Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000818

Physical Location & Seq

Genomic Coordinates Reverse (-)

84129946 .. 84130263

Gene Structure 318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG617000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCATGGAGACATGCCTCAGAAAGAGAGAGATGCTATAATGAAAGACTTTAAGAACAGTGAATCACGAATCCTCATCACAACAGATGTTTGGGCTCGAGGCATCGATGTTCAACACGTTTCGTTGGTTATCAACTATGATCTTCCAAACAATCGAGAGCTGTACATTCATAGAATTGGTCGTTCGGGTCGTTTTGGACGCAAAGGTGTGGCAATCAACTTTGTCAAGAACGATGATATCAGGATTTTAAGAGACATTGAACAGTACTACAGTACCCAGATTGATGAGATGCCCATGAATGTGGCTGATTTAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

105

Amino Acids

12.29

Weight (kDa)

6.27

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	1 - 66	1.4e-26	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51380 AT1G51380 AT1G51380 AT1G51380 AT3G19760
fragaria_vesca	FvH4_4g36800 FvH4_4g36800 FvH4_4g36800 FvH4_6g49811 FvH4_6g49900
malus_domestica	MD09G1053900.v1.1 MD09G1189300.v1.1 MD09G1268200.v1.1 MD09G1268600.v1.1 MD09G1268800.v1.1 MD13G1006800.v1.1 MD15G1056500.v1.1 MD16G1001000.v1.1
prunus_persica	Prupe.1G346100_v2.0.a1 Prupe.3G165200_v2.0.a1
pyrus_communis	pycom111g04510 pycom16g00440
rosa_chinensis	RchiOBHm_Chr0c44g0503461 RchiOBHm_Chr0c44g0503501 RchiOBHm_Chr0c44g0503531 RchiOBHm_Chr0c44g0503561 RchiOBHm_Chr0c44g0503691 RchiOBHm_Chr0c44g0503701 RchiOBHm_Chr0c44g0503721 RchiOBHm_Chr0c44g0503751 RchiOBHm_Chr2g0169961 RchiOBHm_Chr4g0386061 RchiOBHm_Chr4g0386101 RchiOBHm_Chr4g0386151 RchiOBHm_Chr4g0386181 RchiOBHm_Chr4g0386221 RchiOBHm_Chr4g0386241 RchiOBHm_Chr4g0386301 RchiOBHm_Chr4g0386341 RchiOBHm_Chr4g0386361 RchiOBHm_Chr4g0446531
rosa_laevigata	RLG00000005651 RLG00000010170 RLG00000010175 RLG00000021914
rosa_multiflora	Rmu_sc0005526.1_g000001 Rmu_sc0005795.1_g000003 Rmu_sc0013078.1_g000019 Rmu_sc0022031.1_g000001 Rmu_ssc0000389.1_g000007
rosa_roxburghii	Rroxscaffold_5G00333840 Rroxscaffold_5G00386950
rosa_rugosa	Rorug02G0544700 Rorug02G0545100 Rorug04G0372300
rosa_samantha	Rh2AG617000 Rh2AG617300 Rh2CG597900 Rh2DG639700 Rh2DG640100 Rh2DG640400 Rh4AG010700 Rh4AG433900 Rh4BG007600 Rh4BG443100 Rh4DG441700
rosa_wichuraiana	Rw2G051090 Rw4G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	3 cut(s)	164, 266, 274
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	113, 260
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw26I	GTCTC	2 cut(s)	3, 246
Ama87I	CYCGRG	1 cut(s)	96
AvaI	CYCGRG	1 cut(s)	96
BaeI	ACNNNNGTAYC	2 cut(s)	256, 289
BanII	GRGCYC	1 cut(s)	97
BcoDI	GTCTC	2 cut(s)	3, 246
BfmI	CTRYAG	1 cut(s)	268
BmcAI	AGTACT	1 cut(s)	266
BmeT110I	CYCGRG	1 cut(s)	96
BmsI	GCATC	3 cut(s)	22, 111, 279
Bsa29I	ATCGAT	1 cut(s)	105
BseCI	ATCGAT	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	32
BshVI	ATCGAT	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	96
BsmAI	GTCTC	2 cut(s)	3, 246
BsoBI	CYCGRG	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp1407I	TGTACA	1 cut(s)	162
Bsp143I	GATC	1 cut(s)	139
BspCNI	CTCAG	1 cut(s)	31
BspDI	ATCGAT	1 cut(s)	105
BsrGI	TGTACA	1 cut(s)	162
BssMI	GATC	1 cut(s)	139
Bst4CI	ACNGT	3 cut(s)	59, 264, 272
BstAUI	TGTACA	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	18
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	2 cut(s)	3, 246
BstMBI	GATC	1 cut(s)	139
BstNSI	RCATGY	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	268
BstXI	CCANNNNNNTGG	1 cut(s)	301
Bsu15I	ATCGAT	1 cut(s)	105
BsuTUI	ATCGAT	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	64
ClaI	ATCGAT	1 cut(s)	105
CseI	GACGC	1 cut(s)	207
Csp6I	GTAC	3 cut(s)	163, 265, 273
CviAII	CATG	3 cut(s)	5, 13, 295
CviJI	RGCY	3 cut(s)	95, 160, 305
CviKI_1	RGCY	3 cut(s)	95, 160, 305
CviQI	GTAC	3 cut(s)	163, 265, 273
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	97
Eco32I	GATATC	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	96
EcoRV	GATATC	1 cut(s)	238
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	97
FaeI	CATG	3 cut(s)	8, 16, 298
FaiI	YATR	7 cut(s)	6, 14, 38, 138, 171, 296, 316
FatI	CATG	3 cut(s)	4, 12, 294
FriOI	GRGCYC	1 cut(s)	97
HgaI	GACGC	1 cut(s)	207
Hin1II	CATG	3 cut(s)	8, 16, 298
HinfI	GANTC	2 cut(s)	62, 69
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	4 cut(s)	66, 155, 226, 241
HpyCH4III	ACNGT	3 cut(s)	59, 264, 272
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	8, 16, 298
Kzo9I	GATC	1 cut(s)	139
LpnPI	CCDG	2 cut(s)	226, 290
LweI	GCATC	3 cut(s)	22, 111, 279
MaeII	ACGT	1 cut(s)	117
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	1 cut(s)	174
MnlI	CCTC	3 cut(s)	27, 83, 92
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	51, 248, 311
MslI	CAYNNNNRTG	1 cut(s)	299
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	3 cut(s)	8, 16, 298
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	16
PaeR7I	CTCGAG	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	62, 69
PspXI	VCTCGAGB	1 cut(s)	96
RsaI	GTAC	3 cut(s)	164, 266, 274
RsaNI	GTAC	3 cut(s)	163, 265, 273
RseI	CAYNNNNRTG	1 cut(s)	299
SaqAI	TTAA	3 cut(s)	51, 248, 311
Sau3AI	GATC	1 cut(s)	139
ScaI	AGTACT	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	3 cut(s)	120, 162, 208
SfaNI	GCATC	3 cut(s)	22, 111, 279
SfcI	CTRYAG	1 cut(s)	268
Sfr274I	CTCGAG	1 cut(s)	96
SlaI	CTCGAG	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	299
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	1 cut(s)	174
TaaI	ACNGT	3 cut(s)	59, 264, 272
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	3 cut(s)	97, 105, 154
TasI	AATT	1 cut(s)	174
TatI	WGTACW	2 cut(s)	162, 264
TfiI	GAWTC	2 cut(s)	62, 69
Tru1I	TTAA	3 cut(s)	51, 248, 311
Tru9I	TTAA	3 cut(s)	51, 248, 311
TscAI	CASTG	1 cut(s)	64
TspDTI	ATGAA	3 cut(s)	56, 158, 311
TspRI	CASTG	1 cut(s)	64
XceI	RCATGY	1 cut(s)	16
XhoI	CTCGAG	1 cut(s)	96
ZrmI	AGTACT	1 cut(s)	266
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.