AT3G19760

RNA helicase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
6863661 .. 6866646
2986 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19760.1

Sequence Viewer

Length: 1227 bp
ATGGCGACAGCGAATCCTGGCCGTGGAGGTGGTAGAAGAGGCGGTGGAGCTATGGATGACGATAAGTTGGTCTTCGAGACTACCGATGGAATTGAGCCCATCACGAGCTTCAATGATATGGGCATTAAGGAAGATGTGCTTCGCGGTGTCTACGAATATGGATTCGAGAAGCCTTCCGCGATTCAGCAGAGGGCTGTTATGCCGATTCTTCAAGGACGTGATGTTATTGCTCAAGCTCAGTCCGGTACCGGGAAGACATCTATGATTGCTCTCTCCGTTTGTCAAGTCGTTGATACTTCTTCTAGAGAGGTTCAGGCCTTGATATTATCCCCAACAAGAGAGCTGGCTACACAAACAGAGAAGACGATACAAGCTATTGGATTACATGCCAATATTCAGGCACATGCTTGCATCGGTGGGAATAGTGTTGGAGAAGACATCAGGAAGCTGGAGCATGGTGTTCATGTTGTGTCTGGGACACCTGGTCGTGTCTGTGACATGATAAAGAGGAGAAGTCTTCGTACCAGAGCTATTAAACTTCTGATTCTTGATGAATCAGATGAAATGCTGAGCAGAGGGTTCAAGGACCAGATCTATGATGTTTACAGATATCTTCCACCAGATCTTCAGGTTTGCTTGGTTTCTGCAACTCTTCCTCACGAGATTTTGGAGATGACATCCAAGTTTATGACAGAACCAGTGAAGATACTTGTGAAGCGTGATGAGTTGACTCTTGAAGGAATCAAACAATTTTTTGTTGCTGTTGAGAAGGAAGAGTGGAAATTTGATACACTCTGTGATCTTTATGACACGCTTACTATCACTCAAGCTGTTATCTTCTGCAATACTAAACGAAAGGTGGATTATCTTAGTGAGAAAATGAGAAGTCACAACTTCACTGTCTCATCAATGCATGGAGACATGCCTCAGAAGGAGAGAGACGCCATCATGAATGAGTTTCGGTCAGGTGATAGTCGTGTTTTGATAACAACAGATGTATGGGCACGTGGGATTGATGTGCAACAAGTTTCTCTTGTTATCAATTATGATCTCCCCAACAACCGTGAGCTCTACATCCATCGTATTGGGCGGTCTGGTCGATTCGGGCGTAAGGGTGTTGCAATCAACTTTGTTAAAAGCGACGACATCAAGATTCTCAGAGACATTGAGCAGTACTACAGTACCCAGATTGATGAGATGCCAATGAATGTAGCTGATCTTATCTAA

Protein Analysis

408

Amino Acids

45.84

Weight (kDa)

5.85

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 60 - 222 6.1e-43 DEAD/DEAH box helicase
Helicase_C PF00271 261 - 369 1.1e-35 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 245
AccI GTMKAC 1 cut(s) 150
AccII CGCG 2 cut(s) 144, 179
AciI CCGC 4 cut(s) 42, 144, 177, 1090
AcoI YGGCCR 1 cut(s) 19
AcsI RAATTY 1 cut(s) 782
AcuI CTGAAG 1 cut(s) 611
AcvI CACGTG 1 cut(s) 1007
AcyI GRCGYC 1 cut(s) 942
AdeI CACNNNGTG 1 cut(s) 797
AfaI GTAC 4 cut(s) 247, 523, 1175, 1183
AfiI CCNNNNNNNGG 2 cut(s) 23, 249
AgsI TTSAA 4 cut(s) 112, 212, 583, 737
AhdI GACNNNNNGTC 1 cut(s) 483
AjiI CACGTC 1 cut(s) 218
AjnI CCWGG 2 cut(s) 16, 481
Alw21I GWGCWC 1 cut(s) 1071
Alw26I GTCTC 5 cut(s) 71, 907, 912, 933, 1155
AoxI GGCC 2 cut(s) 19, 315
ApoI RAATTY 1 cut(s) 782
Asp718I GGTACC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 586
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 1 cut(s) 980
AvaII GGWCC 1 cut(s) 586
BaeGI GKGCMC 1 cut(s) 1006
BaeI ACNNNNGTAYC 2 cut(s) 1165, 1198
BanI GGYRCC 1 cut(s) 245
BanII GRGCYC 2 cut(s) 99, 1071
BarI GAAGNNNNNNTAC 2 cut(s) 505, 537
BauI CACGAG 2 cut(s) 103, 659
BbrPI CACGTG 1 cut(s) 1007
BbsI GAAGAC 5 cut(s) 64, 260, 368, 441, 509
Bbv12I GWGCWC 1 cut(s) 1071
BccI CCATC 4 cut(s) 80, 107, 953, 1086
BceAI ACGGC 1 cut(s) 6
BciT130I CCWGG 2 cut(s) 18, 483
BcnI CCSGG 1 cut(s) 250
BcoDI GTCTC 5 cut(s) 71, 907, 912, 933, 1155
BfaI CTAG 1 cut(s) 303
BfmI CTRYAG 1 cut(s) 1177
BglII AGATCT 2 cut(s) 591, 622
BlpI GCTNAGC 1 cut(s) 569
BmcAI AGTACT 1 cut(s) 1175
Bme1390I CCNGG 3 cut(s) 18, 250, 483
Bme18I GGWCC 1 cut(s) 586
BmeRI GACNNNNNGTC 1 cut(s) 483
BmgBI CACGTC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 586
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 3 cut(s) 18, 250, 483
BmsI GCATC 2 cut(s) 420, 1188
BpiI GAAGAC 5 cut(s) 64, 260, 368, 441, 509
BpmI CTGGAG 1 cut(s) 470
Bpu1102I GCTNAGC 1 cut(s) 569
BpuEI CTTGAG 2 cut(s) 216, 810
BpuMI CCSGG 1 cut(s) 250
BsaAI YACGTR 1 cut(s) 1007
BsaHI GRCGYC 1 cut(s) 942
BsaJI CCNNGG 1 cut(s) 22
BsaWI WCCGGW 1 cut(s) 242
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 249
Bse1I ACTGG 1 cut(s) 698
BseBI CCWGG 2 cut(s) 18, 483
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 3 cut(s) 61, 677, 1074
BseLI CCNNNNNNNGG 2 cut(s) 23, 249
BseMII CTCAG 4 cut(s) 251, 560, 941, 1171
BseNI ACTGG 1 cut(s) 698
BseRI GAGGAG 1 cut(s) 523
BseSI GKGCMC 1 cut(s) 1006
Bsh1236I CGCG 2 cut(s) 144, 179
BshFI GGCC 2 cut(s) 21, 317
BshNI GGYRCC 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 1071
BsiSI CCGG 2 cut(s) 243, 249
BslFI GGGAC 1 cut(s) 490
BslI CCNNNNNNNGG 2 cut(s) 23, 249
BsmAI GTCTC 5 cut(s) 71, 907, 912, 933, 1155
BsmBI CGTCTC 1 cut(s) 933
BsmFI GGGAC 1 cut(s) 490
BsnI GGCC 2 cut(s) 21, 317
Bsp1286I GDGCHC 3 cut(s) 99, 1006, 1071
Bsp143I GATC 5 cut(s) 591, 622, 799, 1048, 1216
Bsp1720I GCTNAGC 1 cut(s) 569
BspACI CCGC 4 cut(s) 42, 144, 177, 1090
BspANI GGCC 2 cut(s) 21, 317
BspCNI CTCAG 4 cut(s) 250, 561, 940, 1170
BspFNI CGCG 2 cut(s) 144, 179
BspHI TCATGA 1 cut(s) 948
BspLI GGNNCC 1 cut(s) 247
BspT107I GGYRCC 1 cut(s) 245
BsrI ACTGG 1 cut(s) 698
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 5 cut(s) 591, 622, 799, 1048, 1216
BssNI GRCGYC 1 cut(s) 942
BssSI CACGAG 2 cut(s) 103, 659
Bst2BI CACGAG 2 cut(s) 103, 659
Bst2UI CCWGG 2 cut(s) 18, 483
Bst4CI ACNGT 3 cut(s) 901, 1064, 1181
Bst6I CTCTTC 3 cut(s) 31, 657, 768
BstACI GRCGYC 1 cut(s) 942
BstBAI YACGTR 1 cut(s) 1007
BstC8I GCNNGC 2 cut(s) 345, 409
BstDEI CTNAG 5 cut(s) 237, 569, 869, 927, 1157
BstDSI CCRYGG 1 cut(s) 22
BstF5I GGATG 3 cut(s) 61, 677, 1074
BstFNI CGCG 2 cut(s) 144, 179
BstKTI GATC 5 cut(s) 594, 625, 802, 1051, 1219
BstMAI GTCTC 5 cut(s) 71, 907, 912, 933, 1155
BstMBI GATC 5 cut(s) 591, 622, 799, 1048, 1216
BstNI CCWGG 2 cut(s) 18, 483
BstNSI RCATGY 3 cut(s) 389, 407, 925
BstSCI CCNGG 3 cut(s) 16, 248, 481
BstSFI CTRYAG 1 cut(s) 1177
BstSLI GKGCMC 1 cut(s) 1006
BstUI CGCG 2 cut(s) 144, 179
BstV2I GAAGAC 5 cut(s) 64, 260, 368, 441, 509
BstX2I RGATCY 2 cut(s) 591, 622
BstXI CCANNNNNNTGG 1 cut(s) 1085
BstYI RGATCY 2 cut(s) 591, 622
BsuRI GGCC 2 cut(s) 21, 317
BtgI CCRYGG 1 cut(s) 22
BtrI CACGTC 1 cut(s) 218
BtsCI GGATG 3 cut(s) 61, 677, 1074
BtsIMutI CAGTG 2 cut(s) 705, 897
Cac8I GCNNGC 2 cut(s) 345, 409
CciI TCATGA 1 cut(s) 948
Cfr13I GGNCC 1 cut(s) 586
CseI GACGC 1 cut(s) 950
CsiI ACCWGGT 1 cut(s) 481
Csp6I GTAC 4 cut(s) 246, 522, 1174, 1182
CviAII CATG 8 cut(s) 386, 404, 455, 464, 499, 914, 922, 949
CviQI GTAC 4 cut(s) 246, 522, 1174, 1182
DdeI CTNAG 5 cut(s) 237, 569, 869, 927, 1157
DpnI GATC 5 cut(s) 593, 624, 801, 1050, 1218
DpnII GATC 5 cut(s) 591, 622, 799, 1048, 1216
DraIII CACNNNGTG 1 cut(s) 797
DriI GACNNNNNGTC 1 cut(s) 483
EaeI YGGCCR 1 cut(s) 19
Eam1104I CTCTTC 3 cut(s) 31, 657, 768
Eam1105I GACNNNNNGTC 1 cut(s) 483
EarI CTCTTC 3 cut(s) 31, 657, 768
Ecl136II GAGCTC 1 cut(s) 1069
Eco147I AGGCCT 1 cut(s) 317
Eco24I GRGCYC 2 cut(s) 99, 1071
Eco32I GATATC 1 cut(s) 611
Eco47I GGWCC 1 cut(s) 586
Eco53kI GAGCTC 1 cut(s) 1069
Eco57I CTGAAG 1 cut(s) 611
Eco72I CACGTG 1 cut(s) 1007
EcoICRI GAGCTC 1 cut(s) 1069
EcoRII CCWGG 2 cut(s) 16, 481
EcoRV GATATC 1 cut(s) 611
EcoT22I ATGCAT 1 cut(s) 915
EcoT38I GRGCYC 2 cut(s) 99, 1071
Esp3I CGTCTC 1 cut(s) 933
FaeI CATG 8 cut(s) 389, 407, 458, 467, 502, 917, 925, 952
FalI AAGNNNNNCTT 6 cut(s) 56, 88, 123, 155, 1017, 1049
FaqI GGGAC 1 cut(s) 490
FatI CATG 8 cut(s) 385, 403, 454, 463, 498, 913, 921, 948
FblI GTMKAC 1 cut(s) 150
FokI GGATG 3 cut(s) 68, 664, 1061
FriOI GRGCYC 2 cut(s) 99, 1071
FspBI CTAG 1 cut(s) 303
GsuI CTGGAG 1 cut(s) 470
HaeIII GGCC 2 cut(s) 21, 317
HapII CCGG 2 cut(s) 243, 249
HgaI GACGC 1 cut(s) 950
Hin1I GRCGYC 1 cut(s) 942
Hin1II CATG 8 cut(s) 389, 407, 458, 467, 502, 917, 925, 952
HincII GTYRAC 1 cut(s) 729
HindII GTYRAC 1 cut(s) 729
HpaII CCGG 2 cut(s) 243, 249
HphI GGTGA 1 cut(s) 980
Hpy166II GTNNAC 3 cut(s) 151, 604, 729
Hpy188I TCNGA 4 cut(s) 543, 559, 930, 1160
Hpy8I GTNNAC 3 cut(s) 151, 604, 729
Hpy99I CGWCG 1 cut(s) 1145
HpyAV CCTTC 4 cut(s) 183, 731, 763, 925
HpyCH4III ACNGT 3 cut(s) 901, 1064, 1181
HpyCH4IV ACGT 2 cut(s) 217, 1006
HpyCH4V TGCA 6 cut(s) 411, 647, 843, 913, 1021, 1121
HpyF3I CTNAG 5 cut(s) 237, 569, 869, 927, 1157
HpySE526I ACGT 2 cut(s) 217, 1006
Hsp92I GRCGYC 1 cut(s) 942
Hsp92II CATG 8 cut(s) 389, 407, 458, 467, 502, 917, 925, 952
KpnI GGTACC 1 cut(s) 249
Kzo9I GATC 5 cut(s) 591, 622, 799, 1048, 1216
LmnI GCTCC 2 cut(s) 47, 451
LweI GCATC 2 cut(s) 420, 1188
MabI ACCWGGT 1 cut(s) 481
MaeI CTAG 1 cut(s) 303
MaeII ACGT 2 cut(s) 217, 1006
MaeIII GTNAC 2 cut(s) 494, 887
MalI GATC 5 cut(s) 593, 624, 801, 1050, 1218
MboI GATC 5 cut(s) 591, 622, 799, 1048, 1216
MflI RGATCY 2 cut(s) 591, 622
MhlI GDGCHC 3 cut(s) 99, 1006, 1071
MluCI AATT 4 cut(s) 90, 749, 782, 1042
MlyI GAGTC 1 cut(s) 724
MmeI TCCRAC 1 cut(s) 409
MnlI CCTC 8 cut(s) 20, 32, 183, 301, 501, 569, 666, 936
Mph1103I ATGCAT 1 cut(s) 915
MseI TTAA 3 cut(s) 126, 534, 1134
MspI CCGG 2 cut(s) 243, 249
MspR9I CCNGG 3 cut(s) 18, 250, 483
MvaI CCWGG 2 cut(s) 18, 483
MvnI CGCG 2 cut(s) 144, 179
NciI CCSGG 1 cut(s) 250
NdeII GATC 5 cut(s) 591, 622, 799, 1048, 1216
NlaIII CATG 8 cut(s) 389, 407, 458, 467, 502, 917, 925, 952
NlaIV GGNNCC 1 cut(s) 247
NmuCI GTSAC 2 cut(s) 494, 887
NsiI ATGCAT 1 cut(s) 915
NspI RCATGY 3 cut(s) 389, 407, 925
PagI TCATGA 1 cut(s) 948
PceI AGGCCT 1 cut(s) 317
PcsI WCGNNNNNNNCGW 2 cut(s) 81, 1105
PfeI GAWTC 9 cut(s) 13, 162, 181, 205, 544, 554, 741, 1101, 1153
PleI GAGTC 1 cut(s) 724
PmaCI CACGTG 1 cut(s) 1007
PmlI CACGTG 1 cut(s) 1007
PpsI GAGTC 1 cut(s) 724
Ppu21I YACGTR 1 cut(s) 1007
Psp124BI GAGCTC 1 cut(s) 1071
Psp6I CCWGG 2 cut(s) 16, 481
PspCI CACGTG 1 cut(s) 1007
PspGI CCWGG 2 cut(s) 16, 481
PspN4I GGNNCC 1 cut(s) 247
PspPI GGNCC 1 cut(s) 586
PsuI RGATCY 2 cut(s) 591, 622
RsaI GTAC 4 cut(s) 247, 523, 1175, 1183
RsaNI GTAC 4 cut(s) 246, 522, 1174, 1182
SacI GAGCTC 1 cut(s) 1071
SaqAI TTAA 3 cut(s) 126, 534, 1134
Sau3AI GATC 5 cut(s) 591, 622, 799, 1048, 1216
Sau96I GGNCC 1 cut(s) 586
ScaI AGTACT 1 cut(s) 1175
SchI GAGTC 1 cut(s) 724
ScrFI CCNGG 3 cut(s) 18, 250, 483
SduI GDGCHC 3 cut(s) 99, 1006, 1071
SexAI ACCWGGT 1 cut(s) 481
SfaNI GCATC 2 cut(s) 420, 1188
SfcI CTRYAG 1 cut(s) 1177
SinI GGWCC 1 cut(s) 586
SmlI CTYRAG 2 cut(s) 231, 825
SmoI CTYRAG 2 cut(s) 231, 825
Sse9I AATT 4 cut(s) 90, 749, 782, 1042
SseBI AGGCCT 1 cut(s) 317
SsiI CCGC 4 cut(s) 42, 144, 177, 1090
SspI AATATT 1 cut(s) 394
SspMI CTAG 1 cut(s) 303
SstI GAGCTC 1 cut(s) 1071
StuI AGGCCT 1 cut(s) 317
StyD4I CCNGG 3 cut(s) 16, 248, 481
TaaI ACNGT 3 cut(s) 901, 1064, 1181
TaiI ACGT 2 cut(s) 220, 1009
TaqI TCGA 3 cut(s) 75, 165, 1099
TaqII GACCGA 1 cut(s) 951
TasI AATT 4 cut(s) 90, 749, 782, 1042
TatI WGTACW 1 cut(s) 1173
TfiI GAWTC 9 cut(s) 13, 162, 181, 205, 544, 554, 741, 1101, 1153
Tru1I TTAA 3 cut(s) 126, 534, 1134
Tru9I TTAA 3 cut(s) 126, 534, 1134
TscAI CASTG 2 cut(s) 705, 904
TseFI GTSAC 2 cut(s) 494, 887
Tsp45I GTSAC 2 cut(s) 494, 887
TspDTI ATGAA 5 cut(s) 452, 567, 576, 965, 1220
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 2 cut(s) 705, 904
VpaK11BI GGWCC 1 cut(s) 586
XapI RAATTY 1 cut(s) 782
XbaI TCTAGA 1 cut(s) 302
XceI RCATGY 3 cut(s) 389, 407, 925
XmiI GTMKAC 1 cut(s) 150
XspI CTAG 1 cut(s) 303
ZrmI AGTACT 1 cut(s) 1175
Zsp2I ATGCAT 1 cut(s) 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.