Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000818

Physical Location & Seq

Genomic Coordinates Reverse (-)

1843235 .. 1844673

Gene Structure 1439 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35970

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGATTCAGAGGGGAAGTCTACACACTCGACACATCAAACTACTAATTCTTGATGAATCTGATGAGATGTTGAGCAGAGGCTTCAAGAAGAAAATTTACGAAGTCTACAGACATCTACAAGATACCCTACAAGTTTGCTTGATCTCCGCGACGCTCCCTAATGAAATTTTGGAGATGACCAACAAGTTCATGACCGATCCTATAAGGATCCTGGTTAAACGTGACGAGCTGACTTTGGAGTTTGATACTCTGTGCGATCTCTATGATACCTTTACGATCACACAAGCTGTTATTTTCTGCAACACAAGGCGAAAAGTAGACTGGCTTACTGAAAAGATGCGGACTAGTAACTTTTCTGTGTCTGCAATGCATGGAGTGCTGCTGCTGCTGTGCTTGCCTTACTACTGTGAAGAATCCTTGTTGCTGAAAGCTGTAGCTGAGATGGCAGGACAAAGCATTGATCTGCAGAACAATGGTAATCATAATGAGCGAGCTGATGCTATTATGAAAGAGTTTCAGAAAGGTCTTTCACGAGTCCTCATCACAACTGATGTTTGGGGTCGGGGCATCAATGTTCAGCAGGTTTCGCTGGTTATCAACTACGATCTTCCAAATAATCTAGAGCTATACATACATAGGATTGGTCATTCGGGTCGGTTTGGACGAAAGGGTGCGGCAATAAACTTTGTCAAGAAAGATGATATCAGGATCCTAAGAGACATTGAACAGTACACAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

246

Amino Acids

28.48

Weight (kDa)

6.66

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	6 - 56	2.6e-09	DEAD/DEAH box helicase
Helicase_C	PF00271	161 - 221	5.2e-18	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51380 AT1G51380 AT1G51380 AT1G51380 AT3G19760
fragaria_vesca	FvH4_4g36800 FvH4_4g36800 FvH4_4g36800 FvH4_6g49811 FvH4_6g49900
malus_domestica	MD09G1053900.v1.1 MD09G1189300.v1.1 MD09G1268200.v1.1 MD09G1268600.v1.1 MD09G1268800.v1.1 MD13G1006800.v1.1 MD15G1056500.v1.1 MD16G1001000.v1.1
prunus_persica	Prupe.1G346100_v2.0.a1 Prupe.3G165200_v2.0.a1
pyrus_communis	pycom111g04510 pycom16g00440
rosa_chinensis	RchiOBHm_Chr0c44g0503461 RchiOBHm_Chr0c44g0503501 RchiOBHm_Chr0c44g0503531 RchiOBHm_Chr0c44g0503561 RchiOBHm_Chr0c44g0503691 RchiOBHm_Chr0c44g0503701 RchiOBHm_Chr0c44g0503721 RchiOBHm_Chr0c44g0503751 RchiOBHm_Chr2g0169961 RchiOBHm_Chr4g0386061 RchiOBHm_Chr4g0386101 RchiOBHm_Chr4g0386151 RchiOBHm_Chr4g0386181 RchiOBHm_Chr4g0386221 RchiOBHm_Chr4g0386241 RchiOBHm_Chr4g0386301 RchiOBHm_Chr4g0386341 RchiOBHm_Chr4g0386361 RchiOBHm_Chr4g0446531
rosa_laevigata	RLG00000005651 RLG00000010170 RLG00000010175 RLG00000021914
rosa_multiflora	Rmu_sc0005526.1_g000001 Rmu_sc0005795.1_g000003 Rmu_sc0013078.1_g000019 Rmu_sc0022031.1_g000001 Rmu_ssc0000389.1_g000007
rosa_roxburghii	Rroxscaffold_5G00333840 Rroxscaffold_5G00386950
rosa_rugosa	Rorug02G0544700 Rorug02G0545100 Rorug04G0372300
rosa_samantha	Rh2AG617000 Rh2AG617300 Rh2CG597900 Rh2DG639700 Rh2DG640100 Rh2DG640400 Rh4AG010700 Rh4AG433900 Rh4BG007600 Rh4BG443100 Rh4DG441700
rosa_wichuraiana	Rw2G051090 Rw4G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	571
AccI	GTMKAC	3 cut(s)	19, 105, 318
AccII	CGCG	1 cut(s)	149
AciI	CCGC	3 cut(s)	147, 340, 674
AclWI	GGATC	5 cut(s)	191, 202, 215, 703, 716
AcsI	RAATTY	2 cut(s)	93, 165
AfaI	GTAC	1 cut(s)	731
AgsI	TTSAA	2 cut(s)	85, 725
AhlI	ACTAGT	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	6 cut(s)	229, 287, 431, 437, 494, 625
AluI	AGCT	6 cut(s)	229, 287, 431, 437, 494, 625
Alw26I	GTCTC	1 cut(s)	711
AlwI	GGATC	5 cut(s)	191, 202, 215, 703, 716
ApeKI	GCWGC	3 cut(s)	379, 382, 385
ApoI	RAATTY	2 cut(s)	93, 165
BamHI	GGATCC	2 cut(s)	207, 708
BarI	GAAGNNNNNNTAC	2 cut(s)	80, 112
BauI	CACGAG	1 cut(s)	531
BbvI	GCAGC	3 cut(s)	366, 369, 372
BccI	CCATC	1 cut(s)	436
BciT130I	CCWGG	1 cut(s)	212
BcoDI	GTCTC	1 cut(s)	711
BcuI	ACTAGT	1 cut(s)	344
BfaI	CTAG	2 cut(s)	345, 620
BfmI	CTRYAG	3 cut(s)	106, 432, 464
BfuAI	ACCTGC	1 cut(s)	571
BisI	GCNGC	4 cut(s)	380, 383, 386, 675
BlsI	GCNGC	4 cut(s)	381, 384, 387, 676
Bme1390I	CCNGG	1 cut(s)	212
BmiI	GGNNCC	2 cut(s)	209, 710
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	3 cut(s)	327, 487, 576
Bse1I	ACTGG	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	212
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	1 cut(s)	429
BseNI	ACTGG	1 cut(s)	326
BseXI	GCAGC	3 cut(s)	366, 369, 372
Bsh1236I	CGCG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	711
Bsp143I	GATC	8 cut(s)	141, 196, 207, 256, 276, 460, 604, 708
BspACI	CCGC	3 cut(s)	147, 340, 674
BspCNI	CTCAG	1 cut(s)	430
BspFNI	CGCG	1 cut(s)	149
BspHI	TCATGA	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	209, 710
BspMAI	CTGCAG	1 cut(s)	468
BspMI	ACCTGC	1 cut(s)	571
BspPI	GGATC	5 cut(s)	191, 202, 215, 703, 716
BsrDI	GCAATG	1 cut(s)	372
BsrI	ACTGG	1 cut(s)	326
BssMI	GATC	8 cut(s)	141, 196, 207, 256, 276, 460, 604, 708
BssSI	CACGAG	1 cut(s)	531
Bst2BI	CACGAG	1 cut(s)	531
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	2 cut(s)	407, 729
BstAPI	GCANNNNNTGC	1 cut(s)	376
BstC8I	GCNNGC	2 cut(s)	395, 492
BstDEI	CTNAG	2 cut(s)	438, 713
BstFNI	CGCG	1 cut(s)	149
BstKTI	GATC	8 cut(s)	144, 199, 210, 259, 279, 463, 607, 711
BstMAI	GTCTC	1 cut(s)	711
BstMBI	GATC	8 cut(s)	141, 196, 207, 256, 276, 460, 604, 708
BstMWI	GCNNNNNNNGC	5 cut(s)	376, 385, 394, 443, 586
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	210
BstSFI	CTRYAG	3 cut(s)	106, 432, 464
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	3 cut(s)	366, 369, 372
BstX2I	RGATCY	2 cut(s)	207, 708
BstYI	RGATCY	2 cut(s)	207, 708
BveI	ACCTGC	1 cut(s)	571
Cac8I	GCNNGC	2 cut(s)	395, 492
CciI	TCATGA	1 cut(s)	189
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	730
CviAII	CATG	2 cut(s)	190, 371
CviJI	RGCY	8 cut(s)	81, 229, 287, 325, 431, 437, 494, 625
CviKI_1	RGCY	8 cut(s)	81, 229, 287, 325, 431, 437, 494, 625
CviQI	GTAC	1 cut(s)	730
DdeI	CTNAG	2 cut(s)	438, 713
DpnI	GATC	8 cut(s)	143, 198, 209, 258, 278, 462, 606, 710
DpnII	GATC	8 cut(s)	141, 196, 207, 256, 276, 460, 604, 708
Eco32I	GATATC	1 cut(s)	703
EcoRII	CCWGG	1 cut(s)	210
EcoRV	GATATC	1 cut(s)	703
EcoT22I	ATGCAT	1 cut(s)	372
FaeI	CATG	2 cut(s)	193, 374
FaiI	YATR	9 cut(s)	191, 203, 264, 372, 483, 506, 628, 632, 636
FatI	CATG	2 cut(s)	189, 370
FblI	GTMKAC	3 cut(s)	19, 105, 318
Fnu4HI	GCNGC	4 cut(s)	380, 383, 386, 675
Fsp4HI	GCNGC	4 cut(s)	380, 383, 386, 675
FspBI	CTAG	2 cut(s)	345, 620
GluI	GCNGC	4 cut(s)	380, 383, 386, 675
HgaI	GACGC	1 cut(s)	160
Hin1II	CATG	2 cut(s)	193, 374
HinfI	GANTC	4 cut(s)	4, 56, 413, 534
Hpy166II	GTNNAC	4 cut(s)	20, 106, 319, 732
Hpy188I	TCNGA	3 cut(s)	9, 61, 519
Hpy188III	TCNNGA	7 cut(s)	50, 85, 190, 531, 620, 691, 706
Hpy8I	GTNNAC	4 cut(s)	20, 106, 319, 732
Hpy99I	CGWCG	1 cut(s)	154
HpyCH4III	ACNGT	2 cut(s)	407, 729
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	4 cut(s)	300, 365, 370, 466
HpyF10VI	GCNNNNNNNGC	5 cut(s)	376, 385, 394, 443, 586
HpyF3I	CTNAG	2 cut(s)	438, 713
HpySE526I	ACGT	1 cut(s)	220
Hsp92II	CATG	2 cut(s)	193, 374
Kzo9I	GATC	8 cut(s)	141, 196, 207, 256, 276, 460, 604, 708
LmnI	GCTCC	1 cut(s)	159
LpnPI	CCDG	7 cut(s)	197, 224, 307, 432, 566, 575, 691
Lsp1109I	GCAGC	3 cut(s)	366, 369, 372
LweI	GCATC	3 cut(s)	327, 487, 576
MaeI	CTAG	2 cut(s)	345, 620
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	2 cut(s)	221, 347
MalI	GATC	8 cut(s)	143, 198, 209, 258, 278, 462, 606, 710
MboI	GATC	8 cut(s)	141, 196, 207, 256, 276, 460, 604, 708
MboII	GAAGA	3 cut(s)	100, 422, 599
MflI	RGATCY	2 cut(s)	207, 708
MluCI	AATT	3 cut(s)	45, 93, 165
MlyI	GAGTC	1 cut(s)	543
MnlI	CCTC	3 cut(s)	3, 71, 548
Mph1103I	ATGCAT	1 cut(s)	372
MseI	TTAA	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	5 cut(s)	376, 385, 394, 443, 586
NdeII	GATC	8 cut(s)	141, 196, 207, 256, 276, 460, 604, 708
NlaIII	CATG	2 cut(s)	193, 374
NlaIV	GGNNCC	2 cut(s)	209, 710
NmuCI	GTSAC	1 cut(s)	221
NsiI	ATGCAT	1 cut(s)	372
PagI	TCATGA	1 cut(s)	189
PcsI	WCGNNNNNNNCGW	1 cut(s)	661
PfeI	GAWTC	3 cut(s)	4, 56, 413
PkrI	GCNGC	4 cut(s)	381, 384, 387, 676
PleI	GAGTC	1 cut(s)	542
PpsI	GAGTC	1 cut(s)	542
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	209, 710
PstI	CTGCAG	1 cut(s)	468
PsuI	RGATCY	2 cut(s)	207, 708
RsaI	GTAC	1 cut(s)	731
RsaNI	GTAC	1 cut(s)	730
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	4 cut(s)	380, 383, 386, 675
Sau3AI	GATC	8 cut(s)	141, 196, 207, 256, 276, 460, 604, 708
SchI	GAGTC	1 cut(s)	543
ScrFI	CCNGG	1 cut(s)	212
SfaNI	GCATC	3 cut(s)	327, 487, 576
SfcI	CTRYAG	3 cut(s)	106, 432, 464
SpeI	ACTAGT	1 cut(s)	344
Sse9I	AATT	3 cut(s)	45, 93, 165
SsiI	CCGC	3 cut(s)	147, 340, 674
SspMI	CTAG	2 cut(s)	345, 620
StyD4I	CCNGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	407, 729
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	28
TaqII	GACCGA	1 cut(s)	209
TasI	AATT	3 cut(s)	45, 93, 165
TatI	WGTACW	1 cut(s)	729
TauI	GCSGC	1 cut(s)	677
TfiI	GAWTC	3 cut(s)	4, 56, 413
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	3 cut(s)	379, 382, 385
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	4 cut(s)	69, 177, 178, 521
XapI	RAATTY	2 cut(s)	93, 165
XbaI	TCTAGA	1 cut(s)	619
XmiI	GTMKAC	3 cut(s)	19, 105, 318
XspI	CTAG	2 cut(s)	345, 620
Zsp2I	ATGCAT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.