Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000818

Physical Location & Seq

Genomic Coordinates Forward (+)

1747885 .. 1748505

Gene Structure 621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35960

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGACCAACAAGTTCATGACCGATCCTATAAGGATCCTGGTTAAATGTGACGAGCTGACTTTGGAGTTTGATACTCTGTGCGATCTCTATGATACCCTTACGATCACACAAGCTGTTATTTTCTGCAACATAAGGCGAAAAGTGGACTGGCTTACTGAAAAGATGCGGACTAGTAACTTTTCTGTGTCTGCAACGCATGGAGACATGCCTAAGAAGGAGCGAGCTGATGCTATTATGAAAGAGTTTCAGAAAGGTCTTTCACGAGTCCTCATCACAACTGATGTTTGGGCTCTGGGCATCAATGTTCAGCAGGTTTCGCTGGTTATCAACTATGATCTTCCAAATAATCGAGAGCTATACATACATAGGATTGGTCGTTCGGGTCGGTTTGGACGAAAGGGTGCGGCAATAAACTTTGTCAAGAAAGATGATATCAAGATCCTAAGAGACATTGAACAGTATACAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

156

Amino Acids

18.09

Weight (kDa)

8.77

Isoelectric Point (pI)

31.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	23 - 131	5.8e-30	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51380 AT1G51380 AT1G51380 AT1G51380 AT3G19760
fragaria_vesca	FvH4_4g36800 FvH4_4g36800 FvH4_4g36800 FvH4_6g49811 FvH4_6g49900
malus_domestica	MD09G1053900.v1.1 MD09G1189300.v1.1 MD09G1268200.v1.1 MD09G1268600.v1.1 MD09G1268800.v1.1 MD13G1006800.v1.1 MD15G1056500.v1.1 MD16G1001000.v1.1
prunus_persica	Prupe.1G346100_v2.0.a1 Prupe.3G165200_v2.0.a1
pyrus_communis	pycom111g04510 pycom16g00440
rosa_chinensis	RchiOBHm_Chr0c44g0503461 RchiOBHm_Chr0c44g0503501 RchiOBHm_Chr0c44g0503531 RchiOBHm_Chr0c44g0503561 RchiOBHm_Chr0c44g0503691 RchiOBHm_Chr0c44g0503701 RchiOBHm_Chr0c44g0503721 RchiOBHm_Chr0c44g0503751 RchiOBHm_Chr2g0169961 RchiOBHm_Chr4g0386061 RchiOBHm_Chr4g0386101 RchiOBHm_Chr4g0386151 RchiOBHm_Chr4g0386181 RchiOBHm_Chr4g0386221 RchiOBHm_Chr4g0386241 RchiOBHm_Chr4g0386301 RchiOBHm_Chr4g0386341 RchiOBHm_Chr4g0386361 RchiOBHm_Chr4g0446531
rosa_laevigata	RLG00000005651 RLG00000010170 RLG00000010175 RLG00000021914
rosa_multiflora	Rmu_sc0005526.1_g000001 Rmu_sc0005795.1_g000003 Rmu_sc0013078.1_g000019 Rmu_sc0022031.1_g000001 Rmu_ssc0000389.1_g000007
rosa_roxburghii	Rroxscaffold_5G00333840 Rroxscaffold_5G00386950
rosa_rugosa	Rorug02G0544700 Rorug02G0545100 Rorug04G0372300
rosa_samantha	Rh2AG617000 Rh2AG617300 Rh2CG597900 Rh2DG639700 Rh2DG640100 Rh2DG640400 Rh4AG010700 Rh4AG433900 Rh4BG007600 Rh4BG443100 Rh4DG441700
rosa_wichuraiana	Rw2G051090 Rw4G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	301
AccI	GTMKAC	1 cut(s)	461
AciI	CCGC	2 cut(s)	166, 404
AclWI	GGATC	4 cut(s)	17, 28, 41, 433
AgsI	TTSAA	1 cut(s)	455
AhlI	ACTAGT	1 cut(s)	170
AjnI	CCWGG	1 cut(s)	36
AloI	GAACNNNNNNTCC	2 cut(s)	361, 393
AluBI	AGCT	4 cut(s)	55, 113, 224, 355
AluI	AGCT	4 cut(s)	55, 113, 224, 355
Alw26I	GTCTC	2 cut(s)	195, 441
AlwI	GGATC	4 cut(s)	17, 28, 41, 433
BamHI	GGATCC	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	292
BauI	CACGAG	1 cut(s)	261
BciT130I	CCWGG	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	195, 441
BcuI	ACTAGT	1 cut(s)	170
BfaI	CTAG	1 cut(s)	171
BfuAI	ACCTGC	1 cut(s)	301
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
Bme1390I	CCNGG	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	3 cut(s)	153, 217, 306
Bse1I	ACTGG	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	152
BsmAI	GTCTC	2 cut(s)	195, 441
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	6 cut(s)	22, 33, 82, 102, 334, 438
BspACI	CCGC	2 cut(s)	166, 404
BspHI	TCATGA	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	35
BspMI	ACCTGC	1 cut(s)	301
BspPI	GGATC	4 cut(s)	17, 28, 41, 433
BsrI	ACTGG	1 cut(s)	152
BssMI	GATC	6 cut(s)	22, 33, 82, 102, 334, 438
BssNAI	GTATAC	1 cut(s)	462
BssSI	CACGAG	1 cut(s)	261
Bst1107I	GTATAC	1 cut(s)	462
Bst2BI	CACGAG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	459
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	2 cut(s)	210, 443
BstKTI	GATC	6 cut(s)	25, 36, 85, 105, 337, 441
BstMAI	GTCTC	2 cut(s)	195, 441
BstMBI	GATC	6 cut(s)	22, 33, 82, 102, 334, 438
BstMWI	GCNNNNNNNGC	1 cut(s)	316
BstNI	CCWGG	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	36
BstX2I	RGATCY	2 cut(s)	33, 438
BstYI	RGATCY	2 cut(s)	33, 438
BstZ17I	GTATAC	1 cut(s)	462
BveI	ACCTGC	1 cut(s)	301
Cac8I	GCNNGC	1 cut(s)	222
CciI	TCATGA	1 cut(s)	15
CviAII	CATG	3 cut(s)	16, 197, 205
CviJI	RGCY	6 cut(s)	55, 113, 151, 224, 290, 355
CviKI_1	RGCY	6 cut(s)	55, 113, 151, 224, 290, 355
DdeI	CTNAG	2 cut(s)	210, 443
DpnI	GATC	6 cut(s)	24, 35, 84, 104, 336, 440
DpnII	GATC	6 cut(s)	22, 33, 82, 102, 334, 438
Eco24I	GRGCYC	1 cut(s)	292
Eco32I	GATATC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	36
EcoRV	GATATC	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	292
FaeI	CATG	3 cut(s)	19, 200, 208
FatI	CATG	3 cut(s)	15, 196, 204
FblI	GTMKAC	1 cut(s)	461
Fnu4HI	GCNGC	1 cut(s)	405
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	1 cut(s)	405
FspBI	CTAG	1 cut(s)	171
GluI	GCNGC	1 cut(s)	405
Hin1II	CATG	3 cut(s)	19, 200, 208
HinfI	GANTC	1 cut(s)	264
Hpy166II	GTNNAC	2 cut(s)	145, 462
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	5 cut(s)	16, 261, 350, 421, 436
Hpy8I	GTNNAC	2 cut(s)	145, 462
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	459
HpyCH4V	TGCA	2 cut(s)	126, 191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	316
HpyF3I	CTNAG	2 cut(s)	210, 443
Hsp92II	CATG	3 cut(s)	19, 200, 208
Kzo9I	GATC	6 cut(s)	22, 33, 82, 102, 334, 438
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	6 cut(s)	23, 50, 133, 278, 296, 305
LweI	GCATC	3 cut(s)	153, 217, 306
MaeI	CTAG	1 cut(s)	171
MaeIII	GTNAC	2 cut(s)	47, 173
MalI	GATC	6 cut(s)	24, 35, 84, 104, 336, 440
MboI	GATC	6 cut(s)	22, 33, 82, 102, 334, 438
MboII	GAAGA	1 cut(s)	329
MflI	RGATCY	2 cut(s)	33, 438
MhlI	GDGCHC	1 cut(s)	292
MlyI	GAGTC	1 cut(s)	273
MnlI	CCTC	1 cut(s)	278
MseI	TTAA	1 cut(s)	42
MspR9I	CCNGG	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	316
NdeII	GATC	6 cut(s)	22, 33, 82, 102, 334, 438
NlaIII	CATG	3 cut(s)	19, 200, 208
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	47
NspI	RCATGY	1 cut(s)	208
PagI	TCATGA	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	1 cut(s)	391
PkrI	GCNGC	1 cut(s)	406
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	35
PsuI	RGATCY	2 cut(s)	33, 438
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	6 cut(s)	22, 33, 82, 102, 334, 438
SchI	GAGTC	1 cut(s)	273
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	6 cut(s)	57, 115, 226, 256, 315, 357
SfaNI	GCATC	3 cut(s)	153, 217, 306
SpeI	ACTAGT	1 cut(s)	170
SsiI	CCGC	2 cut(s)	166, 404
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	459
TaqI	TCGA	1 cut(s)	349
TaqII	GACCGA	1 cut(s)	35
TauI	GCSGC	1 cut(s)	407
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseFI	GTSAC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	2 cut(s)	4, 251
XceI	RCATGY	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	461
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.