	CCSGG	3 cut(s)	495, 898, 899
BcoDI	GTCTC	4 cut(s)	345, 799, 804, 1065
BfaI	CTAG	1 cut(s)	690
BfmI	CTRYAG	1 cut(s)	1087
BisI	GCNGC	4 cut(s)	6, 55, 58, 360
BlsI	GCNGC	4 cut(s)	7, 56, 59, 361
BmcAI	AGTACT	1 cut(s)	1085
Bme1390I	CCNGG	7 cut(s)	46, 245, 495, 641, 722, 898, 899
BmeT110I	CYCGRG	5 cut(s)	80, 461, 537, 867, 897
BmgT120I	GGNCC	7 cut(s)	204, 213, 226, 247, 894, 895, 901
BmiI	GGNNCC	5 cut(s)	30, 259, 719, 896, 902
BmrFI	CCNGG	7 cut(s)	46, 245, 495, 641, 722, 898, 899
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	3 cut(s)	144, 762, 823
BmuI	ACTGGG	1 cut(s)	244
BplI	GAGNNNNNCTC	4 cut(s)	170, 202, 511, 543
BpmI	CTGGAG	1 cut(s)	623
Bpu10I	CCTNAGC	1 cut(s)	633
BpuMI	CCSGG	3 cut(s)	495, 898, 899
BsaBI	GATNNNNATC	1 cut(s)	134
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	4 cut(s)	154, 243, 897, 898
BsaWI	WCCGGW	2 cut(s)	254, 260
BsaXI	ACNNNNNCTCC	4 cut(s)	462, 492, 621, 651
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse1I	ACTGG	2 cut(s)	250, 761
Bse3DI	GCAATG	2 cut(s)	237, 807
Bse8I	GATNNNNATC	1 cut(s)	134
BseBI	CCWGG	4 cut(s)	46, 245, 641, 722
BseDI	CCNNGG	4 cut(s)	154, 243, 897, 898
BseGI	GGATG	2 cut(s)	92, 192
BseJI	GATNNNNATC	1 cut(s)	134
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMI	GCAATG	2 cut(s)	237, 807
BseMII	CTCAG	3 cut(s)	624, 696, 833
BseNI	ACTGG	2 cut(s)	250, 761
BseRI	GAGGAG	2 cut(s)	140, 535
BseSI	GKGCMC	2 cut(s)	33, 898
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	2 cut(s)	14, 156
BshFI	GGCC	6 cut(s)	206, 214, 228, 248, 896, 903
BshNI	GGYRCC	2 cut(s)	28, 257
BsiHKAI	GWGCWC	1 cut(s)	639
BsiHKCI	CYCGRG	5 cut(s)	80, 461, 537, 867, 897
BsiSI	CCGG	5 cut(s)	211, 255, 261, 495, 898
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmAI	GTCTC	4 cut(s)	345, 799, 804, 1065
BsmI	GAATGC	1 cut(s)	415
BsnI	GGCC	6 cut(s)	206, 214, 228, 248, 896, 903
BsoBI	CYCGRG	5 cut(s)	80, 461, 537, 867, 897
Bsp120I	GGGCCC	1 cut(s)	894
Bsp1286I	GDGCHC	5 cut(s)	33, 111, 639, 711, 898
Bsp1407I	TGTACA	1 cut(s)	615
Bsp143I	GATC	8 cut(s)	124, 145, 513, 598, 717, 776, 876, 958
BspACI	CCGC	8 cut(s)	12, 49, 54, 57, 154, 156, 189, 359
BspANI	GGCC	6 cut(s)	206, 214, 228, 248, 896, 903
BspCNI	CTCAG	3 cut(s)	625, 697, 832
BspFNI	CGCG	2 cut(s)	14, 156
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	5 cut(s)	30, 259, 719, 896, 902
BspPI	GGATC	3 cut(s)	606, 712, 725
BspT107I	GGYRCC	2 cut(s)	28, 257
BsrDI	GCAATG	2 cut(s)	237, 807
BsrGI	TGTACA	1 cut(s)	615
BsrI	ACTGG	2 cut(s)	250, 761
BssECI	CCNNGG	4 cut(s)	154, 243, 897, 898
BssMI	GATC	8 cut(s)	124, 145, 513, 598, 717, 776, 876, 958
BssNI	GRCGYC	1 cut(s)	234
Bst2UI	CCWGG	4 cut(s)	46, 245, 641, 722
Bst4CI	ACNGT	4 cut(s)	289, 793, 1083, 1091
BstACI	GRCGYC	1 cut(s)	234
BstAUI	TGTACA	1 cut(s)	615
BstC8I	GCNNGC	1 cut(s)	918
BstDEI	CTNAG	3 cut(s)	633, 705, 819
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	2 cut(s)	92, 192
BstFNI	CGCG	2 cut(s)	14, 156
BstHHI	GCGC	3 cut(s)	364, 415, 534
BstKTI	GATC	8 cut(s)	127, 148, 516, 601, 720, 779, 879, 961
BstMAI	GTCTC	4 cut(s)	345, 799, 804, 1065
BstMBI	GATC	8 cut(s)	124, 145, 513, 598, 717, 776, 876, 958
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 429
BstNI	CCWGG	4 cut(s)	46, 245, 641, 722
BstNSI	RCATGY	1 cut(s)	817
BstSCI	CCNGG	7 cut(s)	44, 243, 493, 639, 720, 896, 897
BstSFI	CTRYAG	1 cut(s)	1087
BstSLI	GKGCMC	2 cut(s)	33, 898
BstUI	CGCG	2 cut(s)	14, 156
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	717
BstYI	RGATCY	1 cut(s)	717
BsuRI	GGCC	6 cut(s)	206, 214, 228, 248, 896, 903
BtgI	CCRYGG	1 cut(s)	154
BtsCI	GGATG	2 cut(s)	92, 192
Cac8I	GCNNGC	1 cut(s)	918
CaiI	CAGNNNCTG	1 cut(s)	797
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	3 cut(s)	364, 415, 534
Cfr13I	GGNCC	7 cut(s)	204, 213, 226, 247, 894, 895, 901
Cfr42I	CCGCGG	1 cut(s)	157
Cfr9I	CCCGGG	1 cut(s)	897
CseI	GACGC	2 cut(s)	427, 1026
Csp6I	GTAC	5 cut(s)	258, 616, 861, 1084, 1092
CviAII	CATG	7 cut(s)	61, 115, 274, 476, 671, 806, 814
CviQI	GTAC	5 cut(s)	258, 616, 861, 1084, 1092
DdeI	CTNAG	3 cut(s)	633, 705, 819
DpnI	GATC	8 cut(s)	126, 147, 515, 600, 719, 778, 878, 960
DpnII	GATC	8 cut(s)	124, 145, 513, 598, 717, 776, 876, 958
EciI	GGCGGA	1 cut(s)	178
Ecl136II	GAGCTC	1 cut(s)	637
Eco24I	GRGCYC	4 cut(s)	111, 639, 711, 898
Eco32I	GATATC	3 cut(s)	623, 654, 1057
Eco53kI	GAGCTC	1 cut(s)	637
Eco88I	CYCGRG	5 cut(s)	80, 461, 537, 867, 897
EcoICRI	GAGCTC	1 cut(s)	637
EcoO109I	RGGNCCY	1 cut(s)	901
EcoRII	CCWGG	4 cut(s)	44, 243, 639, 720
EcoRV	GATATC	3 cut(s)	623, 654, 1057
EcoT22I	ATGCAT	1 cut(s)	807
EcoT38I	GRGCYC	4 cut(s)	111, 639, 711, 898
FaeI	CATG	7 cut(s)	64, 118, 277, 479, 674, 809, 817
FatI	CATG	7 cut(s)	60, 114, 273, 475, 670, 805, 813
FauI	CCCGC	2 cut(s)	19, 42
FbaI	TGATCA	2 cut(s)	513, 876
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	4 cut(s)	6, 55, 58, 360
FokI	GGATG	2 cut(s)	79, 179
FriOI	GRGCYC	4 cut(s)	111, 639, 711, 898
Fsp4HI	GCNGC	4 cut(s)	6, 55, 58, 360
FspBI	CTAG	1 cut(s)	690
FspI	TGCGCA	1 cut(s)	533
GlaI	GCGC	3 cut(s)	363, 414, 533
GluI	GCNGC	4 cut(s)	6, 55, 58, 360
GsuI	CTGGAG	1 cut(s)	623
HaeIII	GGCC	6 cut(s)	206, 214, 228, 248, 896, 903
HapII	CCGG	5 cut(s)	211, 255, 261, 495, 898
HgaI	GACGC	2 cut(s)	427, 1026
HhaI	GCGC	3 cut(s)	364, 415, 534
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	7 cut(s)	64, 118, 277, 479, 674, 809, 817
Hin6I	GCGC	3 cut(s)	362, 413, 532
HinP1I	GCGC	3 cut(s)	362, 413, 532
HincII	GTYRAC	3 cut(s)	67, 304, 741
HindII	GTYRAC	3 cut(s)	67, 304, 741
HinfI	GANTC	3 cut(s)	501, 556, 566
HpaII	CCGG	5 cut(s)	211, 255, 261, 495, 898
HphI	GGTGA	3 cut(s)	277, 388, 455
Hpy166II	GTNNAC	5 cut(s)	67, 304, 616, 741, 754
Hpy188I	TCNGA	7 cut(s)	97, 129, 345, 571, 603, 822, 854
Hpy188III	TCNNGA	7 cut(s)	115, 178, 486, 517, 560, 974, 1060
Hpy8I	GTNNAC	5 cut(s)	67, 304, 616, 741, 754
Hpy99I	CGWCG	7 cut(s)	19, 22, 101, 305, 349, 443, 1055
HpyAV	CCTTC	2 cut(s)	367, 817
HpyCH4III	ACNGT	4 cut(s)	289, 793, 1083, 1091
HpyCH4IV	ACGT	2 cut(s)	234, 730
HpyCH4V	TGCA	3 cut(s)	423, 800, 805
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 429
HpyF3I	CTNAG	3 cut(s)	633, 705, 819
HpySE526I	ACGT	2 cut(s)	234, 730
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	7 cut(s)	64, 118, 277, 479, 674, 809, 817
HspAI	GCGC	3 cut(s)	362, 413, 532
KpnI	GGTACC	1 cut(s)	261
Ksp22I	TGATCA	2 cut(s)	513, 876
KspI	CCGCGG	1 cut(s)	157
Kzo9I	GATC	8 cut(s)	124, 145, 513, 598, 717, 776, 876, 958
LmnI	GCTCC	2 cut(s)	642, 826
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	3 cut(s)	144, 762, 823
MaeI	CTAG	1 cut(s)	690
MaeII	ACGT	2 cut(s)	234, 730
MaeIII	GTNAC	2 cut(s)	88, 230
MalI	GATC	8 cut(s)	126, 147, 515, 600, 719, 778, 878, 960
MboI	GATC	8 cut(s)	124, 145, 513, 598, 717, 776, 876, 958
MboII	GAAGA	2 cut(s)	617, 953
MfeI	CAATTG	1 cut(s)	387
MflI	RGATCY	1 cut(s)	717
MhlI	GDGCHC	5 cut(s)	33, 111, 639, 711, 898
MluCI	AATT	7 cut(s)	353, 387, 394, 548, 675, 952, 993
MlyI	GAGTC	2 cut(s)	510, 575
MmeI	TCCRAC	2 cut(s)	120, 368
Mph1103I	ATGCAT	1 cut(s)	807
MroXI	GAANNNNTTC	1 cut(s)	848
MseI	TTAA	4 cut(s)	546, 726, 1067, 1130
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	5 cut(s)	211, 255, 261, 495, 898
MspR9I	CCNGG	7 cut(s)	46, 245, 495, 641, 722, 898, 899
MunI	CAATTG	1 cut(s)	387
Mva1269I	GAATGC	1 cut(s)	415
MvaI	CCWGG	4 cut(s)	46, 245, 641, 722
MvnI	CGCG	2 cut(s)	14, 156
MwoI	GCNNNNNNNGC	2 cut(s)	11, 429
NciI	CCSGG	3 cut(s)	495, 898, 899
NdeII	GATC	8 cut(s)	124, 145, 513, 598, 717, 776, 876, 958
NlaIII	CATG	7 cut(s)	64, 118, 277, 479, 674, 809, 817
NlaIV	GGNNCC	5 cut(s)	30, 259, 719, 896, 902
NmuCI	GTSAC	2 cut(s)	88, 230
NsbI	TGCGCA	1 cut(s)	533
NsiI	ATGCAT	1 cut(s)	807
NspI	RCATGY	1 cut(s)	817
PaeR7I	CTCGAG	3 cut(s)	80, 461, 537
PagI	TCATGA	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	3 cut(s)	93, 997, 1006
PctI	GAATGC	1 cut(s)	415
PdmI	GAANNNNTTC	1 cut(s)	848
PfeI	GAWTC	1 cut(s)	556
PkrI	GCNGC	4 cut(s)	7, 56, 59, 361
PleI	GAGTC	2 cut(s)	509, 574
PpsI	GAGTC	2 cut(s)	509, 574
Psp124BI	GAGCTC	1 cut(s)	639
Psp6I	CCWGG	4 cut(s)	44, 243, 639, 720
PspGI	CCWGG	4 cut(s)	44, 243, 639, 720
PspN4I	GGNNCC	5 cut(s)	30, 259, 719, 896, 902
PspOMI	GGGCCC	1 cut(s)	894
PspPI	GGNCC	7 cut(s)	204, 213, 226, 247, 894, 895, 901
PspXI	VCTCGAGB	3 cut(s)	80, 461, 537
PstNI	CAGNNNCTG	1 cut(s)	797
PsuI	RGATCY	1 cut(s)	717
RsaI	GTAC	5 cut(s)	259, 617, 862, 1085, 1093
RsaNI	GTAC	5 cut(s)	258, 616, 861, 1084, 1092
SacI	GAGCTC	1 cut(s)	639
SacII	CCGCGG	1 cut(s)	157
SalI	GTCGAC	1 cut(s)	302
SaqAI	TTAA	4 cut(s)	546, 726, 1067, 1130
SatI	GCNGC	4 cut(s)	6, 55, 58, 360
Sau3AI	GATC	8 cut(s)	124, 145, 513, 598, 717, 776, 876, 958
Sau96I	GGNCC	7 cut(s)	204, 213, 226, 247, 894, 895, 901
ScaI	AGTACT	1 cut(s)	1085
SchI	GAGTC	2 cut(s)	510, 575
ScrFI	CCNGG	7 cut(s)	46, 245, 495, 641, 722, 898, 899
SduI	GDGCHC	5 cut(s)	33, 111, 639, 711, 898
SfaNI	GCATC	3 cut(s)	144, 762, 823
SfcI	CTRYAG	1 cut(s)	1087
Sfr274I	CTCGAG	3 cut(s)	80, 461, 537
Sfr303I	CCGCGG	1 cut(s)	157
SgrBI	CCGCGG	1 cut(s)	157
SlaI	CTCGAG	3 cut(s)	80, 461, 537
SmaI	CCCGGG	1 cut(s)	899
SmlI	CTYRAG	3 cut(s)	80, 461, 537
SmoI	CTYRAG	3 cut(s)	80, 461, 537
Sse9I	AATT	7 cut(s)	353, 387, 394, 548, 675, 952, 993
SsiI	CCGC	8 cut(s)	12, 49, 54, 57, 154, 156, 189, 359
SspMI	CTAG	1 cut(s)	690
SstI	GAGCTC	1 cut(s)	639
StyD4I	CCNGG	7 cut(s)	44, 243, 493, 639, 720, 896, 897
TaaI	ACNGT	4 cut(s)	289, 793, 1083, 1091
TaiI	ACGT	2 cut(s)	237, 733
TaqI	TCGA	9 cut(s)	81, 123, 177, 303, 462, 538, 561, 973, 991
TasI	AATT	7 cut(s)	353, 387, 394, 548, 675, 952, 993
TatI	WGTACW	2 cut(s)	615, 1083
TauI	GCSGC	3 cut(s)	57, 60, 362
TfiI	GAWTC	1 cut(s)	556
Tru1I	TTAA	4 cut(s)	546, 726, 1067, 1130
Tru9I	TTAA	4 cut(s)	546, 726, 1067, 1130
TseFI	GTSAC	2 cut(s)	88, 230
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	88, 230
TspDTI	ATGAA	7 cut(s)	388, 464, 588, 687, 857, 977, 1130
TspMI	CCCGGG	1 cut(s)	897
XapI	RAATTY	1 cut(s)	675
XceI	RCATGY	1 cut(s)	817
XhoI	CTCGAG	3 cut(s)	80, 461, 537
XmaI	CCCGGG	1 cut(s)	897
XmiI	GTMKAC	1 cut(s)	303
XmnI	GAANNNNTTC	1 cut(s)	848
XspI	CTAG	1 cut(s)	690
ZraI	GACGTC	1 cut(s)	235
ZrmI	AGTACT	1 cut(s)	1085
Zsp2I	ATGCAT	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.