Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000818

Physical Location & Seq

Genomic Coordinates Reverse (-)

1743364 .. 1743582

Gene Structure 219 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35956

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGCGGACTAGTAACTTTTCTGTGTCTGCAACGCATGGAGACATGCCTCAGAAGGAGCGAGCTGATGCTATTATGAAAGAGTTTCAGAAAGGTCTTTCACGAGTTCTCATCACAACTGATGTTTGGGCTCTAGGCATCGATGTTCAGCAGGTTTCGCTGGTTATCAACTATGATCTTCCAAATAATCGAAAGCTATACATACATAGGATTGGTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

72

Amino Acids

8.24

Weight (kDa)

9.69

Isoelectric Point (pI)

19.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	4 - 72	3e-22	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51380 AT1G51380 AT1G51380 AT1G51380 AT3G19760
fragaria_vesca	FvH4_4g36800 FvH4_4g36800 FvH4_4g36800 FvH4_6g49811 FvH4_6g49900
malus_domestica	MD09G1053900.v1.1 MD09G1189300.v1.1 MD09G1268200.v1.1 MD09G1268600.v1.1 MD09G1268800.v1.1 MD13G1006800.v1.1 MD15G1056500.v1.1 MD16G1001000.v1.1
prunus_persica	Prupe.1G346100_v2.0.a1 Prupe.3G165200_v2.0.a1
pyrus_communis	pycom111g04510 pycom16g00440
rosa_chinensis	RchiOBHm_Chr0c44g0503461 RchiOBHm_Chr0c44g0503501 RchiOBHm_Chr0c44g0503531 RchiOBHm_Chr0c44g0503561 RchiOBHm_Chr0c44g0503691 RchiOBHm_Chr0c44g0503701 RchiOBHm_Chr0c44g0503721 RchiOBHm_Chr0c44g0503751 RchiOBHm_Chr2g0169961 RchiOBHm_Chr4g0386061 RchiOBHm_Chr4g0386101 RchiOBHm_Chr4g0386151 RchiOBHm_Chr4g0386181 RchiOBHm_Chr4g0386221 RchiOBHm_Chr4g0386241 RchiOBHm_Chr4g0386301 RchiOBHm_Chr4g0386341 RchiOBHm_Chr4g0386361 RchiOBHm_Chr4g0446531
rosa_laevigata	RLG00000005651 RLG00000010170 RLG00000010175 RLG00000021914
rosa_multiflora	Rmu_sc0005526.1_g000001 Rmu_sc0005795.1_g000003 Rmu_sc0013078.1_g000019 Rmu_sc0022031.1_g000001 Rmu_ssc0000389.1_g000007
rosa_roxburghii	Rroxscaffold_5G00333840 Rroxscaffold_5G00386950
rosa_rugosa	Rorug02G0544700 Rorug02G0545100 Rorug04G0372300
rosa_samantha	Rh2AG617000 Rh2AG617300 Rh2CG597900 Rh2DG639700 Rh2DG640100 Rh2DG640400 Rh4AG010700 Rh4AG433900 Rh4BG007600 Rh4BG443100 Rh4DG441700
rosa_wichuraiana	Rw2G051090 Rw4G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	139
AciI	CCGC	1 cut(s)	4
AhlI	ACTAGT	1 cut(s)	8
AluBI	AGCT	2 cut(s)	62, 193
AluI	AGCT	2 cut(s)	62, 193
Alw26I	GTCTC	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	130
BauI	CACGAG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	33
BcuI	ACTAGT	1 cut(s)	8
BfaI	CTAG	2 cut(s)	9, 131
BfuAI	ACCTGC	1 cut(s)	139
BmsI	GCATC	2 cut(s)	55, 144
Bsa29I	ATCGAT	1 cut(s)	138
BseCI	ATCGAT	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	62
BshVI	ATCGAT	1 cut(s)	138
BsmAI	GTCTC	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	130
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	1 cut(s)	4
BspCNI	CTCAG	1 cut(s)	61
BspDI	ATCGAT	1 cut(s)	138
BspMI	ACCTGC	1 cut(s)	139
BssMI	GATC	1 cut(s)	172
BssSI	CACGAG	1 cut(s)	99
Bst2BI	CACGAG	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	48
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNSI	RCATGY	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	138
BsuTUI	ATCGAT	1 cut(s)	138
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	60
ClaI	ATCGAT	1 cut(s)	138
CviAII	CATG	2 cut(s)	35, 43
CviJI	RGCY	3 cut(s)	62, 128, 193
CviKI_1	RGCY	3 cut(s)	62, 128, 193
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	130
FaeI	CATG	2 cut(s)	38, 46
FaiI	YATR	7 cut(s)	36, 44, 74, 171, 196, 200, 204
FatI	CATG	2 cut(s)	34, 42
FriOI	GRGCYC	1 cut(s)	130
FspBI	CTAG	2 cut(s)	9, 131
Hin1II	CATG	2 cut(s)	38, 46
Hpy188I	TCNGA	2 cut(s)	51, 87
Hpy188III	TCNNGA	1 cut(s)	99
HpyAV	CCTTC	1 cut(s)	46
HpyCH4V	TGCA	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
HpyF3I	CTNAG	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	38, 46
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	2 cut(s)	134, 143
LweI	GCATC	2 cut(s)	55, 144
MaeI	CTAG	2 cut(s)	9, 131
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	1 cut(s)	167
MhlI	GDGCHC	1 cut(s)	130
MnlI	CCTC	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	154
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	2 cut(s)	38, 46
NspI	RCATGY	1 cut(s)	46
Sau3AI	GATC	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	4 cut(s)	64, 94, 153, 195
SfaNI	GCATC	2 cut(s)	55, 144
SgeI	CNNG	9 cut(s)	21, 47, 55, 71, 111, 113, 143, 161, 170
SpeI	ACTAGT	1 cut(s)	8
SsiI	CCGC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	9, 131
TaqI	TCGA	2 cut(s)	138, 187
TspDTI	ATGAA	1 cut(s)	89
XceI	RCATGY	1 cut(s)	46
XspI	CTAG	2 cut(s)	9, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.