Rw2G051090

Eukaryotic initiation factor

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
78777625 .. 78779298
1674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G051090.1

Sequence Viewer

Length: 1206 bp
ATGAACCGACTGGTTCAGGGCGGCGGCAAGGTGCTGAAGGAGAAGCTGGAGTTTGTGCCGTCGGATGATATAGAGCCGATCATGAGCTTCGATCAGATGAACCTCAAGGACGAGCTCCTCCGAGGCATCTACAACTACGGCTTCGAGAAGCCCTCCGCCATCCAGCAAAGGGCCATCAGACCCATAATCGAGGGCCGCGACGTCATAGCTCAGGCTCAATCTGGCACTGGAAAGACCTCCATGATTGCCCTAGCTTCTTGCCAAACCGTCGACACCTCCTCCAGAGAGGTTCAGGTGTTGATATTGTCTCCAACGAGGGAATTGGCTGCACAGACAGAGAAAGTGATACTGGCAATGGGAAACTACATGAGTATTCAAGCGCATTCCTGCATTGGAGGCAAAAGCGTGGGTGAGGATATCAGAAAGCTAGAGAACGGAGTTCAGGTGGTGTCTGGAACTCCCGGTAGAGTCCATGACATGATTCAGAGGGGAAGTCTACGCACTCGACACATCAAACTACTAATTCTTGATGAATCTGATGAGATGTTGAGCAGAGGCTTCAAGAAGAAAATTTACGAAGTCTACAGACATCTACAAGATACCCTACAAGTTTGCTTGATCTCCGCGACGCTCCCTAATGAAATTTTGCAGATGACCAACAAATTCATGACCGATCCTATAAGGATCCTGGTTAAACGTGACGAGCTGACTTTGGAGGGAATCAAGCAATTTTTCGTTGCAGTTGAAAAAGAAGATTGGAAGTTTGATACTCTGTGCGATCTCTATGATACCCTTACGATCACACAAGCTGTTATTTTCTGCAACACAAAGCGAAAAGTGGACTGGCTTACTGAAAAGATGAGGACTAGTAACTTTGCTGTGTCTGCAATGCATGGAGACATGCCTCAGAAGGAGAGAGATGCTATTATGAAGGAGTTTCAGAAAGGTCTTTCACGAGTCCTCATCACAACTGATGTTTGGGCTCGGGGCATCGATGTTCAGCAGGTTTCGCTGGTTATCAACTACGATCTTCCAAATAATCGAGAGCTATACATACATAGGATTGGTCGTTCGGGTCGATTTGGACGAAAGGGTGTGGCAATAAACTTTGTCAAGAAAGATGATATCAGGATCTTAAGAGACATTGAACAGTACTACAGTACCCAGATTGACGAGATGCCCATGATTGTGGCTGATTTACTATGA

Protein Analysis

401

Amino Acids

45.7

Weight (kDa)

8.14

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 51 - 200 5.3e-07 Type III restriction enzyme, res subunit
DEAD PF00270 53 - 215 1.3e-43 DEAD/DEAH box helicase
Helicase_C PF00271 254 - 362 1.7e-34 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 204
Acc36I ACCTGC 1 cut(s) 994
AccI GTMKAC 3 cut(s) 270, 496, 582
AccII CGCG 2 cut(s) 198, 626
AciI CCGC 5 cut(s) 21, 24, 156, 196, 624
AclWI GGATC 4 cut(s) 668, 679, 692, 1139
AcsI RAATTY 3 cut(s) 570, 642, 662
AcuI CTGAAG 1 cut(s) 56
AcyI GRCGYC 1 cut(s) 201
AfaI GTAC 2 cut(s) 1154, 1162
AfiI CCNNNNNNNGG 1 cut(s) 169
AflII CTTAAG 1 cut(s) 1135
AgsI TTSAA 4 cut(s) 377, 562, 746, 1148
AhlI ACTAGT 1 cut(s) 866
AjnI CCWGG 1 cut(s) 687
AloI GAACNNNNNNTCC 2 cut(s) 1054, 1086
AluBI AGCT 9 cut(s) 46, 87, 115, 209, 254, 427, 706, 809, 1048
AluI AGCT 9 cut(s) 46, 87, 115, 209, 254, 427, 706, 809, 1048
Alw21I GWGCWC 1 cut(s) 117
Alw26I GTCTC 3 cut(s) 312, 891, 1134
AlwI GGATC 4 cut(s) 668, 679, 692, 1139
Ama87I CYCGRG 1 cut(s) 984
AoxI GGCC 2 cut(s) 171, 193
ApeKI GCWGC 1 cut(s) 326
ApoI RAATTY 3 cut(s) 570, 642, 662
AspLEI GCGC 1 cut(s) 382
AspS9I GGNCC 2 cut(s) 171, 193
AsuC2I CCSGG 1 cut(s) 462
AsuHPI GGTGA 1 cut(s) 422
AvaI CYCGRG 1 cut(s) 984
BaeI ACNNNNGTAYC 2 cut(s) 1144, 1177
BamHI GGATCC 1 cut(s) 684
BanII GRGCYC 2 cut(s) 117, 985
BarI GAAGNNNNNNTAC 2 cut(s) 557, 589
BauI CACGAG 1 cut(s) 954
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 313
BccI CCATC 2 cut(s) 167, 182
BceAI ACGGC 2 cut(s) 43, 154
BciT130I CCWGG 1 cut(s) 689
BcnI CCSGG 1 cut(s) 462
BcoDI GTCTC 3 cut(s) 312, 891, 1134
BcuI ACTAGT 1 cut(s) 866
BfaI CTAG 3 cut(s) 251, 428, 867
BfmI CTRYAG 2 cut(s) 583, 1156
BfrI CTTAAG 1 cut(s) 1135
BfuAI ACCTGC 1 cut(s) 994
BisI GCNGC 4 cut(s) 22, 25, 196, 327
BlsI GCNGC 4 cut(s) 23, 26, 197, 328
BmcAI AGTACT 1 cut(s) 1154
Bme1390I CCNGG 2 cut(s) 462, 689
BmeT110I CYCGRG 1 cut(s) 984
BmgT120I GGNCC 2 cut(s) 171, 193
BmiI GGNNCC 1 cut(s) 686
BmrFI CCNGG 2 cut(s) 462, 689
BmsI GCATC 4 cut(s) 135, 910, 999, 1167
BplI GAGNNNNNCTC 2 cut(s) 137, 169
BpmI CTGGAG 2 cut(s) 68, 265
Bpu10I CCTNAGC 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 462
Bsa29I ATCGAT 1 cut(s) 993
BsaHI GRCGYC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 121
BsaXI ACNNNNNCTCC 4 cut(s) 263, 293, 429, 459
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse1I ACTGG 4 cut(s) 15, 232, 354, 848
Bse3DI GCAATG 2 cut(s) 360, 894
BseBI CCWGG 1 cut(s) 689
BseCI ATCGAT 1 cut(s) 993
BseDI CCNNGG 1 cut(s) 121
BseGI GGATG 2 cut(s) 70, 159
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMI GCAATG 2 cut(s) 360, 894
BseMII CTCAG 2 cut(s) 224, 920
BseNI ACTGG 4 cut(s) 15, 232, 354, 848
BseRI GAGGAG 2 cut(s) 107, 268
BseXI GCAGC 1 cut(s) 313
BsgI GTGCAG 1 cut(s) 312
Bsh1236I CGCG 2 cut(s) 198, 626
BshFI GGCC 2 cut(s) 173, 195
BshVI ATCGAT 1 cut(s) 993
BsiHKAI GWGCWC 1 cut(s) 117
BsiHKCI CYCGRG 1 cut(s) 984
BsiSI CCGG 1 cut(s) 462
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 3 cut(s) 312, 891, 1134
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 2 cut(s) 173, 195
BsoBI CYCGRG 1 cut(s) 984
Bsp1286I GDGCHC 2 cut(s) 117, 985
Bsp143I GATC 9 cut(s) 78, 91, 618, 673, 684, 778, 798, 1027, 1131
BspACI CCGC 5 cut(s) 21, 24, 156, 196, 624
BspANI GGCC 2 cut(s) 173, 195
BspCNI CTCAG 2 cut(s) 223, 919
BspDI ATCGAT 1 cut(s) 993
BspFNI CGCG 2 cut(s) 198, 626
BspHI TCATGA 2 cut(s) 81, 666
BspLI GGNNCC 1 cut(s) 686
BspMI ACCTGC 1 cut(s) 994
BspPI GGATC 4 cut(s) 668, 679, 692, 1139
BspTI CTTAAG 1 cut(s) 1135
BsrDI GCAATG 2 cut(s) 360, 894
BsrI ACTGG 4 cut(s) 15, 232, 354, 848
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 9 cut(s) 78, 91, 618, 673, 684, 778, 798, 1027, 1131
BssNI GRCGYC 1 cut(s) 201
BssSI CACGAG 1 cut(s) 954
Bst2BI CACGAG 1 cut(s) 954
Bst2UI CCWGG 1 cut(s) 689
Bst4CI ACNGT 3 cut(s) 268, 1152, 1160
BstACI GRCGYC 1 cut(s) 201
BstAFI CTTAAG 1 cut(s) 1135
BstDEI CTNAG 2 cut(s) 210, 906
BstF5I GGATG 2 cut(s) 70, 159
BstFNI CGCG 2 cut(s) 198, 626
BstHHI GCGC 1 cut(s) 382
BstKTI GATC 9 cut(s) 81, 94, 621, 676, 687, 781, 801, 1030, 1134
BstMAI GTCTC 3 cut(s) 312, 891, 1134
BstMBI GATC 9 cut(s) 78, 91, 618, 673, 684, 778, 798, 1027, 1131
BstMWI GCNNNNNNNGC 3 cut(s) 396, 884, 1009
BstNI CCWGG 1 cut(s) 689
BstNSI RCATGY 1 cut(s) 904
BstSCI CCNGG 2 cut(s) 460, 687
BstSFI CTRYAG 2 cut(s) 583, 1156
BstUI CGCG 2 cut(s) 198, 626
BstV1I GCAGC 1 cut(s) 313
BstX2I RGATCY 2 cut(s) 684, 1131
BstXI CCANNNNNNTGG 1 cut(s) 1189
BstYI RGATCY 2 cut(s) 684, 1131
Bsu15I ATCGAT 1 cut(s) 993
BsuRI GGCC 2 cut(s) 173, 195
BsuTUI ATCGAT 1 cut(s) 993
BtsCI GGATG 2 cut(s) 70, 159
BtsIMutI CAGTG 1 cut(s) 225
BveI ACCTGC 1 cut(s) 994
CciI TCATGA 2 cut(s) 81, 666
CfoI GCGC 1 cut(s) 382
Cfr13I GGNCC 2 cut(s) 171, 193
ClaI ATCGAT 1 cut(s) 993
CseI GACGC 1 cut(s) 637
Csp6I GTAC 2 cut(s) 1153, 1161
CviAII CATG 9 cut(s) 82, 241, 367, 473, 478, 667, 893, 901, 1183
CviQI GTAC 2 cut(s) 1153, 1161
DdeI CTNAG 2 cut(s) 210, 906
DpnI GATC 9 cut(s) 80, 93, 620, 675, 686, 780, 800, 1029, 1133
DpnII GATC 9 cut(s) 78, 91, 618, 673, 684, 778, 798, 1027, 1131
EciI GGCGGA 1 cut(s) 145
Ecl136II GAGCTC 1 cut(s) 115
Eco24I GRGCYC 2 cut(s) 117, 985
Eco32I GATATC 2 cut(s) 418, 1126
Eco53kI GAGCTC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 984
EcoICRI GAGCTC 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 687
EcoRV GATATC 2 cut(s) 418, 1126
EcoT22I ATGCAT 1 cut(s) 894
EcoT38I GRGCYC 2 cut(s) 117, 985
FaeI CATG 9 cut(s) 85, 244, 370, 476, 481, 670, 896, 904, 1186
FatI CATG 9 cut(s) 81, 240, 366, 472, 477, 666, 892, 900, 1182
FblI GTMKAC 3 cut(s) 270, 496, 582
Fnu4HI GCNGC 4 cut(s) 22, 25, 196, 327
FokI GGATG 2 cut(s) 77, 146
FriOI GRGCYC 2 cut(s) 117, 985
Fsp4HI GCNGC 4 cut(s) 22, 25, 196, 327
FspBI CTAG 3 cut(s) 251, 428, 867
GlaI GCGC 1 cut(s) 381
GluI GCNGC 4 cut(s) 22, 25, 196, 327
GsuI CTGGAG 2 cut(s) 68, 265
HaeIII GGCC 2 cut(s) 173, 195
HapII CCGG 1 cut(s) 462
HgaI GACGC 1 cut(s) 637
HhaI GCGC 1 cut(s) 382
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 9 cut(s) 85, 244, 370, 476, 481, 670, 896, 904, 1186
Hin6I GCGC 1 cut(s) 380
HinP1I GCGC 1 cut(s) 380
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 5 cut(s) 468, 481, 533, 720, 957
HpaII CCGG 1 cut(s) 462
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 4 cut(s) 271, 497, 583, 841
Hpy188I TCNGA 9 cut(s) 64, 96, 122, 179, 422, 486, 538, 909, 942
Hpy8I GTNNAC 4 cut(s) 271, 497, 583, 841
Hpy99I CGWCG 4 cut(s) 64, 203, 272, 631
HpyAV CCTTC 3 cut(s) 31, 904, 925
HpyCH4III ACNGT 3 cut(s) 268, 1152, 1160
HpyCH4IV ACGT 2 cut(s) 201, 697
HpyCH4V TGCA 7 cut(s) 329, 390, 649, 740, 822, 887, 892
HpyF10VI GCNNNNNNNGC 3 cut(s) 396, 884, 1009
HpyF3I CTNAG 2 cut(s) 210, 906
HpySE526I ACGT 2 cut(s) 201, 697
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 9 cut(s) 85, 244, 370, 476, 481, 670, 896, 904, 1186
HspAI GCGC 1 cut(s) 380
Kzo9I GATC 9 cut(s) 78, 91, 618, 673, 684, 778, 798, 1027, 1131
LmnI GCTCC 2 cut(s) 120, 636
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 4 cut(s) 135, 910, 999, 1167
MaeI CTAG 3 cut(s) 251, 428, 867
MaeII ACGT 2 cut(s) 201, 697
MaeIII GTNAC 2 cut(s) 698, 869
MalI GATC 9 cut(s) 80, 93, 620, 675, 686, 780, 800, 1029, 1133
MboI GATC 9 cut(s) 78, 91, 618, 673, 684, 778, 798, 1027, 1131
MboII GAAGA 3 cut(s) 577, 764, 1022
MflI RGATCY 2 cut(s) 684, 1131
MhlI GDGCHC 2 cut(s) 117, 985
MluCI AATT 6 cut(s) 320, 522, 570, 642, 662, 728
MlyI GAGTC 2 cut(s) 477, 966
MmeI TCCRAC 2 cut(s) 42, 335
Mph1103I ATGCAT 1 cut(s) 894
MseI TTAA 2 cut(s) 693, 1136
MslI CAYNNNNRTG 1 cut(s) 1187
MspCI CTTAAG 1 cut(s) 1135
MspI CCGG 1 cut(s) 462
MspR9I CCNGG 2 cut(s) 462, 689
Mva1269I GAATGC 1 cut(s) 382
MvaI CCWGG 1 cut(s) 689
MvnI CGCG 2 cut(s) 198, 626
MwoI GCNNNNNNNGC 3 cut(s) 396, 884, 1009
NciI CCSGG 1 cut(s) 462
NdeII GATC 9 cut(s) 78, 91, 618, 673, 684, 778, 798, 1027, 1131
NlaIII CATG 9 cut(s) 85, 244, 370, 476, 481, 670, 896, 904, 1186
NlaIV GGNNCC 1 cut(s) 686
NmuCI GTSAC 1 cut(s) 698
NsiI ATGCAT 1 cut(s) 894
NspI RCATGY 1 cut(s) 904
PagI TCATGA 2 cut(s) 81, 666
PcsI WCGNNNNNNNCGW 3 cut(s) 195, 1075, 1084
PctI GAATGC 1 cut(s) 382
PfeI GAWTC 3 cut(s) 481, 533, 720
PkrI GCNGC 4 cut(s) 23, 26, 197, 328
PleI GAGTC 2 cut(s) 476, 965
PpsI GAGTC 2 cut(s) 476, 965
Psp124BI GAGCTC 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 687
PspGI CCWGG 1 cut(s) 687
PspN4I GGNNCC 1 cut(s) 686
PspPI GGNCC 2 cut(s) 171, 193
PsuI RGATCY 2 cut(s) 684, 1131
RsaI GTAC 2 cut(s) 1154, 1162
RsaNI GTAC 2 cut(s) 1153, 1161
RseI CAYNNNNRTG 1 cut(s) 1187
SacI GAGCTC 1 cut(s) 117
SalI GTCGAC 1 cut(s) 269
SaqAI TTAA 2 cut(s) 693, 1136
SatI GCNGC 4 cut(s) 22, 25, 196, 327
Sau3AI GATC 9 cut(s) 78, 91, 618, 673, 684, 778, 798, 1027, 1131
Sau96I GGNCC 2 cut(s) 171, 193
ScaI AGTACT 1 cut(s) 1154
SchI GAGTC 2 cut(s) 477, 966
ScrFI CCNGG 2 cut(s) 462, 689
SduI GDGCHC 2 cut(s) 117, 985
SfaNI GCATC 4 cut(s) 135, 910, 999, 1167
SfcI CTRYAG 2 cut(s) 583, 1156
SmiMI CAYNNNNRTG 1 cut(s) 1187
SmlI CTYRAG 2 cut(s) 104, 1135
SmoI CTYRAG 2 cut(s) 104, 1135
SpeI ACTAGT 1 cut(s) 866
Sse9I AATT 6 cut(s) 320, 522, 570, 642, 662, 728
SsiI CCGC 5 cut(s) 21, 24, 156, 196, 624
SspMI CTAG 3 cut(s) 251, 428, 867
SstI GAGCTC 1 cut(s) 117
StyD4I CCNGG 2 cut(s) 460, 687
TaaI ACNGT 3 cut(s) 268, 1152, 1160
TaiI ACGT 2 cut(s) 204, 700
TaqI TCGA 8 cut(s) 90, 144, 189, 270, 505, 993, 1042, 1078
TaqII GACCGA 1 cut(s) 686
TasI AATT 6 cut(s) 320, 522, 570, 642, 662, 728
TatI WGTACW 1 cut(s) 1152
TauI GCSGC 3 cut(s) 24, 27, 198
TfiI GAWTC 3 cut(s) 481, 533, 720
Tru1I TTAA 2 cut(s) 693, 1136
Tru9I TTAA 2 cut(s) 693, 1136
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 1 cut(s) 698
TseI GCWGC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 698
TspDTI ATGAA 6 cut(s) 17, 113, 546, 654, 655, 944
TspGWI ACGGA 1 cut(s) 450
TspRI CASTG 1 cut(s) 232
Vha464I CTTAAG 1 cut(s) 1135
XapI RAATTY 3 cut(s) 570, 642, 662
XceI RCATGY 1 cut(s) 904
XmiI GTMKAC 3 cut(s) 270, 496, 582
XspI CTAG 3 cut(s) 251, 428, 867
ZraI GACGTC 1 cut(s) 202
ZrmI AGTACT 1 cut(s) 1154
Zsp2I ATGCAT 1 cut(s) 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.