Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000818

Physical Location & Seq

Genomic Coordinates Forward (+)

3574142 .. 3577121

Gene Structure 2980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1053900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGCGGATTCGGTGACGATGGATGCGATAGAGGCGATCACGACCTTCGAATCGATGGGGTTAAACGACGACGTTCTCCGAGGCATCTACCACTTCGGCTTCCAAAAGCCCTCCGCCATCCAGCAGCGCGCCCTTGTCCCTATCATCGGCGGCCACGACGTCATAGCCCAGGCCCAGTCTGGTACCGGAAAAACGTCCATGATTGCCGTCGCTGTCTGCCAGCTCGTCGACACCGCGTCCAGGGAGGTCCAGGCGCTGATACTCTCGCCGACGAGGGAACTGGCGGCGCAGACGGAGAAGGTGGTGCTGGCGGTTGGGGGTTTCGTGAATGTAAAGGCGCATGCTTGTGTCGGAGGCAAAAGCGTGGGCGAGGATATCAGAAAGCTCGAGCACGGGGTCCATGTGGTGTCCGGAACACCCGGCAGAGTCTGCGACATGATCAGGAGGGGAGCTCTGCGCACCCGATCGATCAAATTGTTAGTTCTGGATGAAGCTGATGAGATGCTGACCAGAGAATTCAAGGATCAGATTTACGAGGTCTACCGATATCTTCGACCTGACCTGCAGGTTTGCTTAATTTCCGCTACACTTCCTCAAGAAATTTTGGAGATGACCAACAAGTTTATGACTGACCCCGTAAGGATCCTTGTCAATCGTGATGAATTGACTTTGGAGGGAATTAAGCAGTTTTTCGTTGCAGTTGAAAGAGAAGAATGGAAGTTTGACGCTTTATGTGATCTGTATGATAATCTTACAATTACTCAAGCTGTTATCTTTTGCAACACAAAGCAAAAGCTGAGAAGGGATCCACGGCTGGAGTTCTTGGGTCATGGATTCTGTGTGGACTGGCTCACCGAGATGATGCGGAGCAATAACTTTACTGTGTCTTCAACGTATGGAGACATGCCTCAGATGGAGAGGGATGCTATTATGGCTGAATTTCGCAGTGGCAATACTCGTGTCCTCATCACCACAGATGTTTTGGCCCGGGGTCTTGATGTTCAGCAGGTTTCCTTGGTTATCAATTATGATCTTCCAAACAACCGAGAGCTCTATATTCATCGGATTGGTCGTTCCGGCCGTTTTGGGCGCAAGGGAGTGGCAATAAACTTTGTCAAAAGCGACGATGTAAGGATTTTAAGAGACATTGAGCAGTACTACAGTACCCAGATTGACGAAATGCCAATGAACGTTGCGGATTTGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

403

Amino Acids

45.28

Weight (kDa)

5.53

Isoelectric Point (pI)

33.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	39 - 202	1.2e-41	DEAD/DEAH box helicase
Helicase_C	PF00271	239 - 363	2.8e-31	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51380 AT1G51380 AT1G51380 AT1G51380 AT3G19760
fragaria_vesca	FvH4_4g36800 FvH4_4g36800 FvH4_4g36800 FvH4_6g49811 FvH4_6g49900
malus_domestica	MD09G1053900.v1.1 MD09G1189300.v1.1 MD09G1268200.v1.1 MD09G1268600.v1.1 MD09G1268800.v1.1 MD13G1006800.v1.1 MD15G1056500.v1.1 MD16G1001000.v1.1
prunus_persica	Prupe.1G346100_v2.0.a1 Prupe.3G165200_v2.0.a1
pyrus_communis	pycom111g04510 pycom16g00440
rosa_chinensis	RchiOBHm_Chr0c44g0503461 RchiOBHm_Chr0c44g0503501 RchiOBHm_Chr0c44g0503531 RchiOBHm_Chr0c44g0503561 RchiOBHm_Chr0c44g0503691 RchiOBHm_Chr0c44g0503701 RchiOBHm_Chr0c44g0503721 RchiOBHm_Chr0c44g0503751 RchiOBHm_Chr2g0169961 RchiOBHm_Chr4g0386061 RchiOBHm_Chr4g0386101 RchiOBHm_Chr4g0386151 RchiOBHm_Chr4g0386181 RchiOBHm_Chr4g0386221 RchiOBHm_Chr4g0386241 RchiOBHm_Chr4g0386301 RchiOBHm_Chr4g0386341 RchiOBHm_Chr4g0386361 RchiOBHm_Chr4g0446531
rosa_laevigata	RLG00000005651 RLG00000010170 RLG00000010175 RLG00000021914
rosa_multiflora	Rmu_sc0005526.1_g000001 Rmu_sc0005795.1_g000003 Rmu_sc0013078.1_g000019 Rmu_sc0022031.1_g000001 Rmu_ssc0000389.1_g000007
rosa_roxburghii	Rroxscaffold_5G00333840 Rroxscaffold_5G00386950
rosa_rugosa	Rorug02G0544700 Rorug02G0545100 Rorug04G0372300
rosa_samantha	Rh2AG617000 Rh2AG617300 Rh2CG597900 Rh2DG639700 Rh2DG640100 Rh2DG640400 Rh4AG010700 Rh4AG433900 Rh4BG007600 Rh4BG443100 Rh4DG441700
rosa_wichuraiana	Rw2G051090 Rw4G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	162
Acc16I	TGCGCA	1 cut(s)	458
Acc36I	ACCTGC	3 cut(s)	556, 570, 997
Acc65I	GGTACC	1 cut(s)	182
AccB1I	GGYRCC	1 cut(s)	182
AccI	GTMKAC	2 cut(s)	228, 540
AccII	CGCG	2 cut(s)	129, 236
AccIII	TCCGGA	1 cut(s)	410
AciI	CCGC	9 cut(s)	5, 114, 150, 234, 284, 311, 582, 865, 1196
AclI	AACGTT	1 cut(s)	1191
AclWI	GGATC	5 cut(s)	531, 637, 650, 800, 813
AcoI	YGGCCR	2 cut(s)	151, 1078
AcsI	RAATTY	3 cut(s)	515, 600, 938
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	3 cut(s)	184, 1157, 1165
AfiI	CCNNNNNNNGG	2 cut(s)	146, 240
AgsI	TTSAA	3 cut(s)	520, 704, 891
AhdI	GACNNNNNGTC	1 cut(s)	235
AjnI	CCWGG	3 cut(s)	168, 239, 249
AloI	GAACNNNNNNTCC	2 cut(s)	1057, 1089
AluBI	AGCT	7 cut(s)	223, 385, 452, 494, 767, 796, 1051
AluI	AGCT	7 cut(s)	223, 385, 452, 494, 767, 796, 1051
Alw21I	GWGCWC	3 cut(s)	393, 454, 1053
Alw26I	GTCTC	2 cut(s)	894, 1137
AlwI	GGATC	5 cut(s)	531, 637, 650, 800, 813
AlwNI	CAGNNNCTG	2 cut(s)	256, 429
Ama87I	CYCGRG	2 cut(s)	386, 987
Aor13HI	TCCGGA	1 cut(s)	410
AoxI	GGCC	4 cut(s)	151, 171, 984, 1078
ApeKI	GCWGC	1 cut(s)	124
ApoI	RAATTY	3 cut(s)	515, 600, 938
Asp718I	GGTACC	1 cut(s)	182
AspLEI	GCGC	7 cut(s)	129, 131, 256, 289, 340, 459, 1092
AspS9I	GGNCC	4 cut(s)	172, 247, 397, 985
AsuC2I	CCSGG	3 cut(s)	420, 988, 989
AsuHPI	GGTGA	3 cut(s)	25, 844, 961
AsuII	TTCGAA	1 cut(s)	48
AvaI	CYCGRG	2 cut(s)	386, 987
AvaII	GGWCC	2 cut(s)	247, 397
BaeI	ACNNNNGTAYC	2 cut(s)	1147, 1180
BamHI	GGATCC	2 cut(s)	642, 805
BanI	GGYRCC	1 cut(s)	182
BanII	GRGCYC	2 cut(s)	454, 1053
BauI	CACGAG	1 cut(s)	957
BbsI	GAAGAC	1 cut(s)	879
Bbv12I	GWGCWC	3 cut(s)	393, 454, 1053
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	4 cut(s)	13, 49, 125, 907
BceAI	ACGGC	3 cut(s)	191, 827, 1065
BciT130I	CCWGG	3 cut(s)	170, 241, 251
BclI	TGATCA	1 cut(s)	438
BcnI	CCSGG	3 cut(s)	420, 988, 989
BcoDI	GTCTC	2 cut(s)	894, 1137
BfmI	CTRYAG	2 cut(s)	563, 1159
BfoI	RGCGCY	1 cut(s)	257
BfuAI	ACCTGC	3 cut(s)	556, 570, 997
BisI	GCNGC	3 cut(s)	125, 151, 285
BlsI	GCNGC	3 cut(s)	126, 152, 286
BmcAI	AGTACT	1 cut(s)	1157
Bme1390I	CCNGG	6 cut(s)	170, 241, 251, 420, 988, 989
Bme18I	GGWCC	2 cut(s)	247, 397
BmeRI	GACNNNNNGTC	1 cut(s)	235
BmeT110I	CYCGRG	2 cut(s)	386, 987
BmgT120I	GGNCC	4 cut(s)	172, 247, 397, 985
BmiI	GGNNCC	4 cut(s)	184, 398, 644, 807
BmrFI	CCNGG	6 cut(s)	170, 241, 251, 420, 988, 989
BmrI	ACTGGG	1 cut(s)	169
BmsI	GCATC	5 cut(s)	13, 93, 492, 852, 913
BmuI	ACTGGG	1 cut(s)	169
BpiI	GAAGAC	1 cut(s)	879
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
BpmI	CTGGAG	1 cut(s)	836
Bpu14I	TTCGAA	1 cut(s)	48
BpuEI	CTTGAG	2 cut(s)	579, 747
BpuMI	CCSGG	3 cut(s)	420, 988, 989
Bsa29I	ATCGAT	2 cut(s)	53, 467
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	7 cut(s)	79, 168, 240, 809, 987, 988, 1014
BsaWI	WCCGGW	2 cut(s)	185, 410
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 240
Bse1I	ACTGG	3 cut(s)	175, 285, 851
BseAI	TCCGGA	1 cut(s)	410
BseBI	CCWGG	3 cut(s)	170, 241, 251
BseCI	ATCGAT	2 cut(s)	53, 467
BseDI	CCNNGG	7 cut(s)	79, 168, 240, 809, 987, 988, 1014
BseGI	GGATG	4 cut(s)	28, 117, 493, 928
BseLI	CCNNNNNNNGG	2 cut(s)	146, 240
BseMII	CTCAG	2 cut(s)	788, 923
BseNI	ACTGG	3 cut(s)	175, 285, 851
BsePI	GCGCGC	1 cut(s)	127
BseX3I	CGGCCG	1 cut(s)	1078
BseXI	GCAGC	1 cut(s)	136
Bsh1236I	CGCG	2 cut(s)	129, 236
Bsh1285I	CGRYCG	2 cut(s)	467, 1081
BshFI	GGCC	4 cut(s)	153, 173, 986, 1080
BshNI	GGYRCC	1 cut(s)	182
BshVI	ATCGAT	2 cut(s)	53, 467
BsiEI	CGRYCG	2 cut(s)	467, 1081
BsiHKAI	GWGCWC	3 cut(s)	393, 454, 1053
BsiHKCI	CYCGRG	2 cut(s)	386, 987
BsiSI	CCGG	5 cut(s)	186, 411, 420, 988, 1077
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	2 cut(s)	146, 240
BsmAI	GTCTC	2 cut(s)	894, 1137
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	4 cut(s)	153, 173, 986, 1080
BsoBI	CYCGRG	2 cut(s)	386, 987
Bsp119I	TTCGAA	1 cut(s)	48
Bsp1286I	GDGCHC	3 cut(s)	393, 454, 1053
Bsp13I	TCCGGA	1 cut(s)	410
Bsp143I	GATC	9 cut(s)	36, 438, 464, 468, 523, 642, 736, 805, 1030
BspACI	CCGC	9 cut(s)	5, 114, 150, 234, 284, 311, 582, 865, 1196
BspANI	GGCC	4 cut(s)	153, 173, 986, 1080
BspCNI	CTCAG	2 cut(s)	789, 922
BspDI	ATCGAT	2 cut(s)	53, 467
BspEI	TCCGGA	1 cut(s)	410
BspFNI	CGCG	2 cut(s)	129, 236
BspLI	GGNNCC	4 cut(s)	184, 398, 644, 807
BspMAI	CTGCAG	1 cut(s)	567
BspMI	ACCTGC	3 cut(s)	556, 570, 997
BspPI	GGATC	5 cut(s)	531, 637, 650, 800, 813
BspT104I	TTCGAA	1 cut(s)	48
BspT107I	GGYRCC	1 cut(s)	182
BsrI	ACTGG	3 cut(s)	175, 285, 851
BssECI	CCNNGG	7 cut(s)	79, 168, 240, 809, 987, 988, 1014
BssHII	GCGCGC	1 cut(s)	127
BssMI	GATC	9 cut(s)	36, 438, 464, 468, 523, 642, 736, 805, 1030
BssNI	GRCGYC	1 cut(s)	159
BssSI	CACGAG	1 cut(s)	957
BssT1I	CCWWGG	1 cut(s)	1014
Bst2BI	CACGAG	1 cut(s)	957
Bst2UI	CCWGG	3 cut(s)	170, 241, 251
Bst4CI	ACNGT	2 cut(s)	883, 1163
BstACI	GRCGYC	1 cut(s)	159
BstAPI	GCANNNNNTGC	1 cut(s)	429
BstBI	TTCGAA	1 cut(s)	48
BstC8I	GCNNGC	4 cut(s)	129, 221, 309, 342
BstDEI	CTNAG	2 cut(s)	797, 909
BstDSI	CCRYGG	1 cut(s)	809
BstF5I	GGATG	4 cut(s)	28, 117, 493, 928
BstFNI	CGCG	2 cut(s)	129, 236
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	7 cut(s)	129, 131, 256, 289, 340, 459, 1092
BstKTI	GATC	9 cut(s)	39, 441, 467, 471, 526, 645, 739, 808, 1033
BstMAI	GTCTC	2 cut(s)	894, 1137
BstMBI	GATC	9 cut(s)	36, 438, 464, 468, 523, 642, 736, 805, 1030
BstMCI	CGRYCG	2 cut(s)	467, 1081
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 429, 932
BstNI	CCWGG	3 cut(s)	170, 241, 251
BstNSI	RCATGY	2 cut(s)	344, 907
BstSCI	CCNGG	6 cut(s)	168, 239, 249, 418, 986, 987
BstSFI	CTRYAG	2 cut(s)	563, 1159
BstUI	CGCG	2 cut(s)	129, 236
BstV1I	GCAGC	1 cut(s)	136
BstV2I	GAAGAC	1 cut(s)	879
BstX2I	RGATCY	2 cut(s)	642, 805
BstYI	RGATCY	2 cut(s)	642, 805
BstZI	CGGCCG	1 cut(s)	1078
Bsu15I	ATCGAT	2 cut(s)	53, 467
BsuRI	GGCC	4 cut(s)	153, 173, 986, 1080
BsuTUI	ATCGAT	2 cut(s)	53, 467
BtgI	CCRYGG	1 cut(s)	809
BtsCI	GGATG	4 cut(s)	28, 117, 493, 928
BtsI	GCAGTG	1 cut(s)	952
BtsIMutI	CAGTG	1 cut(s)	952
BveI	ACCTGC	3 cut(s)	556, 570, 997
Cac8I	GCNNGC	4 cut(s)	129, 221, 309, 342
CaiI	CAGNNNCTG	2 cut(s)	256, 429
CfoI	GCGC	7 cut(s)	129, 131, 256, 289, 340, 459, 1092
Cfr13I	GGNCC	4 cut(s)	172, 247, 397, 985
Cfr9I	CCCGGG	1 cut(s)	987
ClaI	ATCGAT	2 cut(s)	53, 467
CseI	GACGC	2 cut(s)	225, 734
Csp6I	GTAC	3 cut(s)	183, 1156, 1164
CviAII	CATG	6 cut(s)	199, 341, 401, 436, 830, 904
CviQI	GTAC	3 cut(s)	183, 1156, 1164
DdeI	CTNAG	2 cut(s)	797, 909
DpnI	GATC	9 cut(s)	38, 440, 466, 470, 525, 644, 738, 807, 1032
DpnII	GATC	9 cut(s)	36, 438, 464, 468, 523, 642, 736, 805, 1030
DriI	GACNNNNNGTC	1 cut(s)	235
EaeI	YGGCCR	2 cut(s)	151, 1078
EagI	CGGCCG	1 cut(s)	1078
Eam1105I	GACNNNNNGTC	1 cut(s)	235
EciI	GGCGGA	2 cut(s)	20, 103
Ecl136II	GAGCTC	2 cut(s)	452, 1051
EclXI	CGGCCG	1 cut(s)	1078
Eco130I	CCWWGG	1 cut(s)	1014
Eco24I	GRGCYC	2 cut(s)	454, 1053
Eco32I	GATATC	2 cut(s)	376, 548
Eco47I	GGWCC	2 cut(s)	247, 397
Eco52I	CGGCCG	1 cut(s)	1078
Eco53kI	GAGCTC	2 cut(s)	452, 1051
Eco88I	CYCGRG	2 cut(s)	386, 987
EcoICRI	GAGCTC	2 cut(s)	452, 1051
EcoRI	GAATTC	1 cut(s)	515
EcoRII	CCWGG	3 cut(s)	168, 239, 249
EcoRV	GATATC	2 cut(s)	376, 548
EcoT14I	CCWWGG	1 cut(s)	1014
EcoT38I	GRGCYC	2 cut(s)	454, 1053
ErhI	CCWWGG	1 cut(s)	1014
FaeI	CATG	6 cut(s)	202, 344, 404, 439, 833, 907
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	6 cut(s)	198, 340, 400, 435, 829, 903
FbaI	TGATCA	1 cut(s)	438
FblI	GTMKAC	2 cut(s)	228, 540
Fnu4HI	GCNGC	3 cut(s)	125, 151, 285
FokI	GGATG	4 cut(s)	35, 104, 500, 935
FriOI	GRGCYC	2 cut(s)	454, 1053
Fsp4HI	GCNGC	3 cut(s)	125, 151, 285
FspI	TGCGCA	1 cut(s)	458
GlaI	GCGC	7 cut(s)	128, 130, 255, 288, 339, 458, 1091
GluI	GCNGC	3 cut(s)	125, 151, 285
GsuI	CTGGAG	1 cut(s)	836
HaeII	RGCGCY	1 cut(s)	257
HaeIII	GGCC	4 cut(s)	153, 173, 986, 1080
HapII	CCGG	5 cut(s)	186, 411, 420, 988, 1077
HgaI	GACGC	2 cut(s)	225, 734
HhaI	GCGC	7 cut(s)	129, 131, 256, 289, 340, 459, 1092
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	6 cut(s)	202, 344, 404, 439, 833, 907
Hin6I	GCGC	7 cut(s)	127, 129, 254, 287, 338, 457, 1090
HinP1I	GCGC	7 cut(s)	127, 129, 254, 287, 338, 457, 1090
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	4 cut(s)	8, 50, 426, 834
HpaII	CCGG	5 cut(s)	186, 411, 420, 988, 1077
HphI	GGTGA	3 cut(s)	25, 844, 961
Hpy166II	GTNNAC	3 cut(s)	229, 541, 844
Hpy188I	TCNGA	6 cut(s)	80, 353, 380, 528, 912, 1065
Hpy188III	TCNNGA	8 cut(s)	40, 325, 411, 442, 485, 596, 656, 995
Hpy8I	GTNNAC	3 cut(s)	229, 541, 844
Hpy99I	CGWCG	7 cut(s)	71, 74, 161, 212, 230, 274, 1127
HpyAV	CCTTC	3 cut(s)	55, 292, 795
HpyCH4III	ACNGT	2 cut(s)	883, 1163
HpyCH4IV	ACGT	5 cut(s)	72, 159, 194, 893, 1191
HpyCH4V	TGCA	3 cut(s)	565, 698, 780
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 429, 932
HpyF3I	CTNAG	2 cut(s)	797, 909
HpySE526I	ACGT	5 cut(s)	72, 159, 194, 893, 1191
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	6 cut(s)	202, 344, 404, 439, 833, 907
HspAI	GCGC	7 cut(s)	127, 129, 254, 287, 338, 457, 1090
Kpn2I	TCCGGA	1 cut(s)	410
KpnI	GGTACC	1 cut(s)	186
Ksp22I	TGATCA	1 cut(s)	438
Kzo9I	GATC	9 cut(s)	36, 438, 464, 468, 523, 642, 736, 805, 1030
LmnI	GCTCC	2 cut(s)	449, 867
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	5 cut(s)	13, 93, 492, 852, 913
MaeII	ACGT	5 cut(s)	72, 159, 194, 893, 1191
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	9 cut(s)	38, 440, 466, 470, 525, 644, 738, 807, 1032
MboI	GATC	9 cut(s)	36, 438, 464, 468, 523, 642, 736, 805, 1030
MboII	GAAGA	4 cut(s)	542, 722, 879, 1025
MflI	RGATCY	2 cut(s)	642, 805
MhlI	GDGCHC	3 cut(s)	393, 454, 1053
MluCI	AATT	9 cut(s)	473, 515, 576, 600, 662, 678, 756, 938, 1024
MlyI	GAGTC	1 cut(s)	435
MmeI	TCCRAC	1 cut(s)	331
MroI	TCCGGA	1 cut(s)	410
MseI	TTAA	4 cut(s)	62, 575, 681, 1139
MslI	CAYNNNNRTG	2 cut(s)	345, 857
MspI	CCGG	5 cut(s)	186, 411, 420, 988, 1077
MspR9I	CCNGG	6 cut(s)	170, 241, 251, 420, 988, 989
MvaI	CCWGG	3 cut(s)	170, 241, 251
MvnI	CGCG	2 cut(s)	129, 236
MwoI	GCNNNNNNNGC	3 cut(s)	32, 429, 932
NciI	CCSGG	3 cut(s)	420, 988, 989
NdeII	GATC	9 cut(s)	36, 438, 464, 468, 523, 642, 736, 805, 1030
NlaIII	CATG	6 cut(s)	202, 344, 404, 439, 833, 907
NlaIV	GGNNCC	4 cut(s)	184, 398, 644, 807
NmuCI	GTSAC	1 cut(s)	13
NsbI	TGCGCA	1 cut(s)	458
NspI	RCATGY	2 cut(s)	344, 907
NspV	TTCGAA	1 cut(s)	48
PaeI	GCATGC	1 cut(s)	344
PaeR7I	CTCGAG	1 cut(s)	386
PauI	GCGCGC	1 cut(s)	127
PcsI	WCGNNNNNNNCGW	4 cut(s)	23, 153, 1069, 1078
PfeI	GAWTC	3 cut(s)	8, 50, 834
PkrI	GCNGC	3 cut(s)	126, 152, 286
Ple19I	CGATCG	1 cut(s)	467
PleI	GAGTC	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	434
Psp124BI	GAGCTC	2 cut(s)	454, 1053
Psp1406I	AACGTT	1 cut(s)	1191
Psp6I	CCWGG	3 cut(s)	168, 239, 249
PspGI	CCWGG	3 cut(s)	168, 239, 249
PspN4I	GGNNCC	4 cut(s)	184, 398, 644, 807
PspPI	GGNCC	4 cut(s)	172, 247, 397, 985
PspXI	VCTCGAGB	1 cut(s)	386
PstI	CTGCAG	1 cut(s)	567
PstNI	CAGNNNCTG	2 cut(s)	256, 429
PsuI	RGATCY	2 cut(s)	642, 805
PteI	GCGCGC	1 cut(s)	127
PvuI	CGATCG	1 cut(s)	467
RsaI	GTAC	3 cut(s)	184, 1157, 1165
RsaNI	GTAC	3 cut(s)	183, 1156, 1164
RseI	CAYNNNNRTG	2 cut(s)	345, 857
SacI	GAGCTC	2 cut(s)	454, 1053
SalI	GTCGAC	1 cut(s)	227
SaqAI	TTAA	4 cut(s)	62, 575, 681, 1139
SatI	GCNGC	3 cut(s)	125, 151, 285
Sau3AI	GATC	9 cut(s)	36, 438, 464, 468, 523, 642, 736, 805, 1030
Sau96I	GGNCC	4 cut(s)	172, 247, 397, 985
SbfI	CCTGCAGG	1 cut(s)	567
ScaI	AGTACT	1 cut(s)	1157
SchI	GAGTC	1 cut(s)	435
ScrFI	CCNGG	6 cut(s)	170, 241, 251, 420, 988, 989
SdaI	CCTGCAGG	1 cut(s)	567
SduI	GDGCHC	3 cut(s)	393, 454, 1053
SfaNI	GCATC	5 cut(s)	13, 93, 492, 852, 913
SfcI	CTRYAG	2 cut(s)	563, 1159
Sfr274I	CTCGAG	1 cut(s)	386
SfuI	TTCGAA	1 cut(s)	48
SinI	GGWCC	2 cut(s)	247, 397
SlaI	CTCGAG	1 cut(s)	386
SmaI	CCCGGG	1 cut(s)	989
SmiMI	CAYNNNNRTG	2 cut(s)	345, 857
SmlI	CTYRAG	3 cut(s)	386, 594, 762
SmoI	CTYRAG	3 cut(s)	386, 594, 762
SphI	GCATGC	1 cut(s)	344
Sse8387I	CCTGCAGG	1 cut(s)	567
Sse9I	AATT	9 cut(s)	473, 515, 576, 600, 662, 678, 756, 938, 1024
SsiI	CCGC	9 cut(s)	5, 114, 150, 234, 284, 311, 582, 865, 1196
SstI	GAGCTC	2 cut(s)	454, 1053
StyD4I	CCNGG	6 cut(s)	168, 239, 249, 418, 986, 987
StyI	CCWWGG	1 cut(s)	1014
TaaI	ACNGT	2 cut(s)	883, 1163
TaiI	ACGT	5 cut(s)	75, 162, 197, 896, 1194
TaqI	TCGA	6 cut(s)	48, 53, 228, 387, 467, 553
TasI	AATT	9 cut(s)	473, 515, 576, 600, 662, 678, 756, 938, 1024
TatI	WGTACW	1 cut(s)	1155
TauI	GCSGC	2 cut(s)	153, 287
TfiI	GAWTC	3 cut(s)	8, 50, 834
Tru1I	TTAA	4 cut(s)	62, 575, 681, 1139
Tru9I	TTAA	4 cut(s)	62, 575, 681, 1139
TscAI	CASTG	1 cut(s)	952
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	4 cut(s)	504, 675, 1049, 1202
TspGWI	ACGGA	1 cut(s)	308
TspMI	CCCGGG	1 cut(s)	987
TspRI	CASTG	1 cut(s)	952
VpaK11BI	GGWCC	2 cut(s)	247, 397
XapI	RAATTY	3 cut(s)	515, 600, 938
XceI	RCATGY	2 cut(s)	344, 907
XcmI	CCANNNNNNNNNTGG	2 cut(s)	176, 979
XhoI	CTCGAG	1 cut(s)	386
XmaI	CCCGGG	1 cut(s)	987
XmiI	GTMKAC	2 cut(s)	228, 540
ZraI	GACGTC	1 cut(s)	160
ZrmI	AGTACT	1 cut(s)	1157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.