Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000818

Physical Location & Seq

Genomic Coordinates Forward (+)

1681179 .. 1683221

Gene Structure 2043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35946

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGAAGTGAGAAGGCGCCAAATGAATAAGTGTTGGCGTTTTTTAAGTTTGTCCGTCATGTTGTGCGTGGGTTTTAGCCAAAAGGCCTTGAAACGTGCCGACAGATGGGGTCGTCCACTGGGGGTTCAGGCATTGATACTTTCTCCAACGAGGGAATTGGCGGCCCAGACAGATAAAGCGATATTGGCAATTGGAAATTACCTAAATATTCAAGTACATTCATGCATAGGAGGCAAAAGCTTGGGTGAAGATATCAGAAGGCTAGAGAACAGAGTTCATGTGGTGTCTGGAACTCCCGGTAGAGTCTGTGACATGCTCGACAGGAAAACTCTACGTCCTCGACAAATTAAATTATTAATTCTCGATGAATCTGATGAAATGTTGAGCAGAGGCTTCAAGGATCAGATTTACAACGTCTACCGCTATCTTTCGCATGAAGTCCAAGTATGCTTGATTTCTGCCACACTTCTAAATGAAATTCTCGAGATGACTAAACTATTCATGACTGATCCCGTAAGGATCTTGGTCAAGCGTGATGAGTTGACTTTACAGGGAATCAAGCAATTTTTTGTTTCAGTTGAAAGAGAAGATTGGAAGTTTGATACTCTCTGTGATCTCTATGATACCCTTACGATTACACAAGCTGTTGTTTTCTGCAACACAAAGCGAAAGGTCGATTGGCTCAGCGAAAAGTTGCGGAGCAATAACTTCACTGTGTCTTCAATGCATGGAGACATGCCTCAGAAAGAGAGAGATGCTATAATGAAAGACTTTAAGAACAGTGAATCACGAATCCTCATCACAACAGATGTTTGGGCTCGAGGCATCGATGTTCAACACGTTTCGTTGGTTATCAACTATGATCTTCCAAACAATCGAGAGCTTTACATTCATAGAATTGGTCGTTCGGGTCGTTTTGGACGCAAAGGTGTGGCAATCAACTTTGTCAAGAACGATGATATCAGGATTTTAAGAGACATTGAACAGTACTACAGTACCCAGATTGATGAGATGCCCATGAATGTGGCTGATTTAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

346

Amino Acids

40.18

Weight (kDa)

9.08

Isoelectric Point (pI)

41.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	38 - 159	4.6e-27	DEAD/DEAH box helicase
Helicase_C	PF00271	199 - 307	1.2e-35	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51380 AT1G51380 AT1G51380 AT1G51380 AT3G19760
fragaria_vesca	FvH4_4g36800 FvH4_4g36800 FvH4_4g36800 FvH4_6g49811 FvH4_6g49900
malus_domestica	MD09G1053900.v1.1 MD09G1189300.v1.1 MD09G1268200.v1.1 MD09G1268600.v1.1 MD09G1268800.v1.1 MD13G1006800.v1.1 MD15G1056500.v1.1 MD16G1001000.v1.1
prunus_persica	Prupe.1G346100_v2.0.a1 Prupe.3G165200_v2.0.a1
pyrus_communis	pycom111g04510 pycom16g00440
rosa_chinensis	RchiOBHm_Chr0c44g0503461 RchiOBHm_Chr0c44g0503501 RchiOBHm_Chr0c44g0503531 RchiOBHm_Chr0c44g0503561 RchiOBHm_Chr0c44g0503691 RchiOBHm_Chr0c44g0503701 RchiOBHm_Chr0c44g0503721 RchiOBHm_Chr0c44g0503751 RchiOBHm_Chr2g0169961 RchiOBHm_Chr4g0386061 RchiOBHm_Chr4g0386101 RchiOBHm_Chr4g0386151 RchiOBHm_Chr4g0386181 RchiOBHm_Chr4g0386221 RchiOBHm_Chr4g0386241 RchiOBHm_Chr4g0386301 RchiOBHm_Chr4g0386341 RchiOBHm_Chr4g0386361 RchiOBHm_Chr4g0446531
rosa_laevigata	RLG00000005651 RLG00000010170 RLG00000010175 RLG00000021914
rosa_multiflora	Rmu_sc0005526.1_g000001 Rmu_sc0005795.1_g000003 Rmu_sc0013078.1_g000019 Rmu_sc0022031.1_g000001 Rmu_ssc0000389.1_g000007
rosa_roxburghii	Rroxscaffold_5G00333840 Rroxscaffold_5G00386950
rosa_rugosa	Rorug02G0544700 Rorug02G0545100 Rorug04G0372300
rosa_samantha	Rh2AG617000 Rh2AG617300 Rh2CG597900 Rh2DG639700 Rh2DG640100 Rh2DG640400 Rh4AG010700 Rh4AG433900 Rh4BG007600 Rh4BG443100 Rh4DG441700
rosa_wichuraiana	Rw2G051090 Rw4G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	417
AciI	CCGC	3 cut(s)	161, 421, 697
AclWI	GGATC	3 cut(s)	408, 503, 527
AcsI	RAATTY	1 cut(s)	477
AcyI	GRCGYC	1 cut(s)	16
AfaI	GTAC	3 cut(s)	216, 989, 997
AfiI	CCNNNNNNNGG	1 cut(s)	105
AflIII	ACRYGT	1 cut(s)	838
AgsI	TTSAA	7 cut(s)	91, 212, 397, 581, 723, 836, 983
AjuI	GAANNNNNNNTTGG	2 cut(s)	661, 693
AluBI	AGCT	3 cut(s)	240, 644, 883
AluI	AGCT	3 cut(s)	240, 644, 883
Alw26I	GTCTC	2 cut(s)	726, 969
AlwI	GGATC	3 cut(s)	408, 503, 527
Ama87I	CYCGRG	2 cut(s)	482, 819
AoxI	GGCC	2 cut(s)	84, 162
ApoI	RAATTY	1 cut(s)	477
AseI	ATTAAT	1 cut(s)	356
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	257
AvaI	CYCGRG	2 cut(s)	482, 819
BaeI	ACNNNNGTAYC	2 cut(s)	979, 1012
BanI	GGYRCC	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	820
BbsI	GAAGAC	1 cut(s)	711
BccI	CCATC	1 cut(s)	99
BcnI	CCSGG	1 cut(s)	297
BcoDI	GTCTC	2 cut(s)	726, 969
BfaI	CTAG	1 cut(s)	263
BfmI	CTRYAG	1 cut(s)	991
BfoI	RGCGCY	1 cut(s)	19
BisI	GCNGC	1 cut(s)	162
BlpI	GCTNAGC	1 cut(s)	683
BlsI	GCNGC	1 cut(s)	163
BmcAI	AGTACT	1 cut(s)	989
Bme1390I	CCNGG	1 cut(s)	297
BmeT110I	CYCGRG	2 cut(s)	482, 819
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	297
BmrI	ACTGGG	1 cut(s)	128
BmsI	GCATC	3 cut(s)	745, 834, 1002
BmuI	ACTGGG	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	711
Bpu1102I	GCTNAGC	1 cut(s)	683
BpuMI	CCSGG	1 cut(s)	297
Bsa29I	ATCGAT	1 cut(s)	828
BsaHI	GRCGYC	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	123
BseCI	ATCGAT	1 cut(s)	828
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMII	CTCAG	2 cut(s)	697, 755
BseNI	ACTGG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	86, 164
BshNI	GGYRCC	1 cut(s)	15
BshVI	ATCGAT	1 cut(s)	828
BsiHKCI	CYCGRG	2 cut(s)	482, 819
BsiSI	CCGG	1 cut(s)	297
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmAI	GTCTC	2 cut(s)	726, 969
BsnI	GGCC	2 cut(s)	86, 164
BsoBI	CYCGRG	2 cut(s)	482, 819
Bsp1286I	GDGCHC	1 cut(s)	820
Bsp143I	GATC	5 cut(s)	400, 508, 519, 613, 862
Bsp1720I	GCTNAGC	1 cut(s)	683
BspACI	CCGC	3 cut(s)	161, 421, 697
BspANI	GGCC	2 cut(s)	86, 164
BspCNI	CTCAG	2 cut(s)	696, 754
BspDI	ATCGAT	1 cut(s)	828
BspHI	TCATGA	1 cut(s)	501
BspLI	GGNNCC	1 cut(s)	17
BspPI	GGATC	3 cut(s)	408, 503, 527
BspT107I	GGYRCC	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	123
BssMI	GATC	5 cut(s)	400, 508, 519, 613, 862
BssNI	GRCGYC	1 cut(s)	16
Bst4CI	ACNGT	4 cut(s)	715, 782, 987, 995
BstACI	GRCGYC	1 cut(s)	16
BstDEI	CTNAG	2 cut(s)	683, 741
BstH2I	RGCGCY	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	5 cut(s)	403, 511, 522, 616, 865
BstMAI	GTCTC	2 cut(s)	726, 969
BstMBI	GATC	5 cut(s)	400, 508, 519, 613, 862
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 231
BstNSI	RCATGY	2 cut(s)	316, 739
BstSCI	CCNGG	1 cut(s)	295
BstSFI	CTRYAG	1 cut(s)	991
BstV2I	GAAGAC	1 cut(s)	711
BstX2I	RGATCY	1 cut(s)	519
BstXI	CCANNNNNNTGG	1 cut(s)	1024
BstYI	RGATCY	1 cut(s)	519
Bsu15I	ATCGAT	1 cut(s)	828
BsuRI	GGCC	2 cut(s)	86, 164
BsuTUI	ATCGAT	1 cut(s)	828
BtsIMutI	CAGTG	3 cut(s)	116, 711, 787
CciI	TCATGA	1 cut(s)	501
CfoI	GCGC	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	163
ClaI	ATCGAT	1 cut(s)	828
CseI	GACGC	1 cut(s)	930
Csp6I	GTAC	3 cut(s)	215, 988, 996
CviAII	CATG	9 cut(s)	58, 222, 278, 313, 434, 502, 728, 736, 1018
CviQI	GTAC	3 cut(s)	215, 988, 996
DdeI	CTNAG	2 cut(s)	683, 741
DinI	GGCGCC	1 cut(s)	17
DpnI	GATC	5 cut(s)	402, 510, 521, 615, 864
DpnII	GATC	5 cut(s)	400, 508, 519, 613, 862
Eco147I	AGGCCT	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	820
Eco32I	GATATC	2 cut(s)	253, 961
Eco88I	CYCGRG	2 cut(s)	482, 819
EcoRV	GATATC	2 cut(s)	253, 961
EcoT22I	ATGCAT	2 cut(s)	227, 729
EcoT38I	GRGCYC	1 cut(s)	820
EgeI	GGCGCC	1 cut(s)	17
EheI	GGCGCC	1 cut(s)	17
FaeI	CATG	9 cut(s)	61, 225, 281, 316, 437, 505, 731, 739, 1021
FatI	CATG	9 cut(s)	57, 221, 277, 312, 433, 501, 727, 735, 1017
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	1 cut(s)	162
FriOI	GRGCYC	1 cut(s)	820
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	263
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	1 cut(s)	162
HaeII	RGCGCY	1 cut(s)	19
HaeIII	GGCC	2 cut(s)	86, 164
HapII	CCGG	1 cut(s)	297
HgaI	GACGC	1 cut(s)	930
HhaI	GCGC	1 cut(s)	18
Hin1I	GRCGYC	1 cut(s)	16
Hin1II	CATG	9 cut(s)	61, 225, 281, 316, 437, 505, 731, 739, 1021
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HincII	GTYRAC	1 cut(s)	543
HindII	GTYRAC	1 cut(s)	543
HindIII	AAGCTT	1 cut(s)	238
HinfI	GANTC	5 cut(s)	303, 368, 555, 785, 792
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	3 cut(s)	116, 418, 543
Hpy188I	TCNGA	4 cut(s)	257, 373, 405, 744
Hpy188III	TCNNGA	9 cut(s)	288, 362, 482, 484, 502, 789, 878, 949, 964
Hpy8I	GTNNAC	3 cut(s)	116, 418, 543
HpyAV	CCTTC	2 cut(s)	6, 252
HpyCH4III	ACNGT	4 cut(s)	715, 782, 987, 995
HpyCH4IV	ACGT	4 cut(s)	94, 334, 414, 840
HpyCH4V	TGCA	3 cut(s)	225, 657, 727
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 231
HpyF3I	CTNAG	2 cut(s)	683, 741
HpySE526I	ACGT	4 cut(s)	94, 334, 414, 840
Hsp92I	GRCGYC	1 cut(s)	16
Hsp92II	CATG	9 cut(s)	61, 225, 281, 316, 437, 505, 731, 739, 1021
HspAI	GCGC	1 cut(s)	16
KasI	GGCGCC	1 cut(s)	15
Kzo9I	GATC	5 cut(s)	400, 508, 519, 613, 862
LmnI	GCTCC	1 cut(s)	699
LpnPI	CCDG	9 cut(s)	104, 113, 179, 273, 307, 310, 536, 949, 1013
LweI	GCATC	3 cut(s)	745, 834, 1002
MaeI	CTAG	1 cut(s)	263
MaeII	ACGT	4 cut(s)	94, 334, 414, 840
MaeIII	GTNAC	1 cut(s)	308
MalI	GATC	5 cut(s)	402, 510, 521, 615, 864
MboI	GATC	5 cut(s)	400, 508, 519, 613, 862
MboII	GAAGA	4 cut(s)	260, 599, 711, 857
MfeI	CAATTG	1 cut(s)	189
MflI	RGATCY	1 cut(s)	519
MhlI	GDGCHC	1 cut(s)	820
MluCI	AATT	9 cut(s)	155, 189, 196, 345, 350, 357, 477, 563, 897
Mly113I	GGCGCC	1 cut(s)	16
MlyI	GAGTC	1 cut(s)	312
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	7 cut(s)	144, 224, 348, 383, 750, 806, 815
Mph1103I	ATGCAT	2 cut(s)	227, 729
MseI	TTAA	6 cut(s)	44, 348, 356, 774, 971, 1034
MslI	CAYNNNNRTG	1 cut(s)	1022
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	1 cut(s)	297
MunI	CAATTG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	185, 231
NarI	GGCGCC	1 cut(s)	16
NciI	CCSGG	1 cut(s)	297
NdeII	GATC	5 cut(s)	400, 508, 519, 613, 862
NlaIII	CATG	9 cut(s)	61, 225, 281, 316, 437, 505, 731, 739, 1021
NlaIV	GGNNCC	1 cut(s)	17
NmuCI	GTSAC	1 cut(s)	308
NsiI	ATGCAT	2 cut(s)	227, 729
NspI	RCATGY	2 cut(s)	316, 739
PaeR7I	CTCGAG	2 cut(s)	482, 819
PagI	TCATGA	1 cut(s)	501
PceI	AGGCCT	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	910
PfeI	GAWTC	4 cut(s)	368, 555, 785, 792
PkrI	GCNGC	1 cut(s)	163
PleI	GAGTC	1 cut(s)	311
PluTI	GGCGCC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	311
PshBI	ATTAAT	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	163
PspXI	VCTCGAGB	1 cut(s)	819
PsuI	RGATCY	1 cut(s)	519
RsaI	GTAC	3 cut(s)	216, 989, 997
RsaNI	GTAC	3 cut(s)	215, 988, 996
RseI	CAYNNNNRTG	1 cut(s)	1022
SaqAI	TTAA	6 cut(s)	44, 348, 356, 774, 971, 1034
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	5 cut(s)	400, 508, 519, 613, 862
Sau96I	GGNCC	1 cut(s)	163
ScaI	AGTACT	1 cut(s)	989
SchI	GAGTC	1 cut(s)	312
ScrFI	CCNGG	1 cut(s)	297
SduI	GDGCHC	1 cut(s)	820
SfaNI	GCATC	3 cut(s)	745, 834, 1002
SfcI	CTRYAG	1 cut(s)	991
SfoI	GGCGCC	1 cut(s)	17
Sfr274I	CTCGAG	2 cut(s)	482, 819
SlaI	CTCGAG	2 cut(s)	482, 819
SmiMI	CAYNNNNRTG	1 cut(s)	1022
SmlI	CTYRAG	2 cut(s)	482, 819
SmoI	CTYRAG	2 cut(s)	482, 819
Sse9I	AATT	9 cut(s)	155, 189, 196, 345, 350, 357, 477, 563, 897
SseBI	AGGCCT	1 cut(s)	86
SsiI	CCGC	3 cut(s)	161, 421, 697
SspDI	GGCGCC	1 cut(s)	15
SspI	AATATT	1 cut(s)	208
SspMI	CTAG	1 cut(s)	263
StuI	AGGCCT	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	295
TaaI	ACNGT	4 cut(s)	715, 782, 987, 995
TaiI	ACGT	4 cut(s)	97, 337, 417, 843
TaqI	TCGA	8 cut(s)	318, 340, 363, 483, 675, 820, 828, 877
TasI	AATT	9 cut(s)	155, 189, 196, 345, 350, 357, 477, 563, 897
TatI	WGTACW	2 cut(s)	214, 987
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	4 cut(s)	368, 555, 785, 792
Tru1I	TTAA	6 cut(s)	44, 348, 356, 774, 971, 1034
Tru9I	TTAA	6 cut(s)	44, 348, 356, 774, 971, 1034
TscAI	CASTG	3 cut(s)	123, 718, 787
TseFI	GTSAC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	308
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	3 cut(s)	123, 718, 787
VspI	ATTAAT	1 cut(s)	356
XapI	RAATTY	1 cut(s)	477
XceI	RCATGY	2 cut(s)	316, 739
XhoI	CTCGAG	2 cut(s)	482, 819
XmiI	GTMKAC	1 cut(s)	417
XspI	CTAG	1 cut(s)	263
ZrmI	AGTACT	1 cut(s)	989
Zsp2I	ATGCAT	2 cut(s)	227, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.