Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022031.1

Orthogroup ID

OG0000818

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1066

Gene Structure 1066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022031.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 709 bp

ggatgcttttgtccctgcttccgtgggttatggctatgaggttcagatcggatcgaggaagctctgcttcgatttaggaccgttctatggtcatcagcttggtgtaggggatggatgtggcgtgtcaaggcgatgcagcggcggaagtcttcggcacggcggctttttgatgagcggtggcggcatgatggcggaggggctcgtcggctgcggcctgcgggagtggggctttattttctgcaacacaaggcgaaaagtggactggcttactgaaaagatgcggactagtaacttttctgtgtctgcaatgcatggagacatgcctcagaaggagcgagctgatgctattatgaaagagtttcagaaaggtctttcacgagtcctcatcacaactgatgtttgcgcccggggcattgatgttcagcaggtttcgctggttatcaactatgatcttccaaataatcgagagctatacatgcataggattggtcgttcgggtcggtttggacgaaagggtgcggcaataaactttgtcaaaaaagatgatatcaggatcctaagaaagatgatacctttagtttctgctcctactgaatttgattttgcagataaaatcctttcgtataaaatctggcatattcaaagaaaaccggctataagtatatctctagcatttatatacagaaatgaactcaatgcaaacaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

235

Amino Acids

26.27

Weight (kDa)

9.55

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51380 AT1G51380 AT1G51380 AT1G51380 AT3G19760
fragaria_vesca	FvH4_4g36800 FvH4_4g36800 FvH4_4g36800 FvH4_6g49811 FvH4_6g49900
malus_domestica	MD09G1053900.v1.1 MD09G1189300.v1.1 MD09G1268200.v1.1 MD09G1268600.v1.1 MD09G1268800.v1.1 MD13G1006800.v1.1 MD15G1056500.v1.1 MD16G1001000.v1.1
prunus_persica	Prupe.1G346100_v2.0.a1 Prupe.3G165200_v2.0.a1
pyrus_communis	pycom111g04510 pycom16g00440
rosa_chinensis	RchiOBHm_Chr0c44g0503461 RchiOBHm_Chr0c44g0503501 RchiOBHm_Chr0c44g0503531 RchiOBHm_Chr0c44g0503561 RchiOBHm_Chr0c44g0503691 RchiOBHm_Chr0c44g0503701 RchiOBHm_Chr0c44g0503721 RchiOBHm_Chr0c44g0503751 RchiOBHm_Chr2g0169961 RchiOBHm_Chr4g0386061 RchiOBHm_Chr4g0386101 RchiOBHm_Chr4g0386151 RchiOBHm_Chr4g0386181 RchiOBHm_Chr4g0386221 RchiOBHm_Chr4g0386241 RchiOBHm_Chr4g0386301 RchiOBHm_Chr4g0386341 RchiOBHm_Chr4g0386361 RchiOBHm_Chr4g0446531
rosa_laevigata	RLG00000005651 RLG00000010170 RLG00000010175 RLG00000021914
rosa_multiflora	Rmu_sc0005526.1_g000001 Rmu_sc0005795.1_g000003 Rmu_sc0013078.1_g000019 Rmu_sc0022031.1_g000001 Rmu_ssc0000389.1_g000007
rosa_roxburghii	Rroxscaffold_5G00333840 Rroxscaffold_5G00386950
rosa_rugosa	Rorug02G0544700 Rorug02G0545100 Rorug04G0372300
rosa_samantha	Rh2AG617000 Rh2AG617300 Rh2CG597900 Rh2DG639700 Rh2DG640100 Rh2DG640400 Rh4AG010700 Rh4AG433900 Rh4BG007600 Rh4BG443100 Rh4DG441700
rosa_wichuraiana	Rw2G051090 Rw4G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	416
AccBSI	CCGCTC	1 cut(s)	175
AclWI	GGATC	3 cut(s)	59, 548, 561
AcsI	RAATTY	1 cut(s)	594
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	1 cut(s)	642
AhlI	ACTAGT	1 cut(s)	285
AloI	GAACNNNNNNTCC	2 cut(s)	476, 508
AluBI	AGCT	4 cut(s)	62, 98, 339, 470
AluI	AGCT	4 cut(s)	62, 98, 339, 470
Alw26I	GTCTC	1 cut(s)	310
AlwI	GGATC	3 cut(s)	59, 548, 561
Ama87I	CYCGRG	1 cut(s)	406
AoxI	GGCC	1 cut(s)	212
ApeKI	GCWGC	2 cut(s)	136, 208
ApoI	RAATTY	1 cut(s)	594
AspLEI	GCGC	1 cut(s)	405
AspS9I	GGNCC	1 cut(s)	78
AsuC2I	CCSGG	2 cut(s)	407, 408
AvaI	CYCGRG	1 cut(s)	406
AvaII	GGWCC	1 cut(s)	78
BamHI	GGATCC	1 cut(s)	553
BanII	GRGCYC	1 cut(s)	202
BauI	CACGAG	1 cut(s)	376
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	148, 195
BccI	CCATC	2 cut(s)	105, 182
BceAI	ACGGC	1 cut(s)	173
BcnI	CCSGG	2 cut(s)	407, 408
BcoDI	GTCTC	1 cut(s)	310
BcuI	ACTAGT	1 cut(s)	285
BfaI	CTAG	2 cut(s)	286, 669
BfuAI	ACCTGC	1 cut(s)	416
BisI	GCNGC	7 cut(s)	137, 140, 161, 182, 209, 212, 520
BlsI	GCNGC	7 cut(s)	138, 141, 162, 183, 210, 213, 521
Bme1390I	CCNGG	2 cut(s)	407, 408
Bme18I	GGWCC	1 cut(s)	78
BmeT110I	CYCGRG	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	555
BmrFI	CCNGG	2 cut(s)	407, 408
BmsI	GCATC	3 cut(s)	123, 268, 332
BpiI	GAAGAC	1 cut(s)	141
BpuMI	CCSGG	2 cut(s)	407, 408
BsaJI	CCNNGG	3 cut(s)	22, 406, 407
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse118I	RCCGGY	1 cut(s)	650
Bse1I	ACTGG	1 cut(s)	267
Bse3DI	GCAATG	1 cut(s)	313
BseDI	CCNNGG	3 cut(s)	22, 406, 407
BseGI	GGATG	3 cut(s)	8, 116, 120
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	1 cut(s)	267
BseXI	GCAGC	2 cut(s)	148, 195
BshFI	GGCC	1 cut(s)	214
BsiHKCI	CYCGRG	1 cut(s)	406
BsiSI	CCGG	2 cut(s)	407, 651
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	214
BsoBI	CYCGRG	1 cut(s)	406
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	4 cut(s)	46, 51, 449, 553
BspANI	GGCC	1 cut(s)	214
BspCNI	CTCAG	1 cut(s)	338
BspLI	GGNNCC	1 cut(s)	555
BspMI	ACCTGC	1 cut(s)	416
BspPI	GGATC	3 cut(s)	59, 548, 561
BsrBI	CCGCTC	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	313
BsrFI	RCCGGY	1 cut(s)	650
BsrI	ACTGG	1 cut(s)	267
BssAI	RCCGGY	1 cut(s)	650
BssECI	CCNNGG	3 cut(s)	22, 406, 407
BssMI	GATC	4 cut(s)	46, 51, 449, 553
BssSI	CACGAG	1 cut(s)	376
Bst2BI	CACGAG	1 cut(s)	376
Bst4CI	ACNGT	1 cut(s)	82
BstC8I	GCNNGC	2 cut(s)	216, 337
BstDEI	CTNAG	2 cut(s)	325, 558
BstDSI	CCRYGG	1 cut(s)	22
BstF5I	GGATG	3 cut(s)	8, 116, 120
BstHHI	GCGC	1 cut(s)	405
BstKTI	GATC	4 cut(s)	49, 54, 452, 556
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	4 cut(s)	46, 51, 449, 553
BstMWI	GCNNNNNNNGC	4 cut(s)	181, 409, 431, 476
BstNSI	RCATGY	2 cut(s)	323, 479
BstSCI	CCNGG	2 cut(s)	405, 406
BstV1I	GCAGC	2 cut(s)	148, 195
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	553
BsuRI	GGCC	1 cut(s)	214
BtgI	CCRYGG	1 cut(s)	22
BtgZI	GCGATG	1 cut(s)	146
BtsCI	GGATG	3 cut(s)	8, 116, 120
BveI	ACCTGC	1 cut(s)	416
Cac8I	GCNNGC	2 cut(s)	216, 337
CfoI	GCGC	1 cut(s)	405
Cfr10I	RCCGGY	1 cut(s)	650
Cfr13I	GGNCC	1 cut(s)	78
Cfr9I	CCCGGG	1 cut(s)	406
CviAII	CATG	4 cut(s)	185, 312, 320, 476
DdeI	CTNAG	2 cut(s)	325, 558
DpnI	GATC	4 cut(s)	48, 53, 451, 555
DpnII	GATC	4 cut(s)	46, 51, 449, 553
EciI	GGCGGA	2 cut(s)	157, 207
Eco24I	GRGCYC	1 cut(s)	202
Eco32I	GATATC	1 cut(s)	548
Eco47I	GGWCC	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	406
EcoRV	GATATC	1 cut(s)	548
EcoT22I	ATGCAT	2 cut(s)	313, 481
EcoT38I	GRGCYC	1 cut(s)	202
FaeI	CATG	4 cut(s)	188, 315, 323, 479
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FatI	CATG	4 cut(s)	184, 311, 319, 475
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	7 cut(s)	137, 140, 161, 182, 209, 212, 520
FokI	GGATG	3 cut(s)	15, 123, 127
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	7 cut(s)	137, 140, 161, 182, 209, 212, 520
FspBI	CTAG	2 cut(s)	286, 669
GlaI	GCGC	1 cut(s)	404
GluI	GCNGC	7 cut(s)	137, 140, 161, 182, 209, 212, 520
HaeIII	GGCC	1 cut(s)	214
HapII	CCGG	2 cut(s)	407, 651
HhaI	GCGC	1 cut(s)	405
Hin1II	CATG	4 cut(s)	188, 315, 323, 479
Hin6I	GCGC	1 cut(s)	403
HinP1I	GCGC	1 cut(s)	403
HinfI	GANTC	1 cut(s)	379
HpaII	CCGG	2 cut(s)	407, 651
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	4 cut(s)	46, 51, 328, 364
Hpy188III	TCNNGA	3 cut(s)	376, 465, 551
Hpy8I	GTNNAC	1 cut(s)	260
Hpy99I	CGWCG	1 cut(s)	207
HpyAV	CCTTC	1 cut(s)	323
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4V	TGCA	7 cut(s)	136, 241, 306, 311, 479, 606, 699
HpyF10VI	GCNNNNNNNGC	4 cut(s)	181, 409, 431, 476
HpyF3I	CTNAG	2 cut(s)	325, 558
Hsp92II	CATG	4 cut(s)	188, 315, 323, 479
HspAI	GCGC	1 cut(s)	403
Kzo9I	GATC	4 cut(s)	46, 51, 449, 553
LmnI	GCTCC	2 cut(s)	332, 590
LpnPI	CCDG	9 cut(s)	28, 228, 248, 411, 420, 420, 536, 617, 664
Lsp1109I	GCAGC	2 cut(s)	148, 195
LweI	GCATC	3 cut(s)	123, 268, 332
MaeI	CTAG	2 cut(s)	286, 669
MaeIII	GTNAC	1 cut(s)	288
MalI	GATC	4 cut(s)	48, 53, 451, 555
MbiI	CCGCTC	1 cut(s)	175
MboI	GATC	4 cut(s)	46, 51, 449, 553
MboII	GAAGA	2 cut(s)	141, 444
MflI	RGATCY	1 cut(s)	553
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	2 cut(s)	594, 704
MlyI	GAGTC	1 cut(s)	388
MnlI	CCTC	5 cut(s)	32, 49, 188, 334, 393
Mph1103I	ATGCAT	2 cut(s)	313, 481
MseI	TTAA	1 cut(s)	707
MspA1I	CMGCKG	1 cut(s)	139
MspI	CCGG	2 cut(s)	407, 651
MspR9I	CCNGG	2 cut(s)	407, 408
MwoI	GCNNNNNNNGC	4 cut(s)	181, 409, 431, 476
NciI	CCSGG	2 cut(s)	407, 408
NdeII	GATC	4 cut(s)	46, 51, 449, 553
NlaIII	CATG	4 cut(s)	188, 315, 323, 479
NlaIV	GGNNCC	1 cut(s)	555
NsiI	ATGCAT	2 cut(s)	313, 481
NspI	RCATGY	2 cut(s)	323, 479
PcsI	WCGNNNNNNNCGW	1 cut(s)	506
PkrI	GCNGC	7 cut(s)	138, 141, 162, 183, 210, 213, 521
PleI	GAGTC	1 cut(s)	387
PpsI	GAGTC	1 cut(s)	387
PspN4I	GGNNCC	1 cut(s)	555
PspPI	GGNCC	1 cut(s)	78
PsuI	RGATCY	1 cut(s)	553
SaqAI	TTAA	1 cut(s)	707
SatI	GCNGC	7 cut(s)	137, 140, 161, 182, 209, 212, 520
Sau3AI	GATC	4 cut(s)	46, 51, 449, 553
Sau96I	GGNCC	1 cut(s)	78
SchI	GAGTC	1 cut(s)	388
ScrFI	CCNGG	2 cut(s)	407, 408
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	8 cut(s)	43, 64, 100, 341, 371, 430, 472, 575
SfaNI	GCATC	3 cut(s)	123, 268, 332
SinI	GGWCC	1 cut(s)	78
SmaI	CCCGGG	1 cut(s)	408
SpeI	ACTAGT	1 cut(s)	285
Sse9I	AATT	2 cut(s)	594, 704
SspMI	CTAG	2 cut(s)	286, 669
StyD4I	CCNGG	2 cut(s)	405, 406
TaaI	ACNGT	1 cut(s)	82
TaqI	TCGA	3 cut(s)	54, 70, 464
TasI	AATT	2 cut(s)	594, 704
TauI	GCSGC	5 cut(s)	142, 163, 184, 214, 522
Tru1I	TTAA	1 cut(s)	707
Tru9I	TTAA	1 cut(s)	707
TseI	GCWGC	2 cut(s)	136, 208
TspDTI	ATGAA	2 cut(s)	366, 703
TspGWI	ACGGA	1 cut(s)	11
TspMI	CCCGGG	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	78
XapI	RAATTY	1 cut(s)	594
XceI	RCATGY	2 cut(s)	323, 479
XmaI	CCCGGG	1 cut(s)	406
XspI	CTAG	2 cut(s)	286, 669
Zsp2I	ATGCAT	2 cut(s)	313, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.