Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0000818

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTTGAGCATAGGCTTCAAGAAGAAAATTTACGAAGTCTACAGACATCTACAAGATACCCTACAAGTTTGCTTGATCTCCGCGACGCTCCCTAATGAAATTTTGGAGATGACCAACAAGTTCATGACCGATCCTATAAGGATCCTGGTTAAATGTGACGAGCTGACTTTGGAGTTTGATACTCTGTGCGATCTCTATGATACCCTTACGATCACACAAGCTGTTATTTTCTGCAACATAAGGCGAAAAGTGGACTGGCTTACTGAAAAGATGCGGACTAGTAACTTTTCTGTGTCTGCAACGCATGGAGACATGCCTCAGAAGGAGCGAGCTGATGCTATTATGAAAGAGTTTCAGAAAGGTCTTTCACGAGTCCTCATCACAACTGATGTTTGGGCTCTGGGCATCGATGTTCAGCAGGTTTCGCTGGTTATCAACTATGATCTTCCAAATAATCGAGAGCTATACATACATAGGATTGGTCGTTCGGGTCGGTTTGGACGAAAGGGTGCGGCAATAAACTTTGTCAAGAAAGATGATATCAGGATCCTAAGAGACATTGAACAATACACAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

192

Amino Acids

22.31

Weight (kDa)

7.65

Isoelectric Point (pI)

34.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51380 AT1G51380 AT1G51380 AT1G51380 AT3G19760
fragaria_vesca	FvH4_4g36800 FvH4_4g36800 FvH4_4g36800 FvH4_6g49811 FvH4_6g49900
malus_domestica	MD09G1053900.v1.1 MD09G1189300.v1.1 MD09G1268200.v1.1 MD09G1268600.v1.1 MD09G1268800.v1.1 MD13G1006800.v1.1 MD15G1056500.v1.1 MD16G1001000.v1.1
prunus_persica	Prupe.1G346100_v2.0.a1 Prupe.3G165200_v2.0.a1
pyrus_communis	pycom111g04510 pycom16g00440
rosa_chinensis	RchiOBHm_Chr0c44g0503461 RchiOBHm_Chr0c44g0503501 RchiOBHm_Chr0c44g0503531 RchiOBHm_Chr0c44g0503561 RchiOBHm_Chr0c44g0503691 RchiOBHm_Chr0c44g0503701 RchiOBHm_Chr0c44g0503721 RchiOBHm_Chr0c44g0503751 RchiOBHm_Chr2g0169961 RchiOBHm_Chr4g0386061 RchiOBHm_Chr4g0386101 RchiOBHm_Chr4g0386151 RchiOBHm_Chr4g0386181 RchiOBHm_Chr4g0386221 RchiOBHm_Chr4g0386241 RchiOBHm_Chr4g0386301 RchiOBHm_Chr4g0386341 RchiOBHm_Chr4g0386361 RchiOBHm_Chr4g0446531
rosa_laevigata	RLG00000005651 RLG00000010170 RLG00000010175 RLG00000021914
rosa_multiflora	Rmu_sc0005526.1_g000001 Rmu_sc0005795.1_g000003 Rmu_sc0013078.1_g000019 Rmu_sc0022031.1_g000001 Rmu_ssc0000389.1_g000007
rosa_roxburghii	Rroxscaffold_5G00333840 Rroxscaffold_5G00386950
rosa_rugosa	Rorug02G0544700 Rorug02G0545100 Rorug04G0372300
rosa_samantha	Rh2AG617000 Rh2AG617300 Rh2CG597900 Rh2DG639700 Rh2DG640100 Rh2DG640400 Rh4AG010700 Rh4AG433900 Rh4BG007600 Rh4BG443100 Rh4DG441700
rosa_wichuraiana	Rw2G051090 Rw4G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	409
AccI	GTMKAC	1 cut(s)	39
AccII	CGCG	1 cut(s)	83
AciI	CCGC	3 cut(s)	81, 274, 512
AclWI	GGATC	5 cut(s)	125, 136, 149, 541, 554
AcsI	RAATTY	2 cut(s)	27, 99
AgsI	TTSAA	2 cut(s)	19, 563
AhlI	ACTAGT	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	144
AloI	GAACNNNNNNTCC	2 cut(s)	469, 501
AluBI	AGCT	4 cut(s)	163, 221, 332, 463
AluI	AGCT	4 cut(s)	163, 221, 332, 463
Alw26I	GTCTC	2 cut(s)	303, 549
AlwI	GGATC	5 cut(s)	125, 136, 149, 541, 554
ApoI	RAATTY	2 cut(s)	27, 99
BamHI	GGATCC	2 cut(s)	141, 546
BanII	GRGCYC	1 cut(s)	400
BarI	GAAGNNNNNNTAC	2 cut(s)	14, 46
BauI	CACGAG	1 cut(s)	369
BciT130I	CCWGG	1 cut(s)	146
BcoDI	GTCTC	2 cut(s)	303, 549
BcuI	ACTAGT	1 cut(s)	278
BfaI	CTAG	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	40
BfuAI	ACCTGC	1 cut(s)	409
BisI	GCNGC	1 cut(s)	513
BlsI	GCNGC	1 cut(s)	514
Bme1390I	CCNGG	1 cut(s)	146
BmiI	GGNNCC	2 cut(s)	143, 548
BmrFI	CCNGG	1 cut(s)	146
BmsI	GCATC	3 cut(s)	261, 325, 414
Bsa29I	ATCGAT	1 cut(s)	408
Bse1I	ACTGG	1 cut(s)	260
BseBI	CCWGG	1 cut(s)	146
BseCI	ATCGAT	1 cut(s)	408
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	1 cut(s)	260
Bsh1236I	CGCG	1 cut(s)	83
BshVI	ATCGAT	1 cut(s)	408
BsmAI	GTCTC	2 cut(s)	303, 549
Bsp1286I	GDGCHC	1 cut(s)	400
Bsp143I	GATC	7 cut(s)	75, 130, 141, 190, 210, 442, 546
BspACI	CCGC	3 cut(s)	81, 274, 512
BspCNI	CTCAG	1 cut(s)	331
BspDI	ATCGAT	1 cut(s)	408
BspFNI	CGCG	1 cut(s)	83
BspHI	TCATGA	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	143, 548
BspMI	ACCTGC	1 cut(s)	409
BspPI	GGATC	5 cut(s)	125, 136, 149, 541, 554
BsrI	ACTGG	1 cut(s)	260
BssMI	GATC	7 cut(s)	75, 130, 141, 190, 210, 442, 546
BssSI	CACGAG	1 cut(s)	369
Bst2BI	CACGAG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	2 cut(s)	318, 551
BstFNI	CGCG	1 cut(s)	83
BstKTI	GATC	7 cut(s)	78, 133, 144, 193, 213, 445, 549
BstMAI	GTCTC	2 cut(s)	303, 549
BstMBI	GATC	7 cut(s)	75, 130, 141, 190, 210, 442, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	424
BstNI	CCWGG	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	40
BstUI	CGCG	1 cut(s)	83
BstX2I	RGATCY	2 cut(s)	141, 546
BstYI	RGATCY	2 cut(s)	141, 546
Bsu15I	ATCGAT	1 cut(s)	408
BsuTUI	ATCGAT	1 cut(s)	408
BveI	ACCTGC	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	330
CciI	TCATGA	1 cut(s)	123
ClaI	ATCGAT	1 cut(s)	408
CseI	GACGC	1 cut(s)	94
CviAII	CATG	3 cut(s)	124, 305, 313
CviJI	RGCY	7 cut(s)	15, 163, 221, 259, 332, 398, 463
CviKI_1	RGCY	7 cut(s)	15, 163, 221, 259, 332, 398, 463
DdeI	CTNAG	2 cut(s)	318, 551
DpnI	GATC	7 cut(s)	77, 132, 143, 192, 212, 444, 548
DpnII	GATC	7 cut(s)	75, 130, 141, 190, 210, 442, 546
Eco24I	GRGCYC	1 cut(s)	400
Eco32I	GATATC	1 cut(s)	541
EcoRII	CCWGG	1 cut(s)	144
EcoRV	GATATC	1 cut(s)	541
EcoT38I	GRGCYC	1 cut(s)	400
FaeI	CATG	3 cut(s)	127, 308, 316
FatI	CATG	3 cut(s)	123, 304, 312
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	513
FriOI	GRGCYC	1 cut(s)	400
Fsp4HI	GCNGC	1 cut(s)	513
FspBI	CTAG	1 cut(s)	279
GluI	GCNGC	1 cut(s)	513
HgaI	GACGC	1 cut(s)	94
Hin1II	CATG	3 cut(s)	127, 308, 316
HinfI	GANTC	1 cut(s)	372
Hpy166II	GTNNAC	2 cut(s)	40, 253
Hpy188I	TCNGA	2 cut(s)	321, 357
Hpy188III	TCNNGA	6 cut(s)	19, 124, 369, 458, 529, 544
Hpy8I	GTNNAC	2 cut(s)	40, 253
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	316
HpyCH4V	TGCA	2 cut(s)	234, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	424
HpyF3I	CTNAG	2 cut(s)	318, 551
Hsp92II	CATG	3 cut(s)	127, 308, 316
Kzo9I	GATC	7 cut(s)	75, 130, 141, 190, 210, 442, 546
LmnI	GCTCC	2 cut(s)	93, 325
LpnPI	CCDG	7 cut(s)	131, 158, 241, 386, 404, 413, 529
LweI	GCATC	3 cut(s)	261, 325, 414
MaeI	CTAG	1 cut(s)	279
MaeIII	GTNAC	2 cut(s)	155, 281
MalI	GATC	7 cut(s)	77, 132, 143, 192, 212, 444, 548
MboI	GATC	7 cut(s)	75, 130, 141, 190, 210, 442, 546
MboII	GAAGA	2 cut(s)	34, 437
MflI	RGATCY	2 cut(s)	141, 546
MhlI	GDGCHC	1 cut(s)	400
MluCI	AATT	2 cut(s)	27, 99
MlyI	GAGTC	1 cut(s)	381
MnlI	CCTC	2 cut(s)	327, 386
MseI	TTAA	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	146
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	1 cut(s)	424
NdeII	GATC	7 cut(s)	75, 130, 141, 190, 210, 442, 546
NlaIII	CATG	3 cut(s)	127, 308, 316
NlaIV	GGNNCC	2 cut(s)	143, 548
NmuCI	GTSAC	1 cut(s)	155
NspI	RCATGY	1 cut(s)	316
PagI	TCATGA	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	499
PkrI	GCNGC	1 cut(s)	514
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	143, 548
PsuI	RGATCY	2 cut(s)	141, 546
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	1 cut(s)	513
Sau3AI	GATC	7 cut(s)	75, 130, 141, 190, 210, 442, 546
SchI	GAGTC	1 cut(s)	381
ScrFI	CCNGG	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	400
SetI	ASST	6 cut(s)	165, 223, 334, 364, 423, 465
SfaNI	GCATC	3 cut(s)	261, 325, 414
SfcI	CTRYAG	1 cut(s)	40
SpeI	ACTAGT	1 cut(s)	278
Sse9I	AATT	2 cut(s)	27, 99
SsiI	CCGC	3 cut(s)	81, 274, 512
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	1 cut(s)	144
TaqI	TCGA	2 cut(s)	408, 457
TaqII	GACCGA	1 cut(s)	143
TasI	AATT	2 cut(s)	27, 99
TauI	GCSGC	1 cut(s)	515
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	3 cut(s)	111, 112, 359
XapI	RAATTY	2 cut(s)	27, 99
XceI	RCATGY	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	39
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.