Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000818

Physical Location & Seq

Genomic Coordinates Forward (+)

3799749 .. 3800096

Gene Structure 348 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1056500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCGCAGCCGTGATCACACAGTTTCTGCCACCCACGGAGACATGGACCAAAACACGAGAGATATTATCATGAGAGAGTTTCGGTCTGGTTCTTCTCGTGTGCTCATAACCACTGATCTCTTGGCCCGTGATATTGATGTCCAGCAGGTCTCTCTTGTGATTAATTATGACCTTCCAACACAACCGGAGAACTACCTCCATCGTATTGGTTGTAGTGGGAGGTTTGGGAGGAAGGGTGTTGCCATCAATTTCGTCACCAAGGACGATGACAGGATGTTGTTTGATATCCAGAAGTTTTATAATGTTATCATTGAGGAACTGCCGGCAAATGTTGCTGATCTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

116

Amino Acids

13.18

Weight (kDa)

5.5

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	5 - 76	3.5e-21	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51380 AT1G51380 AT1G51380 AT1G51380 AT3G19760
fragaria_vesca	FvH4_4g36800 FvH4_4g36800 FvH4_4g36800 FvH4_6g49811 FvH4_6g49900
malus_domestica	MD09G1053900.v1.1 MD09G1189300.v1.1 MD09G1268200.v1.1 MD09G1268600.v1.1 MD09G1268800.v1.1 MD13G1006800.v1.1 MD15G1056500.v1.1 MD16G1001000.v1.1
prunus_persica	Prupe.1G346100_v2.0.a1 Prupe.3G165200_v2.0.a1
pyrus_communis	pycom111g04510 pycom16g00440
rosa_chinensis	RchiOBHm_Chr0c44g0503461 RchiOBHm_Chr0c44g0503501 RchiOBHm_Chr0c44g0503531 RchiOBHm_Chr0c44g0503561 RchiOBHm_Chr0c44g0503691 RchiOBHm_Chr0c44g0503701 RchiOBHm_Chr0c44g0503721 RchiOBHm_Chr0c44g0503751 RchiOBHm_Chr2g0169961 RchiOBHm_Chr4g0386061 RchiOBHm_Chr4g0386101 RchiOBHm_Chr4g0386151 RchiOBHm_Chr4g0386181 RchiOBHm_Chr4g0386221 RchiOBHm_Chr4g0386241 RchiOBHm_Chr4g0386301 RchiOBHm_Chr4g0386341 RchiOBHm_Chr4g0386361 RchiOBHm_Chr4g0446531
rosa_laevigata	RLG00000005651 RLG00000010170 RLG00000010175 RLG00000021914
rosa_multiflora	Rmu_sc0005526.1_g000001 Rmu_sc0005795.1_g000003 Rmu_sc0013078.1_g000019 Rmu_sc0022031.1_g000001 Rmu_ssc0000389.1_g000007
rosa_roxburghii	Rroxscaffold_5G00333840 Rroxscaffold_5G00386950
rosa_rugosa	Rorug02G0544700 Rorug02G0545100 Rorug04G0372300
rosa_samantha	Rh2AG617000 Rh2AG617300 Rh2CG597900 Rh2DG639700 Rh2DG640100 Rh2DG640400 Rh4AG010700 Rh4AG433900 Rh4BG007600 Rh4BG443100 Rh4DG441700
rosa_wichuraiana	Rw2G051090 Rw4G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	300
Acc16I	TGCGCA	1 cut(s)	5
Acc36I	ACCTGC	1 cut(s)	136
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	33, 154
AlwNI	CAGNNNCTG	1 cut(s)	26
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	1 cut(s)	6
AseI	ATTAAT	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	2 cut(s)	46, 124
AsuHPI	GGTGA	1 cut(s)	247
AvaII	GGWCC	1 cut(s)	46
BauI	CACGAG	2 cut(s)	55, 96
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	2 cut(s)	207, 251
BclI	TGATCA	1 cut(s)	13
BcoDI	GTCTC	2 cut(s)	33, 154
BfuAI	ACCTGC	1 cut(s)	136
BisI	GCNGC	1 cut(s)	7
BlsI	GCNGC	1 cut(s)	8
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	2 cut(s)	46, 124
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	2 cut(s)	34, 258
BsaWI	WCCGGW	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	220, 250
Bse118I	RCCGGY	1 cut(s)	322
BseDI	CCNNGG	2 cut(s)	34, 258
BseGI	GGATG	1 cut(s)	279
BseXI	GCAGC	1 cut(s)	18
BshFI	GGCC	1 cut(s)	125
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	185, 323
BsmAI	GTCTC	2 cut(s)	33, 154
BsnI	GGCC	1 cut(s)	125
Bso31I	GGTCTC	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	13, 115, 337
BspANI	GGCC	1 cut(s)	125
BspHI	TCATGA	1 cut(s)	69
BspMI	ACCTGC	1 cut(s)	136
BspTNI	GGTCTC	1 cut(s)	154
BsrFI	RCCGGY	1 cut(s)	322
BssAI	RCCGGY	1 cut(s)	322
BssECI	CCNNGG	2 cut(s)	34, 258
BssMI	GATC	3 cut(s)	13, 115, 337
BssSI	CACGAG	2 cut(s)	55, 96
BssT1I	CCWWGG	1 cut(s)	258
Bst2BI	CACGAG	2 cut(s)	55, 96
Bst4CI	ACNGT	1 cut(s)	22
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	324
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	3 cut(s)	16, 118, 340
BstMAI	GTCTC	2 cut(s)	33, 154
BstMBI	GATC	3 cut(s)	13, 115, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstV1I	GCAGC	1 cut(s)	18
BstXI	CCANNNNNNTGG	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	34
BtsCI	GGATG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	111
BveI	ACCTGC	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	324
CaiI	CAGNNNCTG	1 cut(s)	26
CciI	TCATGA	1 cut(s)	69
CfoI	GCGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	322
Cfr13I	GGNCC	2 cut(s)	46, 124
CviAII	CATG	2 cut(s)	43, 70
CviJI	RGCY	2 cut(s)	9, 125
CviKI_1	RGCY	2 cut(s)	9, 125
DpnI	GATC	3 cut(s)	15, 117, 339
DpnII	GATC	3 cut(s)	13, 115, 337
Eco130I	CCWWGG	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	154
Eco32I	GATATC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	46
EcoRV	GATATC	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	2 cut(s)	46, 73
FaiI	YATR	5 cut(s)	44, 71, 107, 168, 300
FatI	CATG	2 cut(s)	42, 69
FbaI	TGATCA	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	7
FokI	GGATG	1 cut(s)	286
Fsp4HI	GCNGC	1 cut(s)	7
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	7
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	2 cut(s)	185, 323
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	46, 73
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HpaII	CCGG	2 cut(s)	185, 323
HphI	GGTGA	1 cut(s)	247
Hpy188III	TCNNGA	2 cut(s)	70, 289
HpyAV	CCTTC	2 cut(s)	182, 226
HpyCH4III	ACNGT	1 cut(s)	22
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
Hsp92II	CATG	2 cut(s)	46, 73
HspAI	GCGC	1 cut(s)	4
KroI	GCCGGC	1 cut(s)	322
KroNI	GCCGGC	1 cut(s)	324
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	3 cut(s)	13, 115, 337
LpnPI	CCDG	7 cut(s)	72, 131, 155, 198, 256, 302, 336
Lsp1109I	GCAGC	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	3 cut(s)	15, 117, 339
MboI	GATC	3 cut(s)	13, 115, 337
MboII	GAAGA	1 cut(s)	84
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	2 cut(s)	163, 247
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	4 cut(s)	206, 213, 222, 307
MroNI	GCCGGC	1 cut(s)	322
MseI	TTAA	1 cut(s)	162
MspI	CCGG	2 cut(s)	185, 323
MwoI	GCNNNNNNNGC	1 cut(s)	332
NaeI	GCCGGC	1 cut(s)	324
NdeII	GATC	3 cut(s)	13, 115, 337
NgoMIV	GCCGGC	1 cut(s)	322
NlaIII	CATG	2 cut(s)	46, 73
NmuCI	GTSAC	1 cut(s)	253
NsbI	TGCGCA	1 cut(s)	5
PagI	TCATGA	1 cut(s)	69
PdiI	GCCGGC	1 cut(s)	324
PkrI	GCNGC	1 cut(s)	8
PshBI	ATTAAT	1 cut(s)	162
PsiI	TTATAA	1 cut(s)	300
PspPI	GGNCC	2 cut(s)	46, 124
PstNI	CAGNNNCTG	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	1 cut(s)	7
Sau3AI	GATC	3 cut(s)	13, 115, 337
Sau96I	GGNCC	2 cut(s)	46, 124
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	4 cut(s)	150, 174, 198, 224
SinI	GGWCC	1 cut(s)	46
Sse9I	AATT	2 cut(s)	163, 247
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	22
TaqII	GACCGA	1 cut(s)	72
TasI	AATT	2 cut(s)	163, 247
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	253
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	46
VspI	ATTAAT	1 cut(s)	162
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.