Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000818

Physical Location & Seq

Genomic Coordinates Forward (+)

37244494 .. 37246323

Gene Structure 1830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g49811.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGTTCACGGCGGCGGCGGCAAGGCGCTGAAGGAGAAGCTTGAGTTTGTGTCGTCGGATGATGTAGAGCCGATCACGAGCTTTGATCAGATGAACCTCAAGGAGGAGCTCCTCCGAGGCATCTACAACTACGGCTTCGAGAAGCCCTCCGCCATCCAGCAAAGGGCCATCAAACCCATGATCGAGGGCCGTGATGTCATAGCTCAGGCTCAATCCGGCACCGGAAAGACCTCCATGATTGCCATAACTTCTTGCCAAACTGTCGACACCTCCTCCAGAGAGGTTCAGGTACTGATACTATCTCCAACGAGGGAACTGGCGGCACAGACAGAGAAAGTGATACTGGCAATCGGAAACTACATGAGTATTCAAGCGCATTCCTGCATTGGAGGCAAAAGCGTGGGTGAGGATATCAGAAAGCTAGAGAACGGAGTTCAGGTGGTGTCTGGTACTCCTGGTAGAGTCCATGACATGATTCAGAGGGGAACACTACGCACTCGACACATTAAGTTACTAATACTTGATGAATCTGATGAGATGTTGAGCAGAGGCTTCAAGAAGACGATTTATGAAGTCTACAGACATCTACGAGAGGCTCTACAAGTTTGTTTGATCTCTGCGACACTCCCTAATGATATTTTGGAGATGACCAACAAGTTCATGACTGATCCTATTAAGATCCTGGTTAAACGTGACGAGCTGACTTTGGATGGAATCAAGCAATTTTTCGTTAAAGTTGAAAAAGAAGATTGGAAATTTGATACTCTTTGTGATCTCTATGATACGCTTACGATCACACAAGCTGTGATTTTCTGCAACACAAGGCGAAAGGTAGACTGGCTTAGTGAAAAGATGAGGACTAATAACTTTGCTGTTTCTGCAATGCATGGGGATATGCCTCAGAAGGAGAGAGATGCTATTATGAAAGAGTTTCAGAAAGGTCTTTCACGAGTGCTCATCACAACTGATGTTTGGGCTCGGGGCATCGATGTTCAGCAGGTTTCGCTTGTAATCAACTACGATCTTCCAAACAATCGAGAGCTATACATACATAGGATTGGTCGTTCGGGTCGATTTGGGCGCAAGGGTGTGGCAATAAACTTTGTCAAGGACGATGATGAGATGATCTTAAGGGACATTGAACAGTACTATAGTACCCAGATTGACGAGATGCCCGTGAATGTAACTGATTTACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

400

Amino Acids

45.33

Weight (kDa)

6.23

Isoelectric Point (pI)

33.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	50 - 199	2.1e-06	Type III restriction enzyme, res subunit
DEAD	PF00270	51 - 213	5.1e-43	DEAD/DEAH box helicase
Helicase_C	PF00271	252 - 360	2.1e-34	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51380 AT1G51380 AT1G51380 AT1G51380 AT3G19760
fragaria_vesca	FvH4_4g36800 FvH4_4g36800 FvH4_4g36800 FvH4_6g49811 FvH4_6g49900
malus_domestica	MD09G1053900.v1.1 MD09G1189300.v1.1 MD09G1268200.v1.1 MD09G1268600.v1.1 MD09G1268800.v1.1 MD13G1006800.v1.1 MD15G1056500.v1.1 MD16G1001000.v1.1
prunus_persica	Prupe.1G346100_v2.0.a1 Prupe.3G165200_v2.0.a1
pyrus_communis	pycom111g04510 pycom16g00440
rosa_chinensis	RchiOBHm_Chr0c44g0503461 RchiOBHm_Chr0c44g0503501 RchiOBHm_Chr0c44g0503531 RchiOBHm_Chr0c44g0503561 RchiOBHm_Chr0c44g0503691 RchiOBHm_Chr0c44g0503701 RchiOBHm_Chr0c44g0503721 RchiOBHm_Chr0c44g0503751 RchiOBHm_Chr2g0169961 RchiOBHm_Chr4g0386061 RchiOBHm_Chr4g0386101 RchiOBHm_Chr4g0386151 RchiOBHm_Chr4g0386181 RchiOBHm_Chr4g0386221 RchiOBHm_Chr4g0386241 RchiOBHm_Chr4g0386301 RchiOBHm_Chr4g0386341 RchiOBHm_Chr4g0386361 RchiOBHm_Chr4g0446531
rosa_laevigata	RLG00000005651 RLG00000010170 RLG00000010175 RLG00000021914
rosa_multiflora	Rmu_sc0005526.1_g000001 Rmu_sc0005795.1_g000003 Rmu_sc0013078.1_g000019 Rmu_sc0022031.1_g000001 Rmu_ssc0000389.1_g000007
rosa_roxburghii	Rroxscaffold_5G00333840 Rroxscaffold_5G00386950
rosa_rugosa	Rorug02G0544700 Rorug02G0545100 Rorug04G0372300
rosa_samantha	Rh2AG617000 Rh2AG617300 Rh2CG597900 Rh2DG639700 Rh2DG640100 Rh2DG640400 Rh4AG010700 Rh4AG433900 Rh4BG007600 Rh4BG443100 Rh4DG441700
rosa_wichuraiana	Rw2G051090 Rw4G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	988
AccB1I	GGYRCC	1 cut(s)	218
AccI	GTMKAC	3 cut(s)	264, 576, 834
AciI	CCGC	5 cut(s)	12, 15, 18, 150, 320
AclWI	GGATC	2 cut(s)	662, 673
AcsI	RAATTY	1 cut(s)	755
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	4 cut(s)	291, 451, 1148, 1156
AfiI	CCNNNNNNNGG	2 cut(s)	103, 163
AflII	CTTAAG	1 cut(s)	1129
AgsI	TTSAA	4 cut(s)	371, 556, 740, 1142
AjnI	CCWGG	2 cut(s)	454, 681
AloI	GAACNNNNNNTCC	2 cut(s)	1048, 1080
AluBI	AGCT	8 cut(s)	40, 81, 109, 203, 421, 700, 803, 1042
AluI	AGCT	8 cut(s)	40, 81, 109, 203, 421, 700, 803, 1042
Alw21I	GWGCWC	2 cut(s)	111, 957
AlwI	GGATC	2 cut(s)	662, 673
AlwNI	CAGNNNCTG	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	978
AoxI	GGCC	2 cut(s)	165, 187
ApoI	RAATTY	1 cut(s)	755
AspLEI	GCGC	3 cut(s)	28, 376, 1083
AspS9I	GGNCC	2 cut(s)	165, 187
AsuHPI	GGTGA	1 cut(s)	416
AvaI	CYCGRG	1 cut(s)	978
BaeI	ACNNNNGTAYC	2 cut(s)	1138, 1171
BanI	GGYRCC	1 cut(s)	218
BanII	GRGCYC	2 cut(s)	111, 979
BauI	CACGAG	2 cut(s)	76, 948
BbsI	GAAGAC	1 cut(s)	566
Bbv12I	GWGCWC	2 cut(s)	111, 957
BccI	CCATC	3 cut(s)	161, 176, 704
BceAI	ACGGC	3 cut(s)	25, 148, 174
BciT130I	CCWGG	2 cut(s)	456, 683
BclI	TGATCA	1 cut(s)	85
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	2 cut(s)	577, 1150
BfoI	RGCGCY	1 cut(s)	29
BfrI	CTTAAG	1 cut(s)	1129
BfuAI	ACCTGC	1 cut(s)	988
BisI	GCNGC	4 cut(s)	13, 16, 19, 321
BlsI	GCNGC	4 cut(s)	14, 17, 20, 322
BmcAI	AGTACT	1 cut(s)	1148
Bme1390I	CCNGG	2 cut(s)	456, 683
BmeT110I	CYCGRG	1 cut(s)	978
BmgT120I	GGNCC	2 cut(s)	165, 187
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	2 cut(s)	456, 683
BmsI	GCATC	4 cut(s)	129, 904, 993, 1161
BpiI	GAAGAC	1 cut(s)	566
BplI	GAGNNNNNCTC	2 cut(s)	131, 163
BpmI	CTGGAG	1 cut(s)	259
Bpu10I	CCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	2 cut(s)	62, 83
Bsa29I	ATCGAT	1 cut(s)	987
BsaJI	CCNNGG	1 cut(s)	115
BsaWI	WCCGGW	1 cut(s)	221
BsaXI	ACNNNNNCTCC	4 cut(s)	257, 287, 423, 453
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 163
Bse1I	ACTGG	3 cut(s)	321, 348, 842
Bse3DI	GCAATG	1 cut(s)	888
BseBI	CCWGG	2 cut(s)	456, 683
BseCI	ATCGAT	1 cut(s)	987
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	3 cut(s)	64, 153, 715
BseLI	CCNNNNNNNGG	2 cut(s)	103, 163
BseMI	GCAATG	1 cut(s)	888
BseMII	CTCAG	2 cut(s)	218, 914
BseNI	ACTGG	3 cut(s)	321, 348, 842
BseRI	GAGGAG	3 cut(s)	101, 119, 262
BshFI	GGCC	2 cut(s)	167, 189
BshNI	GGYRCC	1 cut(s)	218
BshVI	ATCGAT	1 cut(s)	987
BsiHKAI	GWGCWC	2 cut(s)	111, 957
BsiHKCI	CYCGRG	1 cut(s)	978
BsiSI	CCGG	2 cut(s)	216, 222
BslFI	GGGAC	1 cut(s)	1148
BslI	CCNNNNNNNGG	2 cut(s)	103, 163
BsmFI	GGGAC	1 cut(s)	1148
BsmI	GAATGC	1 cut(s)	376
BsnI	GGCC	2 cut(s)	167, 189
BsoBI	CYCGRG	1 cut(s)	978
Bsp1286I	GDGCHC	3 cut(s)	111, 957, 979
BspACI	CCGC	5 cut(s)	12, 15, 18, 150, 320
BspANI	GGCC	2 cut(s)	167, 189
BspCNI	CTCAG	2 cut(s)	217, 913
BspDI	ATCGAT	1 cut(s)	987
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	1 cut(s)	220
BspMI	ACCTGC	1 cut(s)	988
BspPI	GGATC	2 cut(s)	662, 673
BspT107I	GGYRCC	1 cut(s)	218
BspTI	CTTAAG	1 cut(s)	1129
BsrDI	GCAATG	1 cut(s)	888
BsrI	ACTGG	3 cut(s)	321, 348, 842
BssECI	CCNNGG	1 cut(s)	115
BssSI	CACGAG	2 cut(s)	76, 948
Bst2BI	CACGAG	2 cut(s)	76, 948
Bst2UI	CCWGG	2 cut(s)	456, 683
Bst4CI	ACNGT	3 cut(s)	262, 1146, 1197
BstAFI	CTTAAG	1 cut(s)	1129
BstDEI	CTNAG	3 cut(s)	204, 842, 900
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstF5I	GGATG	3 cut(s)	64, 153, 715
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	3 cut(s)	28, 376, 1083
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 390, 878, 1003
BstNI	CCWGG	2 cut(s)	456, 683
BstSCI	CCNGG	2 cut(s)	454, 681
BstSFI	CTRYAG	2 cut(s)	577, 1150
BstV2I	GAAGAC	1 cut(s)	566
BstX2I	RGATCY	1 cut(s)	678
BstYI	RGATCY	1 cut(s)	678
Bsu15I	ATCGAT	1 cut(s)	987
BsuRI	GGCC	2 cut(s)	167, 189
BsuTUI	ATCGAT	1 cut(s)	987
BtsCI	GGATG	3 cut(s)	64, 153, 715
BveI	ACCTGC	1 cut(s)	988
CaiI	CAGNNNCTG	1 cut(s)	292
CciI	TCATGA	1 cut(s)	660
CfoI	GCGC	3 cut(s)	28, 376, 1083
Cfr13I	GGNCC	2 cut(s)	165, 187
ClaI	ATCGAT	1 cut(s)	987
Csp6I	GTAC	4 cut(s)	290, 450, 1147, 1155
CviAII	CATG	7 cut(s)	178, 235, 361, 467, 472, 661, 887
CviQI	GTAC	4 cut(s)	290, 450, 1147, 1155
DdeI	CTNAG	3 cut(s)	204, 842, 900
EciI	GGCGGA	1 cut(s)	139
Ecl136II	GAGCTC	1 cut(s)	109
Eco24I	GRGCYC	2 cut(s)	111, 979
Eco32I	GATATC	1 cut(s)	412
Eco53kI	GAGCTC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	50
Eco88I	CYCGRG	1 cut(s)	978
EcoICRI	GAGCTC	1 cut(s)	109
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoRII	CCWGG	2 cut(s)	454, 681
EcoRV	GATATC	1 cut(s)	412
EcoT22I	ATGCAT	1 cut(s)	888
EcoT38I	GRGCYC	2 cut(s)	111, 979
FaeI	CATG	7 cut(s)	181, 238, 364, 470, 475, 664, 890
FaqI	GGGAC	1 cut(s)	1148
FatI	CATG	7 cut(s)	177, 234, 360, 466, 471, 660, 886
FbaI	TGATCA	1 cut(s)	85
FblI	GTMKAC	3 cut(s)	264, 576, 834
Fnu4HI	GCNGC	4 cut(s)	13, 16, 19, 321
FokI	GGATG	3 cut(s)	71, 140, 722
FriOI	GRGCYC	2 cut(s)	111, 979
Fsp4HI	GCNGC	4 cut(s)	13, 16, 19, 321
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	3 cut(s)	27, 375, 1082
GluI	GCNGC	4 cut(s)	13, 16, 19, 321
GsuI	CTGGAG	1 cut(s)	259
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	167, 189
HapII	CCGG	2 cut(s)	216, 222
HhaI	GCGC	3 cut(s)	28, 376, 1083
Hin1II	CATG	7 cut(s)	181, 238, 364, 470, 475, 664, 890
Hin6I	GCGC	3 cut(s)	26, 374, 1081
HinP1I	GCGC	3 cut(s)	26, 374, 1081
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	4 cut(s)	462, 475, 527, 714
HpaII	CCGG	2 cut(s)	216, 222
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	4 cut(s)	7, 265, 577, 835
Hpy188I	TCNGA	9 cut(s)	58, 90, 116, 353, 416, 480, 532, 903, 936
Hpy188III	TCNNGA	7 cut(s)	76, 139, 276, 556, 661, 948, 1037
Hpy8I	GTNNAC	4 cut(s)	7, 265, 577, 835
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	2 cut(s)	25, 898
HpyCH4III	ACNGT	3 cut(s)	262, 1146, 1197
HpyCH4IV	ACGT	1 cut(s)	691
HpyCH4V	TGCA	4 cut(s)	384, 816, 881, 886
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 390, 878, 1003
HpyF3I	CTNAG	3 cut(s)	204, 842, 900
HpySE526I	ACGT	1 cut(s)	691
Hsp92II	CATG	7 cut(s)	181, 238, 364, 470, 475, 664, 890
HspAI	GCGC	3 cut(s)	26, 374, 1081
Ksp22I	TGATCA	1 cut(s)	85
LmnI	GCTCC	2 cut(s)	106, 114
LweI	GCATC	4 cut(s)	129, 904, 993, 1161
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	1 cut(s)	691
MaeIII	GTNAC	3 cut(s)	510, 692, 1183
MboII	GAAGA	3 cut(s)	571, 758, 1016
MflI	RGATCY	1 cut(s)	678
MhlI	GDGCHC	3 cut(s)	111, 957, 979
MluCI	AATT	2 cut(s)	722, 755
MlyI	GAGTC	1 cut(s)	471
MmeI	TCCRAC	2 cut(s)	36, 329
Mph1103I	ATGCAT	1 cut(s)	888
MseI	TTAA	5 cut(s)	507, 675, 687, 732, 1130
MspCI	CTTAAG	1 cut(s)	1129
MspI	CCGG	2 cut(s)	216, 222
MspR9I	CCNGG	2 cut(s)	456, 683
Mva1269I	GAATGC	1 cut(s)	376
MvaI	CCWGG	2 cut(s)	456, 683
MwoI	GCNNNNNNNGC	4 cut(s)	18, 390, 878, 1003
NlaIII	CATG	7 cut(s)	181, 238, 364, 470, 475, 664, 890
NlaIV	GGNNCC	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	692
NsiI	ATGCAT	1 cut(s)	888
PagI	TCATGA	1 cut(s)	660
PcsI	WCGNNNNNNNCGW	2 cut(s)	1069, 1173
PctI	GAATGC	1 cut(s)	376
PfeI	GAWTC	3 cut(s)	475, 527, 714
PkrI	GCNGC	4 cut(s)	14, 17, 20, 322
PleI	GAGTC	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	470
Psp124BI	GAGCTC	1 cut(s)	111
Psp6I	CCWGG	2 cut(s)	454, 681
PspGI	CCWGG	2 cut(s)	454, 681
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	2 cut(s)	165, 187
PstNI	CAGNNNCTG	1 cut(s)	292
PsuI	RGATCY	1 cut(s)	678
RsaI	GTAC	4 cut(s)	291, 451, 1148, 1156
RsaNI	GTAC	4 cut(s)	290, 450, 1147, 1155
SacI	GAGCTC	1 cut(s)	111
SalI	GTCGAC	1 cut(s)	263
SaqAI	TTAA	5 cut(s)	507, 675, 687, 732, 1130
SatI	GCNGC	4 cut(s)	13, 16, 19, 321
Sau96I	GGNCC	2 cut(s)	165, 187
ScaI	AGTACT	1 cut(s)	1148
SchI	GAGTC	1 cut(s)	471
ScrFI	CCNGG	2 cut(s)	456, 683
SduI	GDGCHC	3 cut(s)	111, 957, 979
SfaNI	GCATC	4 cut(s)	129, 904, 993, 1161
SfcI	CTRYAG	2 cut(s)	577, 1150
SmlI	CTYRAG	3 cut(s)	41, 98, 1129
SmoI	CTYRAG	3 cut(s)	41, 98, 1129
Sse9I	AATT	2 cut(s)	722, 755
SsiI	CCGC	5 cut(s)	12, 15, 18, 150, 320
SspMI	CTAG	1 cut(s)	422
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	2 cut(s)	454, 681
TaaI	ACNGT	3 cut(s)	262, 1146, 1197
TaiI	ACGT	1 cut(s)	694
TaqI	TCGA	7 cut(s)	138, 183, 264, 499, 987, 1036, 1072
TasI	AATT	2 cut(s)	722, 755
TatI	WGTACW	1 cut(s)	1146
TauI	GCSGC	4 cut(s)	15, 18, 21, 323
TfiI	GAWTC	3 cut(s)	475, 527, 714
Tru1I	TTAA	5 cut(s)	507, 675, 687, 732, 1130
Tru9I	TTAA	5 cut(s)	507, 675, 687, 732, 1130
TseFI	GTSAC	1 cut(s)	692
Tsp45I	GTSAC	1 cut(s)	692
TspDTI	ATGAA	5 cut(s)	107, 540, 585, 649, 938
TspGWI	ACGGA	1 cut(s)	444
Vha464I	CTTAAG	1 cut(s)	1129
XagI	CCTNNNNNAGG	1 cut(s)	101
XapI	RAATTY	1 cut(s)	755
XmiI	GTMKAC	3 cut(s)	264, 576, 834
XspI	CTAG	1 cut(s)	422
ZrmI	AGTACT	1 cut(s)	1148
Zsp2I	ATGCAT	1 cut(s)	888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.