Rorug02G0544700

Eukaryotic initiation factor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
67404787 .. 67405317
531 bp
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UTR
Exon/CDS
Intron
Rorug02G0544700.1

Sequence Viewer

Length: 270 bp
ATGGCTCTTGCTATGTCTAACAGCAAAGTGGCCATGCTTCTTGTGCTCTGTCTTTTCCTCATCATCTCCTCCACTGAAAGCAGACAACTCGGCACTGGGAATGGCAAACCGAGCTGCGACTTTACTTATGCAGTAAAACCTGCTGATACTTGCGCTGATGTGATTGAAGATTTCGCTCTGGATTCGGACTTCTTCTTTTCAATCAATCCTAACATCAACTGCGACGCTCTCTTTGTCGATCAATGGCTATGTGTCAGTGGGTCAGCATAG

Protein Analysis

89

Amino Acids

9.58

Weight (kDa)

4.05

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 148
AcoI YGGCCR 1 cut(s) 30
AgsI TTSAA 2 cut(s) 167, 201
AluBI AGCT 1 cut(s) 114
AluI AGCT 1 cut(s) 114
Alw21I GWGCWC 1 cut(s) 48
AoxI GGCC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 114
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
AspLEI GCGC 1 cut(s) 155
BalI TGGCCA 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BfuAI ACCTGC 1 cut(s) 148
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
BmrI ACTGGG 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 105
Bse1I ACTGG 1 cut(s) 100
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 101
BshFI GGCC 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 48
BsnI GGCC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 1 cut(s) 238
BspANI GGCC 1 cut(s) 32
BspMI ACCTGC 1 cut(s) 148
BsrI ACTGG 1 cut(s) 100
BssMI GATC 1 cut(s) 238
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstMWI GCNNNNNNNGC 2 cut(s) 43, 111
BstV1I GCAGC 1 cut(s) 101
BsuRI GGCC 1 cut(s) 32
BtsIMutI CAGTG 3 cut(s) 72, 93, 262
BveI ACCTGC 1 cut(s) 148
CfoI GCGC 1 cut(s) 155
CseI GACGC 1 cut(s) 233
CviAII CATG 1 cut(s) 34
CviJI RGCY 4 cut(s) 5, 32, 114, 247
CviKI_1 RGCY 4 cut(s) 5, 32, 114, 247
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 30
FaeI CATG 1 cut(s) 37
FaiI YATR 5 cut(s) 14, 35, 129, 250, 268
FatI CATG 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 115
GlaI GCGC 1 cut(s) 154
GluI GCNGC 1 cut(s) 115
HaeIII GGCC 1 cut(s) 32
HgaI GACGC 1 cut(s) 233
HhaI GCGC 1 cut(s) 155
Hin1II CATG 1 cut(s) 37
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HinfI GANTC 1 cut(s) 182
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 179
Hpy99I CGWCG 1 cut(s) 227
HpyCH4V TGCA 1 cut(s) 131
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 111
Hsp92II CATG 1 cut(s) 37
HspAI GCGC 1 cut(s) 153
Kzo9I GATC 1 cut(s) 238
LpnPI CCDG 3 cut(s) 81, 153, 164
Lsp1109I GCAGC 1 cut(s) 101
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 2 cut(s) 179, 184
MhlI GDGCHC 1 cut(s) 48
MlsI TGGCCA 1 cut(s) 32
MluNI TGGCCA 1 cut(s) 32
MnlI CCTC 2 cut(s) 68, 79
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
Msp20I TGGCCA 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 43, 111
NdeII GATC 1 cut(s) 238
NlaIII CATG 1 cut(s) 37
NmeAIII GCCGAG 1 cut(s) 69
PfeI GAWTC 1 cut(s) 182
PkrI GCNGC 1 cut(s) 116
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 1 cut(s) 238
SduI GDGCHC 1 cut(s) 48
SetI ASST 2 cut(s) 116, 142
SgeI CNNG 9 cut(s) 20, 46, 53, 101, 108, 123, 152, 162, 191
TaqI TCGA 1 cut(s) 237
TfiI GAWTC 1 cut(s) 182
TscAI CASTG 3 cut(s) 79, 100, 262
TseI GCWGC 1 cut(s) 114
TspRI CASTG 3 cut(s) 79, 100, 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.