RCHIOBHM_CHR0C44G0503561

Eukaryotic initiation factor

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 585 bp
ATGTTGAGCAGAGGCTTCAAGGATCAGATTTACAACGTCTACCGCTATCTTTCGCATGAAGTCCAAGTATGCTTGATTTCTGCCACACTTCCAAATGAAATTCTCGAGATGACTAAACTATTCATGACTGATCCCGTAAGGATCTTGGTCAAGCGTGATGAGCTGACTTTACAGGGAATCAAGCAATTTTTTGTTTCAGTTGAAAGAGAAGATTGGAAGTTTGATACTCTCTGTGATCTCTATGATACCCTTACGATTACACAAGCTGTTGTTTTCTGCAACATAAAGCGAAAGAAAGAGAGAGATGCTATAATGAAAGACTTTAAGAACAGTGAATCACGAATCCTCATCACAACAGATGTTTGGGCTCGAGGCATCGATGTTCAACACGTTTCGTTGGTTATCAACTATGATCTTCCAAACAATCGAGAGCTGTACATTCATAGAATTGGTCGTTCGGGTCGTTTTGGACGCAAAGGTGTGGCAATCAACTTTGTCAAGAACGATGATATCAGGATTTTAAGAGACATTGAACAGTACTACAGTACCCAGATTGATGAGATGCCCATGAATGTGGCTGATTGA

Protein Analysis

194

Amino Acids

22.88

Weight (kDa)

6.84

Isoelectric Point (pI)

32.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 39
AciI CCGC 1 cut(s) 43
AclWI GGATC 3 cut(s) 30, 125, 149
AcsI RAATTY 1 cut(s) 99
AfaI GTAC 3 cut(s) 437, 539, 547
AflIII ACRYGT 1 cut(s) 388
AgsI TTSAA 4 cut(s) 19, 203, 386, 533
AluBI AGCT 3 cut(s) 163, 266, 433
AluI AGCT 3 cut(s) 163, 266, 433
Alw26I GTCTC 1 cut(s) 519
AlwI GGATC 3 cut(s) 30, 125, 149
Ama87I CYCGRG 2 cut(s) 104, 369
ApoI RAATTY 1 cut(s) 99
AvaI CYCGRG 2 cut(s) 104, 369
BaeI ACNNNNGTAYC 2 cut(s) 529, 562
BanII GRGCYC 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 519
BfmI CTRYAG 1 cut(s) 541
BmcAI AGTACT 1 cut(s) 539
BmeT110I CYCGRG 2 cut(s) 104, 369
BmsI GCATC 3 cut(s) 295, 384, 552
Bsa29I ATCGAT 1 cut(s) 378
BseCI ATCGAT 1 cut(s) 378
BshVI ATCGAT 1 cut(s) 378
BsiHKCI CYCGRG 2 cut(s) 104, 369
BsmAI GTCTC 1 cut(s) 519
BsoBI CYCGRG 2 cut(s) 104, 369
Bsp1286I GDGCHC 1 cut(s) 370
Bsp1407I TGTACA 1 cut(s) 435
Bsp143I GATC 5 cut(s) 22, 130, 141, 235, 412
BspACI CCGC 1 cut(s) 43
BspDI ATCGAT 1 cut(s) 378
BspHI TCATGA 1 cut(s) 123
BspPI GGATC 3 cut(s) 30, 125, 149
BsrGI TGTACA 1 cut(s) 435
BssMI GATC 5 cut(s) 22, 130, 141, 235, 412
Bst4CI ACNGT 3 cut(s) 332, 537, 545
BstAUI TGTACA 1 cut(s) 435
BstKTI GATC 5 cut(s) 25, 133, 144, 238, 415
BstMAI GTCTC 1 cut(s) 519
BstMBI GATC 5 cut(s) 22, 130, 141, 235, 412
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 541
BstX2I RGATCY 1 cut(s) 141
BstXI CCANNNNNNTGG 1 cut(s) 574
BstYI RGATCY 1 cut(s) 141
Bsu15I ATCGAT 1 cut(s) 378
BsuTUI ATCGAT 1 cut(s) 378
BtsIMutI CAGTG 1 cut(s) 337
CciI TCATGA 1 cut(s) 123
ClaI ATCGAT 1 cut(s) 378
CseI GACGC 1 cut(s) 480
Csp6I GTAC 3 cut(s) 436, 538, 546
CviAII CATG 3 cut(s) 56, 124, 568
CviJI RGCY 6 cut(s) 15, 163, 266, 368, 433, 578
CviKI_1 RGCY 6 cut(s) 15, 163, 266, 368, 433, 578
CviQI GTAC 3 cut(s) 436, 538, 546
DpnI GATC 5 cut(s) 24, 132, 143, 237, 414
DpnII GATC 5 cut(s) 22, 130, 141, 235, 412
Eco24I GRGCYC 1 cut(s) 370
Eco32I GATATC 1 cut(s) 511
Eco88I CYCGRG 2 cut(s) 104, 369
EcoRV GATATC 1 cut(s) 511
EcoT38I GRGCYC 1 cut(s) 370
FaeI CATG 3 cut(s) 59, 127, 571
FaiI YATR 9 cut(s) 57, 70, 125, 243, 284, 311, 411, 444, 569
FatI CATG 3 cut(s) 55, 123, 567
FblI GTMKAC 1 cut(s) 39
FriOI GRGCYC 1 cut(s) 370
HgaI GACGC 1 cut(s) 480
Hin1II CATG 3 cut(s) 59, 127, 571
HinfI GANTC 3 cut(s) 177, 335, 342
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 7 cut(s) 104, 106, 124, 339, 428, 499, 514
Hpy8I GTNNAC 1 cut(s) 40
HpyCH4III ACNGT 3 cut(s) 332, 537, 545
HpyCH4IV ACGT 2 cut(s) 36, 390
HpyCH4V TGCA 1 cut(s) 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpySE526I ACGT 2 cut(s) 36, 390
Hsp92II CATG 3 cut(s) 59, 127, 571
Kzo9I GATC 5 cut(s) 22, 130, 141, 235, 412
LpnPI CCDG 3 cut(s) 158, 499, 563
LweI GCATC 3 cut(s) 295, 384, 552
MaeII ACGT 2 cut(s) 36, 390
MalI GATC 5 cut(s) 24, 132, 143, 237, 414
MboI GATC 5 cut(s) 22, 130, 141, 235, 412
MboII GAAGA 2 cut(s) 221, 407
MflI RGATCY 1 cut(s) 141
MhlI GDGCHC 1 cut(s) 370
MluCI AATT 3 cut(s) 99, 185, 447
MnlI CCTC 3 cut(s) 5, 356, 365
MseI TTAA 2 cut(s) 324, 521
MslI CAYNNNNRTG 1 cut(s) 572
MwoI GCNNNNNNNGC 1 cut(s) 160
NdeII GATC 5 cut(s) 22, 130, 141, 235, 412
NlaIII CATG 3 cut(s) 59, 127, 571
PaeR7I CTCGAG 2 cut(s) 104, 369
PagI TCATGA 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 460
PfeI GAWTC 3 cut(s) 177, 335, 342
PspXI VCTCGAGB 1 cut(s) 369
PsuI RGATCY 1 cut(s) 141
RsaI GTAC 3 cut(s) 437, 539, 547
RsaNI GTAC 3 cut(s) 436, 538, 546
RseI CAYNNNNRTG 1 cut(s) 572
SaqAI TTAA 2 cut(s) 324, 521
Sau3AI GATC 5 cut(s) 22, 130, 141, 235, 412
ScaI AGTACT 1 cut(s) 539
SduI GDGCHC 1 cut(s) 370
SetI ASST 6 cut(s) 39, 165, 268, 393, 435, 481
SfaNI GCATC 3 cut(s) 295, 384, 552
SfcI CTRYAG 1 cut(s) 541
Sfr274I CTCGAG 2 cut(s) 104, 369
SlaI CTCGAG 2 cut(s) 104, 369
SmiMI CAYNNNNRTG 1 cut(s) 572
SmlI CTYRAG 2 cut(s) 104, 369
SmoI CTYRAG 2 cut(s) 104, 369
Sse9I AATT 3 cut(s) 99, 185, 447
SsiI CCGC 1 cut(s) 43
TaaI ACNGT 3 cut(s) 332, 537, 545
TaiI ACGT 2 cut(s) 39, 393
TaqI TCGA 4 cut(s) 105, 370, 378, 427
TasI AATT 3 cut(s) 99, 185, 447
TatI WGTACW 2 cut(s) 435, 537
TfiI GAWTC 3 cut(s) 177, 335, 342
Tru1I TTAA 2 cut(s) 324, 521
Tru9I TTAA 2 cut(s) 324, 521
TscAI CASTG 1 cut(s) 337
TspDTI ATGAA 6 cut(s) 72, 111, 112, 329, 431, 584
TspRI CASTG 1 cut(s) 337
XapI RAATTY 1 cut(s) 99
XhoI CTCGAG 2 cut(s) 104, 369
XmiI GTMKAC 1 cut(s) 39
ZrmI AGTACT 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.