RLG00000010175

Eukaryotic initiation factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
63874213 .. 63875778
1566 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010175

Sequence Viewer

Length: 1128 bp
ATGGCAGCAACCGCAACCTCCAGGGCAAGCCAAACGATACGGGGTGTCAAAAACACCGTAGAGGAGAAGCTCAAGTTTGTGACCTCGGAATCTGAAGGTATAGAGCCGATAATGAGCTTCGACGATATGTGCCTTAAAGAAGAGCTCCTCCGAGGCATCTACAACCATGGCTTTGAGAAGCCCTCAGCTATCCAGCAACGGGCCATCAGACCCATTATTGAGCGCAGGGATGTTATCGCCCAGGCGCAGTCCGGTACTGGAAAGACATCAATGATTGCACTCGCCGCTTGCCAAATGGTTGACACCGCCTCCAGAGAGGTTCAGGCATTGATCCTTTCTCCAACGAGGGAATTGGCGGCCCAGACAGAGAAAGTGATATTGGCAATTGGAAATTACCTAAATATTCAAGTACATTCATGCATAGGAGGCAAAAGCTTGGGTGAAGATATCAGAAGGCTAGAGAACGGAGTTCATGTGGTGTCTGGAACTCCCGGTAGAGTCTGTGACATGCTCGACAGGAAAACTCTACGTCCTCGACAAATTAAATTATTAATTCTCGATGAATCTGATGAAATGTTGAGCAGAGGCTTCAAGGATCAGATTTACAACGTCTACCGCTATCTTTCGCATGAAGTCCAAGGAATCAAGCAATTTTTTGTTTCAGTTGAAAGAGAAGATTGGAAGTTTGATACTCTCTGTGATCTCTATGATACCCTTACGATTACACAAGCTGTTGTTTTCTGCAACACAAAGCGAAAGGTCGATTGGCTCGGCGAAAAGTTGCGGAGCAATAACTTCACTGTGTCTTCAATGCATGGAGACATGCCTCAGAAAGAGAGAGATGCTATAATGAAAGACTTTAAGAACAGTGAATCACGAATCCTCATCACAACAGATGTTTGGGCTCGAGGCATCGATGTTCAACACGTTTCGTTGGTTATCAACTATGATCTTCCAAACAATCGAGAGCTGTACATTCATAGAATTGGTCGTTCGGGTCGTTTTGGACGCAAGGGTGTGGCAATCAACTTTGTCAAGAACGATGATATTAGGATTTTAAGAGACATTGAACAGTACTACAGTACCCAGATTGATGAGATGCCCATGAATGTGGCTGATTTAATATGA

Protein Analysis

376

Amino Acids

42.7

Weight (kDa)

7.05

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 61 - 190 3.4e-06 Type III restriction enzyme, res subunit
DEAD PF00270 63 - 209 2.7e-38 DEAD/DEAH box helicase
Helicase_C PF00271 228 - 336 2.8e-35 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 612
AciI CCGC 6 cut(s) 12, 285, 306, 356, 616, 784
AclWI GGATC 2 cut(s) 325, 603
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 5 cut(s) 256, 411, 974, 1076, 1084
AfiI CCNNNNNNNGG 1 cut(s) 199
AflIII ACRYGT 1 cut(s) 925
AgsI TTSAA 6 cut(s) 407, 592, 668, 810, 923, 1070
AjnI CCWGG 2 cut(s) 20, 240
AjuI GAANNNNNNNTTGG 4 cut(s) 362, 394, 748, 780
AluBI AGCT 7 cut(s) 70, 117, 145, 188, 435, 731, 970
AluI AGCT 7 cut(s) 70, 117, 145, 188, 435, 731, 970
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 2 cut(s) 813, 1056
AlwI GGATC 2 cut(s) 325, 603
Ama87I CYCGRG 1 cut(s) 906
AoxI GGCC 2 cut(s) 201, 357
ApeKI GCWGC 1 cut(s) 5
AseI ATTAAT 1 cut(s) 551
AspLEI GCGC 2 cut(s) 225, 247
AspS9I GGNCC 2 cut(s) 201, 358
AsuC2I CCSGG 1 cut(s) 492
AsuHPI GGTGA 1 cut(s) 452
AvaI CYCGRG 1 cut(s) 906
BaeI ACNNNNGTAYC 2 cut(s) 1066, 1099
BanII GRGCYC 2 cut(s) 147, 907
BbsI GAAGAC 1 cut(s) 798
Bbv12I GWGCWC 1 cut(s) 147
BbvCI CCTCAGC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 212
BciT130I CCWGG 2 cut(s) 22, 242
BcnI CCSGG 1 cut(s) 492
BcoDI GTCTC 2 cut(s) 813, 1056
BfaI CTAG 1 cut(s) 458
BfmI CTRYAG 1 cut(s) 1078
BisI GCNGC 3 cut(s) 6, 285, 357
BlsI GCNGC 3 cut(s) 7, 286, 358
BmcAI AGTACT 1 cut(s) 1076
Bme1390I CCNGG 3 cut(s) 22, 242, 492
BmeT110I CYCGRG 1 cut(s) 906
BmgT120I GGNCC 2 cut(s) 201, 358
BmrFI CCNGG 3 cut(s) 22, 242, 492
BmsI GCATC 4 cut(s) 165, 832, 921, 1089
BpiI GAAGAC 1 cut(s) 798
BplI GAGNNNNNCTC 2 cut(s) 167, 199
BpmI CTGGAG 2 cut(s) 4, 295
Bpu10I CCTNAGC 1 cut(s) 184
BpuEI CTTGAG 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 492
Bsa29I ATCGAT 1 cut(s) 915
BsaJI CCNNGG 6 cut(s) 21, 84, 151, 166, 240, 637
BsaWI WCCGGW 1 cut(s) 251
BsaXI ACNNNNNCTCC 4 cut(s) 293, 323, 459, 489
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 1 cut(s) 262
BseBI CCWGG 2 cut(s) 22, 242
BseCI ATCGAT 1 cut(s) 915
BseDI CCNNGG 6 cut(s) 21, 84, 151, 166, 240, 637
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMII CTCAG 2 cut(s) 198, 842
BseNI ACTGG 1 cut(s) 262
BseRI GAGGAG 2 cut(s) 77, 137
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 2 cut(s) 203, 359
BshVI ATCGAT 1 cut(s) 915
BsiHKAI GWGCWC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 906
BsiSI CCGG 2 cut(s) 252, 492
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 2 cut(s) 813, 1056
BsnI GGCC 2 cut(s) 203, 359
BsoBI CYCGRG 1 cut(s) 906
Bsp1286I GDGCHC 2 cut(s) 147, 907
Bsp1407I TGTACA 1 cut(s) 972
Bsp143I GATC 4 cut(s) 330, 595, 700, 949
Bsp19I CCATGG 1 cut(s) 166
BspACI CCGC 6 cut(s) 12, 285, 306, 356, 616, 784
BspANI GGCC 2 cut(s) 203, 359
BspCNI CTCAG 2 cut(s) 197, 841
BspDI ATCGAT 1 cut(s) 915
BspPI GGATC 2 cut(s) 325, 603
BspQI GCTCTTC 1 cut(s) 135
BsrGI TGTACA 1 cut(s) 972
BsrI ACTGG 1 cut(s) 262
BssECI CCNNGG 6 cut(s) 21, 84, 151, 166, 240, 637
BssMI GATC 4 cut(s) 330, 595, 700, 949
BssT1I CCWWGG 2 cut(s) 166, 637
Bst2UI CCWGG 2 cut(s) 22, 242
Bst4CI ACNGT 5 cut(s) 58, 802, 869, 1074, 1082
Bst6I CTCTTC 1 cut(s) 135
BstAUI TGTACA 1 cut(s) 972
BstC8I GCNNGC 2 cut(s) 28, 289
BstDEI CTNAG 2 cut(s) 184, 828
BstDSI CCRYGG 1 cut(s) 166
BstF5I GGATG 1 cut(s) 235
BstHHI GCGC 2 cut(s) 225, 247
BstKTI GATC 4 cut(s) 333, 598, 703, 952
BstMAI GTCTC 2 cut(s) 813, 1056
BstMBI GATC 4 cut(s) 330, 595, 700, 949
BstMWI GCNNNNNNNGC 3 cut(s) 11, 284, 426
BstNI CCWGG 2 cut(s) 22, 242
BstNSI RCATGY 2 cut(s) 511, 826
BstSCI CCNGG 3 cut(s) 20, 240, 490
BstSFI CTRYAG 1 cut(s) 1078
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 798
BstXI CCANNNNNNTGG 1 cut(s) 1111
Bsu15I ATCGAT 1 cut(s) 915
BsuRI GGCC 2 cut(s) 203, 359
BsuTUI ATCGAT 1 cut(s) 915
BtgI CCRYGG 1 cut(s) 166
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 2 cut(s) 798, 874
Cac8I GCNNGC 2 cut(s) 28, 289
CfoI GCGC 2 cut(s) 225, 247
Cfr13I GGNCC 2 cut(s) 201, 358
ClaI ATCGAT 1 cut(s) 915
CseI GACGC 1 cut(s) 1017
Csp6I GTAC 5 cut(s) 255, 410, 973, 1075, 1083
CviAII CATG 8 cut(s) 167, 417, 473, 508, 629, 815, 823, 1105
CviQI GTAC 5 cut(s) 255, 410, 973, 1075, 1083
DdeI CTNAG 2 cut(s) 184, 828
DpnI GATC 4 cut(s) 332, 597, 702, 951
DpnII GATC 4 cut(s) 330, 595, 700, 949
Eam1104I CTCTTC 1 cut(s) 135
EarI CTCTTC 1 cut(s) 135
Ecl136II GAGCTC 1 cut(s) 145
Eco130I CCWWGG 2 cut(s) 166, 637
Eco24I GRGCYC 2 cut(s) 147, 907
Eco32I GATATC 1 cut(s) 448
Eco53kI GAGCTC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 906
EcoICRI GAGCTC 1 cut(s) 145
EcoRII CCWGG 2 cut(s) 20, 240
EcoRV GATATC 1 cut(s) 448
EcoT14I CCWWGG 2 cut(s) 166, 637
EcoT22I ATGCAT 2 cut(s) 422, 816
EcoT38I GRGCYC 2 cut(s) 147, 907
ErhI CCWWGG 2 cut(s) 166, 637
FaeI CATG 8 cut(s) 170, 420, 476, 511, 632, 818, 826, 1108
FatI CATG 8 cut(s) 166, 416, 472, 507, 628, 814, 822, 1104
FblI GTMKAC 1 cut(s) 612
Fnu4HI GCNGC 3 cut(s) 6, 285, 357
FokI GGATG 1 cut(s) 242
FriOI GRGCYC 2 cut(s) 147, 907
Fsp4HI GCNGC 3 cut(s) 6, 285, 357
FspBI CTAG 1 cut(s) 458
GlaI GCGC 2 cut(s) 224, 246
GluI GCNGC 3 cut(s) 6, 285, 357
GsuI CTGGAG 2 cut(s) 4, 295
HaeIII GGCC 2 cut(s) 203, 359
HapII CCGG 2 cut(s) 252, 492
HgaI GACGC 1 cut(s) 1017
HhaI GCGC 2 cut(s) 225, 247
Hin1II CATG 8 cut(s) 170, 420, 476, 511, 632, 818, 826, 1108
Hin6I GCGC 2 cut(s) 223, 245
HinP1I GCGC 2 cut(s) 223, 245
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HindIII AAGCTT 1 cut(s) 433
HinfI GANTC 6 cut(s) 89, 498, 563, 642, 872, 879
HpaII CCGG 2 cut(s) 252, 492
HphI GGTGA 1 cut(s) 452
Hpy166II GTNNAC 2 cut(s) 301, 613
Hpy188I TCNGA 8 cut(s) 88, 94, 152, 209, 452, 568, 600, 831
Hpy188III TCNNGA 6 cut(s) 312, 483, 557, 876, 965, 1036
Hpy8I GTNNAC 2 cut(s) 301, 613
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 2 cut(s) 89, 447
HpyCH4III ACNGT 5 cut(s) 58, 802, 869, 1074, 1082
HpyCH4IV ACGT 3 cut(s) 529, 609, 927
HpyCH4V TGCA 4 cut(s) 278, 420, 744, 814
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 284, 426
HpyF3I CTNAG 2 cut(s) 184, 828
HpySE526I ACGT 3 cut(s) 529, 609, 927
Hsp92II CATG 8 cut(s) 170, 420, 476, 511, 632, 818, 826, 1108
HspAI GCGC 2 cut(s) 223, 245
Kzo9I GATC 4 cut(s) 330, 595, 700, 949
LguI GCTCTTC 1 cut(s) 135
LmnI GCTCC 2 cut(s) 150, 786
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 4 cut(s) 165, 832, 921, 1089
MaeI CTAG 1 cut(s) 458
MaeII ACGT 3 cut(s) 529, 609, 927
MaeIII GTNAC 2 cut(s) 79, 503
MalI GATC 4 cut(s) 332, 597, 702, 951
MboI GATC 4 cut(s) 330, 595, 700, 949
MboII GAAGA 5 cut(s) 152, 455, 686, 798, 944
MfeI CAATTG 1 cut(s) 384
MhlI GDGCHC 2 cut(s) 147, 907
MluCI AATT 8 cut(s) 350, 384, 391, 540, 545, 552, 650, 984
MlyI GAGTC 1 cut(s) 507
MmeI TCCRAC 1 cut(s) 365
Mph1103I ATGCAT 2 cut(s) 422, 816
MseI TTAA 6 cut(s) 135, 543, 551, 861, 1058, 1121
MslI CAYNNNNRTG 1 cut(s) 1109
MspI CCGG 2 cut(s) 252, 492
MspR9I CCNGG 3 cut(s) 22, 242, 492
MunI CAATTG 1 cut(s) 384
MvaI CCWGG 2 cut(s) 22, 242
MwoI GCNNNNNNNGC 3 cut(s) 11, 284, 426
NciI CCSGG 1 cut(s) 492
NcoI CCATGG 1 cut(s) 166
NdeII GATC 4 cut(s) 330, 595, 700, 949
NlaIII CATG 8 cut(s) 170, 420, 476, 511, 632, 818, 826, 1108
NmeAIII GCCGAG 1 cut(s) 750
NmuCI GTSAC 2 cut(s) 79, 503
NsiI ATGCAT 2 cut(s) 422, 816
NspI RCATGY 2 cut(s) 511, 826
PaeR7I CTCGAG 1 cut(s) 906
PciSI GCTCTTC 1 cut(s) 135
PcsI WCGNNNNNNNCGW 1 cut(s) 997
PfeI GAWTC 5 cut(s) 89, 563, 642, 872, 879
PkrI GCNGC 3 cut(s) 7, 286, 358
PleI GAGTC 1 cut(s) 506
PpsI GAGTC 1 cut(s) 506
PshBI ATTAAT 1 cut(s) 551
Psp124BI GAGCTC 1 cut(s) 147
Psp6I CCWGG 2 cut(s) 20, 240
PspGI CCWGG 2 cut(s) 20, 240
PspPI GGNCC 2 cut(s) 201, 358
PspXI VCTCGAGB 1 cut(s) 906
RsaI GTAC 5 cut(s) 256, 411, 974, 1076, 1084
RsaNI GTAC 5 cut(s) 255, 410, 973, 1075, 1083
RseI CAYNNNNRTG 1 cut(s) 1109
SacI GAGCTC 1 cut(s) 147
SapI GCTCTTC 1 cut(s) 135
SaqAI TTAA 6 cut(s) 135, 543, 551, 861, 1058, 1121
SatI GCNGC 3 cut(s) 6, 285, 357
Sau3AI GATC 4 cut(s) 330, 595, 700, 949
Sau96I GGNCC 2 cut(s) 201, 358
ScaI AGTACT 1 cut(s) 1076
SchI GAGTC 1 cut(s) 507
ScrFI CCNGG 3 cut(s) 22, 242, 492
SduI GDGCHC 2 cut(s) 147, 907
SfaNI GCATC 4 cut(s) 165, 832, 921, 1089
SfcI CTRYAG 1 cut(s) 1078
Sfr274I CTCGAG 1 cut(s) 906
SlaI CTCGAG 1 cut(s) 906
SmiMI CAYNNNNRTG 1 cut(s) 1109
SmlI CTYRAG 2 cut(s) 71, 906
SmoI CTYRAG 2 cut(s) 71, 906
Sse9I AATT 8 cut(s) 350, 384, 391, 540, 545, 552, 650, 984
SsiI CCGC 6 cut(s) 12, 285, 306, 356, 616, 784
SspI AATATT 1 cut(s) 403
SspMI CTAG 1 cut(s) 458
SstI GAGCTC 1 cut(s) 147
StyD4I CCNGG 3 cut(s) 20, 240, 490
StyI CCWWGG 2 cut(s) 166, 637
TaaI ACNGT 5 cut(s) 58, 802, 869, 1074, 1082
TaiI ACGT 3 cut(s) 532, 612, 930
TaqI TCGA 8 cut(s) 120, 513, 535, 558, 762, 907, 915, 964
TasI AATT 8 cut(s) 350, 384, 391, 540, 545, 552, 650, 984
TatI WGTACW 3 cut(s) 409, 972, 1074
TauI GCSGC 2 cut(s) 287, 359
TfiI GAWTC 5 cut(s) 89, 563, 642, 872, 879
Tru1I TTAA 6 cut(s) 135, 543, 551, 861, 1058, 1121
Tru9I TTAA 6 cut(s) 135, 543, 551, 861, 1058, 1121
TscAI CASTG 2 cut(s) 805, 874
TseFI GTSAC 2 cut(s) 79, 503
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 79, 503
TspDTI ATGAA 8 cut(s) 405, 461, 576, 585, 645, 866, 968, 1121
TspGWI ACGGA 1 cut(s) 480
TspRI CASTG 2 cut(s) 805, 874
VspI ATTAAT 1 cut(s) 551
XceI RCATGY 2 cut(s) 511, 826
XhoI CTCGAG 1 cut(s) 906
XmiI GTMKAC 1 cut(s) 612
XspI CTAG 1 cut(s) 458
ZrmI AGTACT 1 cut(s) 1076
Zsp2I ATGCAT 2 cut(s) 422, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.