Prupe.1G346100_v2.0.a1

Eukaryotic initiation factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
32366299 .. 32370081
3783 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G346100.1

Sequence Viewer

Length: 1212 bp
ATGGCAGAGGCACTGACGAGACGCGGGGGAGGGATGACCGGGGACGAGAAGCTCGAGTTCGTGACGTCTGATGGGATAGAGCCGATCATGAGCTTCGATAAGATGGGTTTAAGGGACGATCTGCTCCGAGGCGTCTACAACTACGGCTTTGAGAAGCCCTCCGCCATCCAGCAACGTGCCGTCAGGCCCATCATTGAGGGCCGTGACGTCATTGCTCAGGCCCAGTCCGGTACCGGCAAGACCTCCATGATTGCCCTCACCGTCTGTCAGCTTGTGGATACCTCTTCCCTAGAGGTTCAGGCTTTGATATTGTCTCCAACAAGGGAATTGGCGGCGCAGACGGAGAAGGTGATACTAGCAATTGGTAATTTCATAAATATAAAAGCCCATTCTTGCATTGGAGGCAAAAGCGTAGGCGAGGATATCAGAAAGCTTGAGTACGGTGTTCATGTGGTGTCTGGAACTCCTGGCAGAGTCTGTGATATGATCAAGAGGAGAACTCTTCGCACTCGAGCCATTAAATTATTAATTCTCGATGAATCTGATGAGATGTTGAGTAGAGGCTTCAAGGATCAGATTTACGATGTCTACAGATATCTTCCACCTGAGCTTCAGGTTTGCTTAATTTCTGCTACACTTCCTCATGAAATTTTGGAGATCACCAACAAATTTATGACTGAACCTGTAAGGATCCTTGTCAAACGTGATGAGTTGACTTTGGAGGGAATCAAGCAATTTTTCGTTGCGGTTGAAAGAGAAGAATGGAAGTTTGATACGCTTTGTGATCTTTATGATACTCTTACAATTACACAAGCTGTTATTTTCTGCAACACAAAGCGAAAGGTGGACTGGCTCACTGAAAAGATGCGGAGTAATAACTTTACTGTGTCTGCAATGCATGGAGACATGCCTCAGAAGGAGAGAGATGCTATTATGGCCGAGTTTCGTGGTGGCACTACTCGCGTCCTGATCACAACAGATGTTTGGGCCCGGGGCCTTGATGTTCAGCAGGTTTCCTTGGTTATCAATTATGATCTTCCAAACAACCGTGAACTGTACATTCATCGGATTGGTCGTTCTGGTCGTTTTGGGCGCAAGGGTGTGGCAATAAACTTTGTCAAAAGCGATGATATTAAGATCTTAAGAGACATAGAACAGTATTACAGTACCCAGATTGACGAAATGCCAATGAATGTTGCGGACTTGATATGA

Protein Analysis

404

Amino Acids

45.63

Weight (kDa)

6.08

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 68, 210
Acc36I ACCTGC 1 cut(s) 1000
Acc65I GGTACC 1 cut(s) 230
AccB1I GGYRCC 1 cut(s) 230
AccI GTMKAC 2 cut(s) 135, 588
AccII CGCG 2 cut(s) 24, 963
AciI CCGC 6 cut(s) 24, 162, 332, 746, 868, 1199
AclWI GGATC 3 cut(s) 579, 685, 698
AcoI YGGCCR 1 cut(s) 936
AcsI RAATTY 2 cut(s) 648, 668
AcuI CTGAAG 1 cut(s) 596
AcyI GRCGYC 3 cut(s) 65, 132, 207
AfaI GTAC 4 cut(s) 232, 440, 1058, 1168
AflII CTTAAG 1 cut(s) 1141
AgsI TTSAA 2 cut(s) 568, 752
AjnI CCWGG 1 cut(s) 466
AloI GAACNNNNNNTCC 2 cut(s) 1060, 1092
AluBI AGCT 6 cut(s) 52, 93, 271, 433, 610, 815
AluI AGCT 6 cut(s) 52, 93, 271, 433, 610, 815
Alw26I GTCTC 4 cut(s) 13, 318, 897, 1140
AlwI GGATC 3 cut(s) 579, 685, 698
AlwNI CAGNNNCTG 1 cut(s) 477
Ama87I CYCGRG 3 cut(s) 53, 510, 990
AoxI GGCC 6 cut(s) 185, 199, 219, 936, 987, 994
ApaI GGGCCC 1 cut(s) 991
ApoI RAATTY 2 cut(s) 648, 668
AseI ATTAAT 1 cut(s) 527
Asp718I GGTACC 1 cut(s) 230
AspLEI GCGC 2 cut(s) 337, 1095
AspS9I GGNCC 6 cut(s) 186, 199, 220, 987, 988, 994
AsuC2I CCSGG 3 cut(s) 40, 991, 992
AsuHPI GGTGA 3 cut(s) 250, 361, 652
AvaI CYCGRG 3 cut(s) 53, 510, 990
BaeGI GKGCMC 1 cut(s) 991
BamHI GGATCC 1 cut(s) 690
BanI GGYRCC 1 cut(s) 230
BanII GRGCYC 1 cut(s) 991
BccI CCATC 4 cut(s) 65, 97, 173, 197
BceAI ACGGC 3 cut(s) 160, 164, 186
BciT130I CCWGG 1 cut(s) 468
BciVI GTATCC 1 cut(s) 271
BclI TGATCA 2 cut(s) 486, 969
BcnI CCSGG 3 cut(s) 40, 991, 992
BcoDI GTCTC 4 cut(s) 13, 318, 897, 1140
BfaI CTAG 2 cut(s) 290, 356
BfmI CTRYAG 1 cut(s) 589
BfrI CTTAAG 1 cut(s) 1141
BfuAI ACCTGC 1 cut(s) 1000
BfuI GTATCC 1 cut(s) 271
BglII AGATCT 1 cut(s) 1137
BisI GCNGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 334
Bme1390I CCNGG 4 cut(s) 40, 468, 991, 992
BmeT110I CYCGRG 3 cut(s) 53, 510, 990
BmgT120I GGNCC 6 cut(s) 186, 199, 220, 987, 988, 994
BmiI GGNNCC 4 cut(s) 232, 692, 989, 995
BmrFI CCNGG 4 cut(s) 40, 468, 991, 992
BmrI ACTGGG 1 cut(s) 217
BmsI GCATC 2 cut(s) 855, 916
BmuI ACTGGG 1 cut(s) 217
BplI GAGNNNNNCTC 4 cut(s) 143, 175, 484, 516
Bpu10I CCTNAGC 2 cut(s) 216, 606
BpuEI CTTGAG 1 cut(s) 455
BpuMI CCSGG 3 cut(s) 40, 991, 992
BsaHI GRCGYC 3 cut(s) 65, 132, 207
BsaJI CCNNGG 5 cut(s) 39, 127, 990, 991, 1017
BsaWI WCCGGW 1 cut(s) 227
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 2 cut(s) 223, 854
Bse3DI GCAATG 2 cut(s) 210, 900
BseBI CCWGG 1 cut(s) 468
BseDI CCNNGG 5 cut(s) 39, 127, 990, 991, 1017
BseGI GGATG 2 cut(s) 39, 165
BseMI GCAATG 2 cut(s) 210, 900
BseMII CTCAG 3 cut(s) 230, 597, 926
BseNI ACTGG 2 cut(s) 223, 854
BseRI GAGGAG 1 cut(s) 508
BseSI GKGCMC 1 cut(s) 991
Bsh1236I CGCG 2 cut(s) 24, 963
BshFI GGCC 6 cut(s) 187, 201, 221, 938, 989, 996
BshNI GGYRCC 1 cut(s) 230
BsiHKCI CYCGRG 3 cut(s) 53, 510, 990
BsiSI CCGG 4 cut(s) 39, 228, 234, 991
BslFI GGGAC 2 cut(s) 56, 128
BsmAI GTCTC 4 cut(s) 13, 318, 897, 1140
BsmBI CGTCTC 1 cut(s) 13
BsmFI GGGAC 2 cut(s) 56, 128
BsnI GGCC 6 cut(s) 187, 201, 221, 938, 989, 996
BsoBI CYCGRG 3 cut(s) 53, 510, 990
Bsp120I GGGCCC 1 cut(s) 987
Bsp1286I GDGCHC 1 cut(s) 991
Bsp1407I TGTACA 1 cut(s) 1056
BspACI CCGC 6 cut(s) 24, 162, 332, 746, 868, 1199
BspANI GGCC 6 cut(s) 187, 201, 221, 938, 989, 996
BspCNI CTCAG 3 cut(s) 229, 598, 925
BspFNI CGCG 2 cut(s) 24, 963
BspHI TCATGA 2 cut(s) 87, 643
BspLI GGNNCC 4 cut(s) 232, 692, 989, 995
BspMI ACCTGC 1 cut(s) 1000
BspPI GGATC 3 cut(s) 579, 685, 698
BspT107I GGYRCC 1 cut(s) 230
BspTI CTTAAG 1 cut(s) 1141
BsrDI GCAATG 2 cut(s) 210, 900
BsrFI RCCGGY 1 cut(s) 233
BsrGI TGTACA 1 cut(s) 1056
BsrI ACTGG 2 cut(s) 223, 854
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 5 cut(s) 39, 127, 990, 991, 1017
BssNI GRCGYC 3 cut(s) 65, 132, 207
BssT1I CCWWGG 1 cut(s) 1017
Bst2UI CCWGG 1 cut(s) 468
Bst4CI ACNGT 7 cut(s) 262, 443, 886, 1049, 1056, 1158, 1166
Bst6I CTCTTC 2 cut(s) 289, 507
BstACI GRCGYC 3 cut(s) 65, 132, 207
BstAFI CTTAAG 1 cut(s) 1141
BstAUI TGTACA 1 cut(s) 1056
BstDEI CTNAG 3 cut(s) 216, 606, 912
BstF5I GGATG 2 cut(s) 39, 165
BstFNI CGCG 2 cut(s) 24, 963
BstHHI GCGC 2 cut(s) 337, 1095
BstMAI GTCTC 4 cut(s) 13, 318, 897, 1140
BstMWI GCNNNNNNNGC 3 cut(s) 402, 935, 960
BstNI CCWGG 1 cut(s) 468
BstNSI RCATGY 1 cut(s) 910
BstSCI CCNGG 4 cut(s) 38, 466, 989, 990
BstSFI CTRYAG 1 cut(s) 589
BstSLI GKGCMC 1 cut(s) 991
BstUI CGCG 2 cut(s) 24, 963
BstX2I RGATCY 2 cut(s) 690, 1137
BstYI RGATCY 2 cut(s) 690, 1137
BsuI GTATCC 1 cut(s) 271
BsuRI GGCC 6 cut(s) 187, 201, 221, 938, 989, 996
BtgZI GCGATG 1 cut(s) 1140
BtsCI GGATG 2 cut(s) 39, 165
BtsIMutI CAGTG 2 cut(s) 11, 855
BveI ACCTGC 1 cut(s) 1000
CaiI CAGNNNCTG 1 cut(s) 477
CciI TCATGA 2 cut(s) 87, 643
CfoI GCGC 2 cut(s) 337, 1095
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 6 cut(s) 186, 199, 220, 987, 988, 994
Cfr9I CCCGGG 1 cut(s) 990
CseI GACGC 3 cut(s) 30, 121, 952
Csp6I GTAC 4 cut(s) 231, 439, 1057, 1167
CviAII CATG 6 cut(s) 88, 247, 449, 644, 899, 907
CviQI GTAC 4 cut(s) 231, 439, 1057, 1167
DdeI CTNAG 3 cut(s) 216, 606, 912
EaeI YGGCCR 1 cut(s) 936
Eam1104I CTCTTC 2 cut(s) 289, 507
EarI CTCTTC 2 cut(s) 289, 507
EciI GGCGGA 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 1017
Eco24I GRGCYC 1 cut(s) 991
Eco32I GATATC 2 cut(s) 424, 596
Eco57I CTGAAG 1 cut(s) 596
Eco88I CYCGRG 3 cut(s) 53, 510, 990
EcoO109I RGGNCCY 1 cut(s) 994
EcoRII CCWGG 1 cut(s) 466
EcoRV GATATC 2 cut(s) 424, 596
EcoT14I CCWWGG 1 cut(s) 1017
EcoT22I ATGCAT 1 cut(s) 900
EcoT38I GRGCYC 1 cut(s) 991
ErhI CCWWGG 1 cut(s) 1017
Esp3I CGTCTC 1 cut(s) 13
FaeI CATG 6 cut(s) 91, 250, 452, 647, 902, 910
FaqI GGGAC 2 cut(s) 56, 128
FatI CATG 6 cut(s) 87, 246, 448, 643, 898, 906
FauI CCCGC 1 cut(s) 17
FbaI TGATCA 2 cut(s) 486, 969
FblI GTMKAC 2 cut(s) 135, 588
Fnu4HI GCNGC 1 cut(s) 333
FokI GGATG 2 cut(s) 46, 152
FriOI GRGCYC 1 cut(s) 991
Fsp4HI GCNGC 1 cut(s) 333
FspBI CTAG 2 cut(s) 290, 356
GlaI GCGC 2 cut(s) 336, 1094
GluI GCNGC 1 cut(s) 333
HaeIII GGCC 6 cut(s) 187, 201, 221, 938, 989, 996
HapII CCGG 4 cut(s) 39, 228, 234, 991
HgaI GACGC 3 cut(s) 30, 121, 952
HhaI GCGC 2 cut(s) 337, 1095
Hin1I GRCGYC 3 cut(s) 65, 132, 207
Hin1II CATG 6 cut(s) 91, 250, 452, 647, 902, 910
Hin6I GCGC 2 cut(s) 335, 1093
HinP1I GCGC 2 cut(s) 335, 1093
HincII GTYRAC 1 cut(s) 714
HindII GTYRAC 1 cut(s) 714
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 3 cut(s) 474, 539, 726
HpaII CCGG 4 cut(s) 39, 228, 234, 991
HphI GGTGA 3 cut(s) 250, 361, 652
Hpy166II GTNNAC 5 cut(s) 136, 589, 714, 847, 1052
Hpy188I TCNGA 7 cut(s) 70, 128, 428, 544, 576, 915, 1068
Hpy188III TCNNGA 7 cut(s) 61, 88, 459, 490, 533, 644, 967
Hpy8I GTNNAC 5 cut(s) 136, 589, 714, 847, 1052
HpyAV CCTTC 2 cut(s) 340, 910
HpyCH4III ACNGT 7 cut(s) 262, 443, 886, 1049, 1056, 1158, 1166
HpyCH4IV ACGT 4 cut(s) 65, 175, 207, 703
HpyCH4V TGCA 4 cut(s) 396, 828, 893, 898
HpyF10VI GCNNNNNNNGC 3 cut(s) 402, 935, 960
HpyF3I CTNAG 3 cut(s) 216, 606, 912
HpySE526I ACGT 4 cut(s) 65, 175, 207, 703
Hsp92I GRCGYC 3 cut(s) 65, 132, 207
Hsp92II CATG 6 cut(s) 91, 250, 452, 647, 902, 910
HspAI GCGC 2 cut(s) 335, 1093
KpnI GGTACC 1 cut(s) 234
Ksp22I TGATCA 2 cut(s) 486, 969
LmnI GCTCC 1 cut(s) 129
LweI GCATC 2 cut(s) 855, 916
MaeI CTAG 2 cut(s) 290, 356
MaeII ACGT 4 cut(s) 65, 175, 207, 703
MaeIII GTNAC 2 cut(s) 61, 203
MboII GAAGA 5 cut(s) 276, 494, 590, 770, 1028
MfeI CAATTG 1 cut(s) 360
MflI RGATCY 2 cut(s) 690, 1137
MhlI GDGCHC 1 cut(s) 991
MlyI GAGTC 1 cut(s) 483
MmeI TCCRAC 1 cut(s) 341
Mph1103I ATGCAT 1 cut(s) 900
MseI TTAA 6 cut(s) 110, 519, 527, 623, 1134, 1142
MspCI CTTAAG 1 cut(s) 1141
MspI CCGG 4 cut(s) 39, 228, 234, 991
MspR9I CCNGG 4 cut(s) 40, 468, 991, 992
MunI CAATTG 1 cut(s) 360
MvaI CCWGG 1 cut(s) 468
MvnI CGCG 2 cut(s) 24, 963
MwoI GCNNNNNNNGC 3 cut(s) 402, 935, 960
NciI CCSGG 3 cut(s) 40, 991, 992
NlaIII CATG 6 cut(s) 91, 250, 452, 647, 902, 910
NlaIV GGNNCC 4 cut(s) 232, 692, 989, 995
NmeAIII GCCGAG 1 cut(s) 964
NmuCI GTSAC 2 cut(s) 61, 203
NsiI ATGCAT 1 cut(s) 900
NspI RCATGY 1 cut(s) 910
PaeR7I CTCGAG 2 cut(s) 53, 510
PagI TCATGA 2 cut(s) 87, 643
PcsI WCGNNNNNNNCGW 3 cut(s) 51, 1072, 1081
PfeI GAWTC 2 cut(s) 539, 726
PkrI GCNGC 1 cut(s) 334
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
PshBI ATTAAT 1 cut(s) 527
Psp6I CCWGG 1 cut(s) 466
PspGI CCWGG 1 cut(s) 466
PspN4I GGNNCC 4 cut(s) 232, 692, 989, 995
PspOMI GGGCCC 1 cut(s) 987
PspPI GGNCC 6 cut(s) 186, 199, 220, 987, 988, 994
PspXI VCTCGAGB 2 cut(s) 53, 510
PstNI CAGNNNCTG 1 cut(s) 477
PsuI RGATCY 2 cut(s) 690, 1137
RsaI GTAC 4 cut(s) 232, 440, 1058, 1168
RsaNI GTAC 4 cut(s) 231, 439, 1057, 1167
SaqAI TTAA 6 cut(s) 110, 519, 527, 623, 1134, 1142
SatI GCNGC 1 cut(s) 333
Sau96I GGNCC 6 cut(s) 186, 199, 220, 987, 988, 994
SchI GAGTC 1 cut(s) 483
ScrFI CCNGG 4 cut(s) 40, 468, 991, 992
SduI GDGCHC 1 cut(s) 991
SfaNI GCATC 2 cut(s) 855, 916
SfcI CTRYAG 1 cut(s) 589
Sfr274I CTCGAG 2 cut(s) 53, 510
SlaI CTCGAG 2 cut(s) 53, 510
SmaI CCCGGG 1 cut(s) 992
SmlI CTYRAG 4 cut(s) 53, 434, 510, 1141
SmoI CTYRAG 4 cut(s) 53, 434, 510, 1141
SsiI CCGC 6 cut(s) 24, 162, 332, 746, 868, 1199
SspMI CTAG 2 cut(s) 290, 356
StyD4I CCNGG 4 cut(s) 38, 466, 989, 990
StyI CCWWGG 1 cut(s) 1017
TaaI ACNGT 7 cut(s) 262, 443, 886, 1049, 1056, 1158, 1166
TaiI ACGT 4 cut(s) 68, 178, 210, 706
TaqI TCGA 4 cut(s) 54, 96, 511, 534
TatI WGTACW 1 cut(s) 1056
TauI GCSGC 1 cut(s) 335
TfiI GAWTC 2 cut(s) 539, 726
Tru1I TTAA 6 cut(s) 110, 519, 527, 623, 1134, 1142
Tru9I TTAA 6 cut(s) 110, 519, 527, 623, 1134, 1142
TscAI CASTG 2 cut(s) 18, 862
TseFI GTSAC 2 cut(s) 61, 203
Tsp45I GTSAC 2 cut(s) 61, 203
TspDTI ATGAA 6 cut(s) 361, 437, 552, 660, 1052, 1205
TspGWI ACGGA 1 cut(s) 356
TspMI CCCGGG 1 cut(s) 990
TspRI CASTG 2 cut(s) 18, 862
Vha464I CTTAAG 1 cut(s) 1141
VspI ATTAAT 1 cut(s) 527
XapI RAATTY 2 cut(s) 648, 668
XceI RCATGY 1 cut(s) 910
XcmI CCANNNNNNNNNTGG 1 cut(s) 395
XhoI CTCGAG 2 cut(s) 53, 510
XmaI CCCGGG 1 cut(s) 990
XmiI GTMKAC 2 cut(s) 135, 588
XspI CTAG 2 cut(s) 290, 356
ZraI GACGTC 2 cut(s) 66, 208
Zsp2I ATGCAT 1 cut(s) 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.