Rh2DG640400

Helicase conserved C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000818
Physical Location & Seq
Reverse (-)
86809986 .. 86810336
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG640400.1

Sequence Viewer

Length: 351 bp
ATGCGGACTAGTAACTTTTCTGTGTCTGCAATGCATGGAGACATGCCTCAGAAGGAGCGAGCTGATGCTATTATGAAAGAGTTTCAGAAAGGTCTTTCACGAGTCCTCATCACAACTGATGTTTGGGCTCGGGGCATCGATGTTCAGCAGGTTTCGCTGGTTATCAACTATGATCTTCCAAATAATCGAGAGCTATACATACATAGGATTGGTCGTTCGGGTCGGTTTGGACGAAGGGGTGTGGCAATAAACTTTGTCAAGAAAGATGATATCAGGATCCTAAGAGACACTGAACAGTACTACAGTACACAGATTGACGAGATGCCCATGAATGTGGCTGATTTACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000184 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0000578 GO:0000956 GO:0001501 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003727 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006406 GO:0006417 GO:0006448 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007028 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007308 GO:0007309 GO:0007314 GO:0007315 GO:0007316 GO:0007350 GO:0007351 GO:0007389 GO:0007610 GO:0007611 GO:0007612 GO:0008026 GO:0008104 GO:0008143 GO:0008144 GO:0008150 GO:0008152 GO:0008186 GO:0008298 GO:0008306 GO:0008358 GO:0008380 GO:0008595 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009790 GO:0009792 GO:0009798 GO:0009880 GO:0009887 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009948 GO:0009952 GO:0009966 GO:0009968 GO:0009987 GO:0009994 GO:0010033 GO:0010035 GO:0010467 GO:0010468 GO:0010501 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0017148 GO:0019094 GO:0019219 GO:0019222 GO:0019439 GO:0019953 GO:0021700 GO:0022412 GO:0022414 GO:0022607 GO:0023051 GO:0023057 GO:0030154 GO:0030425 GO:0030554 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031503 GO:0031644 GO:0031645 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033120 GO:0034248 GO:0034249 GO:0034250 GO:0034613 GO:0034641 GO:0034655 GO:0035145 GO:0035282 GO:0035368 GO:0035613 GO:0035639 GO:0035640 GO:0036094 GO:0036477 GO:0042221 GO:0042391 GO:0042623 GO:0042886 GO:0042995 GO:0043005 GO:0043009 GO:0043021 GO:0043025 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044057 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044703 GO:0044877 GO:0045184 GO:0045451 GO:0045495 GO:0045727 GO:0045893 GO:0045900 GO:0045935 GO:0045944 GO:0046483 GO:0046700 GO:0046907 GO:0048024 GO:0048026 GO:0048468 GO:0048469 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048562 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048599 GO:0048609 GO:0048701 GO:0048704 GO:0048705 GO:0048706 GO:0048731 GO:0048856 GO:0048869 GO:0050657 GO:0050658 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050804 GO:0050805 GO:0050877 GO:0050890 GO:0050896 GO:0051028 GO:0051098 GO:0051100 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051276 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0060810 GO:0060811 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070035 GO:0070717 GO:0070727 GO:0070848 GO:0070887 GO:0071013 GO:0071166 GO:0071241 GO:0071310 GO:0071363 GO:0071426 GO:0071427 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072714 GO:0072715 GO:0080090 GO:0090304 GO:0090394 GO:0097159 GO:0097367 GO:0097447 GO:0097458 GO:0098815 GO:0099177 GO:0120025 GO:0120038 GO:0140098 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902415 GO:1902494 GO:1902680 GO:1903040 GO:1903311 GO:1903313 GO:1903506 GO:1903508 GO:1904569 GO:1904570 GO:1904572 GO:1904573 GO:1904574 GO:1904888 GO:1905214 GO:1905215 GO:1990089 GO:1990090 GO:1990416 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03040 map03013 map03015 map03040
Pfam Domains
Protein Families
DEAD Helicase_C

Protein Analysis

116

Amino Acids

13.43

Weight (kDa)

9.09

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Helicase_C PF00271 4 - 77 7.9e-26 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 139
AciI CCGC 1 cut(s) 4
AclWI GGATC 2 cut(s) 271, 284
AfaI GTAC 2 cut(s) 299, 307
AhlI ACTAGT 1 cut(s) 8
AloI GAACNNNNNNTCC 2 cut(s) 199, 231
AluBI AGCT 2 cut(s) 62, 193
AluI AGCT 2 cut(s) 62, 193
Alw26I GTCTC 2 cut(s) 33, 279
AlwI GGATC 2 cut(s) 271, 284
Ama87I CYCGRG 1 cut(s) 129
AvaI CYCGRG 1 cut(s) 129
BamHI GGATCC 1 cut(s) 276
BanII GRGCYC 1 cut(s) 130
BauI CACGAG 1 cut(s) 99
BcoDI GTCTC 2 cut(s) 33, 279
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 301
BfuAI ACCTGC 1 cut(s) 139
BmcAI AGTACT 1 cut(s) 299
BmeT110I CYCGRG 1 cut(s) 129
BmiI GGNNCC 1 cut(s) 278
BmsI GCATC 3 cut(s) 55, 144, 312
Bsa29I ATCGAT 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 36
BseCI ATCGAT 1 cut(s) 138
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 62
BshVI ATCGAT 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 129
BsmAI GTCTC 2 cut(s) 33, 279
BsoBI CYCGRG 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 2 cut(s) 172, 276
BspACI CCGC 1 cut(s) 4
BspCNI CTCAG 1 cut(s) 61
BspDI ATCGAT 1 cut(s) 138
BspLI GGNNCC 1 cut(s) 278
BspMI ACCTGC 1 cut(s) 139
BspPI GGATC 2 cut(s) 271, 284
BsrDI GCAATG 1 cut(s) 36
BssMI GATC 2 cut(s) 172, 276
BssSI CACGAG 1 cut(s) 99
Bst2BI CACGAG 1 cut(s) 99
Bst4CI ACNGT 2 cut(s) 297, 305
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 2 cut(s) 48, 281
BstKTI GATC 2 cut(s) 175, 279
BstMAI GTCTC 2 cut(s) 33, 279
BstMBI GATC 2 cut(s) 172, 276
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstNSI RCATGY 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 276
BstXI CCANNNNNNTGG 1 cut(s) 334
BstYI RGATCY 1 cut(s) 276
Bsu15I ATCGAT 1 cut(s) 138
BsuTUI ATCGAT 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 288
BveI ACCTGC 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 60
ClaI ATCGAT 1 cut(s) 138
Csp6I GTAC 2 cut(s) 298, 306
CviAII CATG 3 cut(s) 35, 43, 328
CviJI RGCY 4 cut(s) 62, 128, 193, 338
CviKI_1 RGCY 4 cut(s) 62, 128, 193, 338
CviQI GTAC 2 cut(s) 298, 306
DdeI CTNAG 2 cut(s) 48, 281
DpnI GATC 2 cut(s) 174, 278
DpnII GATC 2 cut(s) 172, 276
Eco24I GRGCYC 1 cut(s) 130
Eco32I GATATC 1 cut(s) 271
Eco88I CYCGRG 1 cut(s) 129
EcoRV GATATC 1 cut(s) 271
EcoT22I ATGCAT 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 130
FaeI CATG 3 cut(s) 38, 46, 331
FaiI YATR 9 cut(s) 36, 44, 74, 171, 196, 200, 204, 329, 349
FatI CATG 3 cut(s) 34, 42, 327
FriOI GRGCYC 1 cut(s) 130
FspBI CTAG 1 cut(s) 9
Hin1II CATG 3 cut(s) 38, 46, 331
HinfI GANTC 1 cut(s) 102
Hpy166II GTNNAC 1 cut(s) 308
Hpy188I TCNGA 2 cut(s) 51, 87
Hpy188III TCNNGA 4 cut(s) 99, 188, 259, 274
Hpy8I GTNNAC 1 cut(s) 308
HpyAV CCTTC 2 cut(s) 46, 228
HpyCH4III ACNGT 2 cut(s) 297, 305
HpyCH4V TGCA 2 cut(s) 29, 34
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 2 cut(s) 48, 281
Hsp92II CATG 3 cut(s) 38, 46, 331
Kzo9I GATC 2 cut(s) 172, 276
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 3 cut(s) 134, 143, 259
LweI GCATC 3 cut(s) 55, 144, 312
MaeI CTAG 1 cut(s) 9
MaeIII GTNAC 1 cut(s) 11
MalI GATC 2 cut(s) 174, 278
MboI GATC 2 cut(s) 172, 276
MboII GAAGA 1 cut(s) 167
MflI RGATCY 1 cut(s) 276
MhlI GDGCHC 1 cut(s) 130
MlyI GAGTC 1 cut(s) 111
MnlI CCTC 2 cut(s) 57, 116
Mph1103I ATGCAT 1 cut(s) 36
MslI CAYNNNNRTG 1 cut(s) 332
MwoI GCNNNNNNNGC 1 cut(s) 154
NdeII GATC 2 cut(s) 172, 276
NlaIII CATG 3 cut(s) 38, 46, 331
NlaIV GGNNCC 1 cut(s) 278
NsiI ATGCAT 1 cut(s) 36
NspI RCATGY 1 cut(s) 46
PcsI WCGNNNNNNNCGW 1 cut(s) 229
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
PspN4I GGNNCC 1 cut(s) 278
PsuI RGATCY 1 cut(s) 276
RsaI GTAC 2 cut(s) 299, 307
RsaNI GTAC 2 cut(s) 298, 306
RseI CAYNNNNRTG 1 cut(s) 332
Sau3AI GATC 2 cut(s) 172, 276
ScaI AGTACT 1 cut(s) 299
SchI GAGTC 1 cut(s) 111
SduI GDGCHC 1 cut(s) 130
SetI ASST 4 cut(s) 64, 94, 153, 195
SfaNI GCATC 3 cut(s) 55, 144, 312
SfcI CTRYAG 1 cut(s) 301
SmiMI CAYNNNNRTG 1 cut(s) 332
SpeI ACTAGT 1 cut(s) 8
SsiI CCGC 1 cut(s) 4
SspMI CTAG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 297, 305
TaqI TCGA 2 cut(s) 138, 187
TatI WGTACW 2 cut(s) 297, 305
TscAI CASTG 1 cut(s) 295
TspDTI ATGAA 2 cut(s) 89, 344
TspRI CASTG 1 cut(s) 295
XceI RCATGY 1 cut(s) 46
XspI CTAG 1 cut(s) 9
ZrmI AGTACT 1 cut(s) 299
Zsp2I ATGCAT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.