Prupe.3G165200_v2.0.a1

Eukaryotic initiation factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
18418997 .. 18422056
3060 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G165200.1

Sequence Viewer

Length: 1212 bp
ATGGCAGCAGAGACAGCAAGGAGACAGAGCGGCATGTTACGGCAGGAGAAGCTGGAGTTGGTGACGTCAGATGATATACAGCCAATCACGAGCTTTGATGAGATGGGGCTCAAAGACGACGTGCTCCGAGGCATCTACCAATACGGCTACGAGAAGCCCTCCGCCATCCAGCAACGGGCGGTGAGGCGCATCATCGACGGCCACGATGTGATAGCGCAGGCACAGTCGGGTACTGGCAAGACCTCCATGATTGCCCTCAGCGTTTGCCACATGGTGGACACCTCCTGCAGAGAGGTTCAGGCGTTGATATTGTGCCCTACGAGGGAATTGGCGGTACAGACTGAGAAGGTGATCTTAGCAGTTGGGAACTTCATAAACATACAATTGCATGCTTGCGTTGGAGGCAAAAGTGTGGGTGAGGATATCCGAAAGCTTGAGCATGGAGTTCATGTGGTTTGTGGAACTCCAGGTAGAGTCTTTGACATGATCAAGAGGAGAACTCTAAGCACTCGAGCCATTAAATTATTAGTTCTCGACGAGTCTGATGAGATGTTAAGCAGAGTATTCAAGGATCAGATTTACGACGTCTACCGATATCTTCCACCTGACCTCCAGGTTTGCTTAATTTCTGCTACACTTCCTCATGAAATCTTGGAGATGACCAACAAGTTTATGACTGAACCTGTAAGGATCCTTGTCAAACGTGATGAGTTGACTTTGGAGGGAATCAAGCAATTTTTCGTCTCCGTTGAAAGAGAAGAGTGGAAGTTTGATACGCTATGTGATCTCTATGATACTCTTACAATTACACAAGCTGTTATTTTCTGCAACACAAAGCGAAAGGTGGACTGGCTCACAGAGAAACTGCGGAGTAATAACTTTACGGTGTCTTCAATGCATGGAGACATGCCTCAGAAGGAGAGAGATGCTATCACCCAAGAGTTTCGCAGTGGCAATTCTCGCGTCCTCATCACGACAGATGTTTGGGCACGAGGTCTTGATGTTCAGCAGGTTTCCTTGGTTATCAATTTTGATCTTCCAAACAATCGAGAGCTGTATATTCATCGGATTGGTCGTTCTGGTCGTTTTGGGCGCAAGGGTGTGGCAATAAACTTCGTCAAAAGCGACGATATAAAGATCTTAAGAGACATTGAGCAGTACTACAGCACCCAGATTGACGAAATGCCTATGAACGTTGCAGATTTGATATGA

Protein Analysis

404

Amino Acids

46.0

Weight (kDa)

6.12

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 68, 588
Acc36I ACCTGC 1 cut(s) 1000
AccB7I CCANNNNNTGG 1 cut(s) 274
AccBSI CCGCTC 1 cut(s) 30
AccI GTMKAC 1 cut(s) 588
AccII CGCG 1 cut(s) 963
AciI CCGC 5 cut(s) 30, 162, 179, 332, 868
AclI AACGTT 1 cut(s) 1194
AclWI GGATC 3 cut(s) 579, 685, 698
AcoI YGGCCR 1 cut(s) 199
AcyI GRCGYC 2 cut(s) 65, 585
AdeI CACNNNGTG 2 cut(s) 208, 274
AfaI GTAC 3 cut(s) 232, 336, 1160
AfiI CCNNNNNNNGG 3 cut(s) 175, 274, 322
AflII CTTAAG 1 cut(s) 1141
AgsI TTSAA 3 cut(s) 568, 752, 894
AjiI CACGTC 1 cut(s) 121
AjnI CCWGG 2 cut(s) 466, 612
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AloI GAACNNNNNNTCC 2 cut(s) 1060, 1092
AluBI AGCT 5 cut(s) 52, 93, 433, 815, 1054
AluI AGCT 5 cut(s) 52, 93, 433, 815, 1054
Alw21I GWGCWC 1 cut(s) 126
Alw26I GTCTC 5 cut(s) 5, 16, 748, 897, 1140
AlwI GGATC 3 cut(s) 579, 685, 698
Ama87I CYCGRG 1 cut(s) 510
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 5
AspLEI GCGC 3 cut(s) 189, 217, 1095
AsuHPI GGTGA 5 cut(s) 73, 193, 361, 428, 925
AvaI CYCGRG 1 cut(s) 510
BaeGI GKGCMC 2 cut(s) 317, 991
BamHI GGATCC 1 cut(s) 690
BanII GRGCYC 1 cut(s) 111
BauI CACGAG 2 cut(s) 88, 990
BbsI GAAGAC 1 cut(s) 882
Bbv12I GWGCWC 1 cut(s) 126
BbvCI CCTCAGC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 97, 173
BceAI ACGGC 3 cut(s) 56, 160, 214
BciT130I CCWGG 2 cut(s) 468, 614
BclI TGATCA 1 cut(s) 486
BcoDI GTCTC 5 cut(s) 5, 16, 748, 897, 1140
BfmI CTRYAG 2 cut(s) 286, 1162
BfrI CTTAAG 1 cut(s) 1141
BfuAI ACCTGC 1 cut(s) 1000
BglII AGATCT 1 cut(s) 1137
BisI GCNGC 2 cut(s) 6, 31
BlsI GCNGC 2 cut(s) 7, 32
BmcAI AGTACT 1 cut(s) 1160
Bme1390I CCNGG 2 cut(s) 468, 614
BmeT110I CYCGRG 1 cut(s) 510
BmgBI CACGTC 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 692
BmrFI CCNGG 2 cut(s) 468, 614
BmsI GCATC 3 cut(s) 141, 198, 916
BpiI GAAGAC 1 cut(s) 882
BplI GAGNNNNNCTC 4 cut(s) 143, 175, 484, 516
BpmI CTGGAG 3 cut(s) 74, 450, 596
Bpu10I CCTNAGC 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 455
BsaHI GRCGYC 2 cut(s) 65, 585
BsaJI CCNNGG 2 cut(s) 127, 1017
BsaXI ACNNNNNCTCC 4 cut(s) 435, 465, 594, 624
Bsc4I CCNNNNNNNGG 3 cut(s) 175, 274, 322
Bse1I ACTGG 2 cut(s) 238, 854
BseBI CCWGG 2 cut(s) 468, 614
BseDI CCNNGG 2 cut(s) 127, 1017
BseGI GGATG 1 cut(s) 165
BseLI CCNNNNNNNGG 3 cut(s) 175, 274, 322
BseMII CTCAG 3 cut(s) 271, 333, 926
BseNI ACTGG 2 cut(s) 238, 854
BseRI GAGGAG 1 cut(s) 508
BseSI GKGCMC 2 cut(s) 317, 991
BseXI GCAGC 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 963
BshFI GGCC 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 126
BsiHKCI CYCGRG 1 cut(s) 510
BslI CCNNNNNNNGG 3 cut(s) 175, 274, 322
BsmAI GTCTC 5 cut(s) 5, 16, 748, 897, 1140
BsmBI CGTCTC 1 cut(s) 748
BsnI GGCC 1 cut(s) 201
BsoBI CYCGRG 1 cut(s) 510
Bsp1286I GDGCHC 4 cut(s) 111, 126, 317, 991
Bsp143I GATC 7 cut(s) 351, 486, 571, 690, 784, 1033, 1137
BspACI CCGC 5 cut(s) 30, 162, 179, 332, 868
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 3 cut(s) 270, 334, 925
BspFNI CGCG 1 cut(s) 963
BspHI TCATGA 1 cut(s) 643
BspLI GGNNCC 1 cut(s) 692
BspMAI CTGCAG 1 cut(s) 290
BspMI ACCTGC 1 cut(s) 1000
BspPI GGATC 3 cut(s) 579, 685, 698
BspTI CTTAAG 1 cut(s) 1141
BsrBI CCGCTC 1 cut(s) 30
BsrI ACTGG 2 cut(s) 238, 854
BssECI CCNNGG 2 cut(s) 127, 1017
BssMI GATC 7 cut(s) 351, 486, 571, 690, 784, 1033, 1137
BssNI GRCGYC 2 cut(s) 65, 585
BssSI CACGAG 2 cut(s) 88, 990
BssT1I CCWWGG 1 cut(s) 1017
Bst2BI CACGAG 2 cut(s) 88, 990
Bst2UI CCWGG 2 cut(s) 468, 614
Bst4CI ACNGT 2 cut(s) 225, 886
Bst6I CTCTTC 1 cut(s) 753
BstACI GRCGYC 2 cut(s) 65, 585
BstAFI CTTAAG 1 cut(s) 1141
BstC8I GCNNGC 3 cut(s) 219, 390, 394
BstDEI CTNAG 5 cut(s) 257, 342, 355, 503, 912
BstF5I GGATG 1 cut(s) 165
BstFNI CGCG 1 cut(s) 963
BstHHI GCGC 3 cut(s) 189, 217, 1095
BstKTI GATC 7 cut(s) 354, 489, 574, 693, 787, 1036, 1140
BstMAI GTCTC 5 cut(s) 5, 16, 748, 897, 1140
BstMBI GATC 7 cut(s) 351, 486, 571, 690, 784, 1033, 1137
BstMWI GCNNNNNNNGC 4 cut(s) 14, 49, 402, 960
BstNI CCWGG 2 cut(s) 468, 614
BstNSI RCATGY 3 cut(s) 37, 392, 910
BstSCI CCNGG 2 cut(s) 466, 612
BstSFI CTRYAG 2 cut(s) 286, 1162
BstSLI GKGCMC 2 cut(s) 317, 991
BstUI CGCG 1 cut(s) 963
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 882
BstX2I RGATCY 2 cut(s) 690, 1137
BstYI RGATCY 2 cut(s) 690, 1137
BsuRI GGCC 1 cut(s) 201
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 1 cut(s) 165
BtsI GCAGTG 1 cut(s) 955
BtsIMutI CAGTG 1 cut(s) 955
BveI ACCTGC 1 cut(s) 1000
Cac8I GCNNGC 3 cut(s) 219, 390, 394
CciI TCATGA 1 cut(s) 643
CfoI GCGC 3 cut(s) 189, 217, 1095
CseI GACGC 1 cut(s) 952
Csp6I GTAC 3 cut(s) 231, 335, 1159
CviQI GTAC 3 cut(s) 231, 335, 1159
DdeI CTNAG 5 cut(s) 257, 342, 355, 503, 912
DpnI GATC 7 cut(s) 353, 488, 573, 692, 786, 1035, 1139
DpnII GATC 7 cut(s) 351, 486, 571, 690, 784, 1033, 1137
DraIII CACNNNGTG 2 cut(s) 208, 274
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 753
EarI CTCTTC 1 cut(s) 753
EciI GGCGGA 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 1017
Eco24I GRGCYC 1 cut(s) 111
Eco32I GATATC 2 cut(s) 424, 596
Eco88I CYCGRG 1 cut(s) 510
EcoRII CCWGG 2 cut(s) 466, 612
EcoRV GATATC 2 cut(s) 424, 596
EcoT14I CCWWGG 1 cut(s) 1017
EcoT22I ATGCAT 1 cut(s) 900
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 1017
Esp3I CGTCTC 1 cut(s) 748
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FbaI TGATCA 1 cut(s) 486
FblI GTMKAC 1 cut(s) 588
Fnu4HI GCNGC 2 cut(s) 6, 31
FokI GGATG 1 cut(s) 152
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 2 cut(s) 6, 31
GlaI GCGC 3 cut(s) 188, 216, 1094
GluI GCNGC 2 cut(s) 6, 31
GsuI CTGGAG 3 cut(s) 74, 450, 596
HaeIII GGCC 1 cut(s) 201
HgaI GACGC 1 cut(s) 952
HhaI GCGC 3 cut(s) 189, 217, 1095
Hin1I GRCGYC 2 cut(s) 65, 585
Hin6I GCGC 3 cut(s) 187, 215, 1093
HinP1I GCGC 3 cut(s) 187, 215, 1093
HincII GTYRAC 1 cut(s) 714
HindII GTYRAC 1 cut(s) 714
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 3 cut(s) 474, 539, 726
HphI GGTGA 5 cut(s) 73, 193, 361, 428, 925
Hpy166II GTNNAC 4 cut(s) 277, 589, 714, 847
Hpy188I TCNGA 7 cut(s) 70, 128, 428, 544, 576, 915, 1068
Hpy188III TCNNGA 7 cut(s) 88, 490, 533, 644, 973, 998, 1049
Hpy8I GTNNAC 4 cut(s) 277, 589, 714, 847
Hpy99I CGWCG 5 cut(s) 122, 200, 539, 587, 1130
HpyAV CCTTC 2 cut(s) 340, 910
HpyCH4III ACNGT 2 cut(s) 225, 886
HpyCH4IV ACGT 5 cut(s) 65, 120, 585, 703, 1194
HpyCH4V TGCA 5 cut(s) 288, 388, 828, 898, 1199
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 49, 402, 960
HpyF3I CTNAG 5 cut(s) 257, 342, 355, 503, 912
HpySE526I ACGT 5 cut(s) 65, 120, 585, 703, 1194
Hsp92I GRCGYC 2 cut(s) 65, 585
HspAI GCGC 3 cut(s) 187, 215, 1093
Ksp22I TGATCA 1 cut(s) 486
Kzo9I GATC 7 cut(s) 351, 486, 571, 690, 784, 1033, 1137
LmnI GCTCC 1 cut(s) 129
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 3 cut(s) 141, 198, 916
MaeII ACGT 5 cut(s) 65, 120, 585, 703, 1194
MaeIII GTNAC 2 cut(s) 36, 61
MalI GATC 7 cut(s) 353, 488, 573, 692, 786, 1035, 1139
MbiI CCGCTC 1 cut(s) 30
MboI GATC 7 cut(s) 351, 486, 571, 690, 784, 1033, 1137
MboII GAAGA 4 cut(s) 590, 770, 882, 1028
MfeI CAATTG 1 cut(s) 383
MflI RGATCY 2 cut(s) 690, 1137
MhlI GDGCHC 4 cut(s) 111, 126, 317, 991
MluCI AATT 8 cut(s) 326, 383, 521, 624, 734, 804, 955, 1027
MlyI GAGTC 2 cut(s) 483, 548
MmeI TCCRAC 1 cut(s) 379
Mph1103I ATGCAT 1 cut(s) 900
MseI TTAA 4 cut(s) 519, 554, 623, 1142
MspCI CTTAAG 1 cut(s) 1141
MspR9I CCNGG 2 cut(s) 468, 614
MunI CAATTG 1 cut(s) 383
MvaI CCWGG 2 cut(s) 468, 614
MvnI CGCG 1 cut(s) 963
MwoI GCNNNNNNNGC 4 cut(s) 14, 49, 402, 960
NdeII GATC 7 cut(s) 351, 486, 571, 690, 784, 1033, 1137
NlaIV GGNNCC 1 cut(s) 692
NmuCI GTSAC 1 cut(s) 61
NsiI ATGCAT 1 cut(s) 900
NspI RCATGY 3 cut(s) 37, 392, 910
PaeI GCATGC 1 cut(s) 392
PaeR7I CTCGAG 1 cut(s) 510
PagI TCATGA 1 cut(s) 643
PcsI WCGNNNNNNNCGW 4 cut(s) 201, 1072, 1081, 1122
PfeI GAWTC 1 cut(s) 726
PflMI CCANNNNNTGG 1 cut(s) 274
PkrI GCNGC 2 cut(s) 7, 32
PleI GAGTC 2 cut(s) 482, 547
PpsI GAGTC 2 cut(s) 482, 547
Psp1406I AACGTT 1 cut(s) 1194
Psp6I CCWGG 2 cut(s) 466, 612
PspGI CCWGG 2 cut(s) 466, 612
PspN4I GGNNCC 1 cut(s) 692
PspXI VCTCGAGB 1 cut(s) 510
PstI CTGCAG 1 cut(s) 290
PsuI RGATCY 2 cut(s) 690, 1137
RsaI GTAC 3 cut(s) 232, 336, 1160
RsaNI GTAC 3 cut(s) 231, 335, 1159
SaqAI TTAA 4 cut(s) 519, 554, 623, 1142
SatI GCNGC 2 cut(s) 6, 31
Sau3AI GATC 7 cut(s) 351, 486, 571, 690, 784, 1033, 1137
ScaI AGTACT 1 cut(s) 1160
SchI GAGTC 2 cut(s) 483, 548
ScrFI CCNGG 2 cut(s) 468, 614
SduI GDGCHC 4 cut(s) 111, 126, 317, 991
SfaNI GCATC 3 cut(s) 141, 198, 916
SfcI CTRYAG 2 cut(s) 286, 1162
Sfr274I CTCGAG 1 cut(s) 510
SlaI CTCGAG 1 cut(s) 510
SmlI CTYRAG 3 cut(s) 434, 510, 1141
SmoI CTYRAG 3 cut(s) 434, 510, 1141
SphI GCATGC 1 cut(s) 392
Sse9I AATT 8 cut(s) 326, 383, 521, 624, 734, 804, 955, 1027
SsiI CCGC 5 cut(s) 30, 162, 179, 332, 868
StyD4I CCNGG 2 cut(s) 466, 612
StyI CCWWGG 1 cut(s) 1017
TaaI ACNGT 2 cut(s) 225, 886
TaiI ACGT 5 cut(s) 68, 123, 588, 706, 1197
TaqI TCGA 4 cut(s) 195, 511, 534, 1048
TasI AATT 8 cut(s) 326, 383, 521, 624, 734, 804, 955, 1027
TatI WGTACW 1 cut(s) 1158
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 1 cut(s) 726
Tru1I TTAA 4 cut(s) 519, 554, 623, 1142
Tru9I TTAA 4 cut(s) 519, 554, 623, 1142
TscAI CASTG 1 cut(s) 955
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 5 cut(s) 361, 437, 660, 1052, 1205
TspGWI ACGGA 1 cut(s) 736
TspRI CASTG 1 cut(s) 955
Van91I CCANNNNNTGG 1 cut(s) 274
Vha464I CTTAAG 1 cut(s) 1141
XceI RCATGY 3 cut(s) 37, 392, 910
XhoI CTCGAG 1 cut(s) 510
XmiI GTMKAC 1 cut(s) 588
ZraI GACGTC 2 cut(s) 66, 586
ZrmI AGTACT 1 cut(s) 1160
Zsp2I ATGCAT 1 cut(s) 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.