Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000818

Physical Location & Seq

Genomic Coordinates Reverse (-)

58266009 .. 58269005

Gene Structure 2997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG443100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGCAGCCCCAGCGTCGACGAGCGTGGTGCCCCTGAACCGAACCAGGCGGGGCGGCGGCATGGTCAACGAGGACAAGCTCGAGTTCGTCACATCCGACGGCATAGAGCCCATCATGAGCTTCGATCAGATGGGCATCAAGGACGATCTCCTCCGCGGTATTTACAACTACGGCTTCGAGAAGCCCTCCGCCATCCAGCAACGGGCCGTCAGGCCCATCATTGAGGGCCGTGACGTCATTGCCCAGGCCCAGTCCGGTACCGGAAAGACCTCCATGATTGCCCTCACCGTCTGCCAAATCGTCGACACCTCCTCCAGAGAGGTTCAGGCGTTGATACTGTCTCCGACGAGGGAATTGGCGGCGCAGACAGAGAAGGTGATATTGGCAATTGGTAATTACATAAATATCCAAGCGCATTCTTGCATTGGAGGCAAAAGCGTCGGTGAGGATATTAGAAAGCTAGAGTATGGAGTTCATGTGGTGTCTGGAACTCCCGGTAGAGTCTGTGATATGATCAAGAGGAGAACTCTGCGCACTCGAGCCATTAAATTATTGATTCTCGATGAGTCTGATGAAATGTTGAGCAGAGGCTTCAAGGATCAGATTTATGATGGGATCAAGCAATTTTTTGTTGCAGTTGAAAGAGAAGAGTGGAAGTTTGATACTTTATGTGATCTTTATGATACTCTTACAATTACACAAGCTGTTATTTTCTGCAACACAAAGAGAAAGGTGGACTGGCTGACTGAAAAGATGCGATCTAATAACTTTACAGTCTCTGCAATGCATGGAGACATGCCTCAGAAGGAGCGAGATGCTATTATGAATGAGTTCAGAAATGGTACTACTCGTGTTTTGATCACAACAGATGTTTGGGCCCGGGGCCTTGATGTTCAGCAGGTGTCTTTGGTTATCAATTATGATCTTCCAAACAATCGAGAGCTATACATTCATCGAATTGGTCGTTCTGGTCGTTTTGGACGCAAGGGTGTGGCAATAAACTTTGTCAAAAGCGACGATATCAAGATTTTAAGAGATATTGAACAGTACTACAGTACCCAGATTGACGAAATGCCAATGAATGTCGCAGATTTAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009628 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0035145 GO:0036293 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0070482 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

366

Amino Acids

41.3

Weight (kDa)

6.92

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	64 - 209	4e-37	DEAD/DEAH box helicase
Helicase_C	PF00271	219 - 327	6.8e-36	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51380 AT1G51380 AT1G51380 AT1G51380 AT3G19760
fragaria_vesca	FvH4_4g36800 FvH4_4g36800 FvH4_4g36800 FvH4_6g49811 FvH4_6g49900
malus_domestica	MD09G1053900.v1.1 MD09G1189300.v1.1 MD09G1268200.v1.1 MD09G1268600.v1.1 MD09G1268800.v1.1 MD13G1006800.v1.1 MD15G1056500.v1.1 MD16G1001000.v1.1
prunus_persica	Prupe.1G346100_v2.0.a1 Prupe.3G165200_v2.0.a1
pyrus_communis	pycom111g04510 pycom16g00440
rosa_chinensis	RchiOBHm_Chr0c44g0503461 RchiOBHm_Chr0c44g0503501 RchiOBHm_Chr0c44g0503531 RchiOBHm_Chr0c44g0503561 RchiOBHm_Chr0c44g0503691 RchiOBHm_Chr0c44g0503701 RchiOBHm_Chr0c44g0503721 RchiOBHm_Chr0c44g0503751 RchiOBHm_Chr2g0169961 RchiOBHm_Chr4g0386061 RchiOBHm_Chr4g0386101 RchiOBHm_Chr4g0386151 RchiOBHm_Chr4g0386181 RchiOBHm_Chr4g0386221 RchiOBHm_Chr4g0386241 RchiOBHm_Chr4g0386301 RchiOBHm_Chr4g0386341 RchiOBHm_Chr4g0386361 RchiOBHm_Chr4g0446531
rosa_laevigata	RLG00000005651 RLG00000010170 RLG00000010175 RLG00000021914
rosa_multiflora	Rmu_sc0005526.1_g000001 Rmu_sc0005795.1_g000003 Rmu_sc0013078.1_g000019 Rmu_sc0022031.1_g000001 Rmu_ssc0000389.1_g000007
rosa_roxburghii	Rroxscaffold_5G00333840 Rroxscaffold_5G00386950
rosa_rugosa	Rorug02G0544700 Rorug02G0545100 Rorug04G0372300
rosa_samantha	Rh2AG617000 Rh2AG617300 Rh2CG597900 Rh2DG639700 Rh2DG640100 Rh2DG640400 Rh4AG010700 Rh4AG433900 Rh4BG007600 Rh4BG443100 Rh4DG441700
rosa_wichuraiana	Rw2G051090 Rw4G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	889
AatII	GACGTC	1 cut(s)	237
Acc16I	TGCGCA	1 cut(s)	533
Acc36I	ACCTGC	1 cut(s)	889
Acc65I	GGTACC	1 cut(s)	257
AccB1I	GGYRCC	2 cut(s)	28, 257
AccI	GTMKAC	2 cut(s)	17, 303
AccII	CGCG	1 cut(s)	156
AciI	CCGC	7 cut(s)	49, 54, 57, 154, 156, 189, 359
AclWI	GGATC	2 cut(s)	606, 623
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	4 cut(s)	259, 844, 1049, 1057
AfiI	CCNNNNNNNGG	1 cut(s)	202
AgsI	TTSAA	3 cut(s)	595, 641, 1043
AjnI	CCWGG	2 cut(s)	44, 243
AjuI	GAANNNNNNNTTGG	2 cut(s)	365, 397
AluBI	AGCT	5 cut(s)	79, 120, 460, 704, 943
AluI	AGCT	5 cut(s)	79, 120, 460, 704, 943
Alw26I	GTCTC	3 cut(s)	345, 781, 786
AlwI	GGATC	2 cut(s)	606, 623
AlwNI	CAGNNNCTG	1 cut(s)	779
Ama87I	CYCGRG	3 cut(s)	80, 537, 879
AoxI	GGCC	6 cut(s)	204, 212, 226, 246, 876, 883
ApaI	GGGCCC	1 cut(s)	880
ApeKI	GCWGC	1 cut(s)	5
Asp700I	GAANNNNTTC	1 cut(s)	830
Asp718I	GGTACC	1 cut(s)	257
AspLEI	GCGC	3 cut(s)	364, 415, 534
AspS9I	GGNCC	7 cut(s)	204, 213, 226, 247, 876, 877, 883
AsuC2I	CCSGG	3 cut(s)	495, 880, 881
AsuHPI	GGTGA	3 cut(s)	277, 388, 455
AvaI	CYCGRG	3 cut(s)	80, 537, 879
BaeGI	GKGCMC	2 cut(s)	33, 880
BaeI	ACNNNNGTAYC	2 cut(s)	1039, 1072
BanI	GGYRCC	2 cut(s)	28, 257
BanII	GRGCYC	2 cut(s)	111, 880
BauI	CACGAG	1 cut(s)	849
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	5 cut(s)	119, 124, 200, 224, 605
BceAI	ACGGC	4 cut(s)	115, 187, 191, 213
BcgI	CGANNNNNNTGC	4 cut(s)	10, 44, 421, 455
BciT130I	CCWGG	2 cut(s)	46, 245
BclI	TGATCA	2 cut(s)	513, 858
BcnI	CCSGG	3 cut(s)	495, 880, 881
BcoDI	GTCTC	3 cut(s)	345, 781, 786
BfaI	CTAG	1 cut(s)	461
BfmI	CTRYAG	1 cut(s)	1051
BfuAI	ACCTGC	1 cut(s)	889
BisI	GCNGC	4 cut(s)	6, 55, 58, 360
BlsI	GCNGC	4 cut(s)	7, 56, 59, 361
BmcAI	AGTACT	1 cut(s)	1049
Bme1390I	CCNGG	5 cut(s)	46, 245, 495, 880, 881
BmeT110I	CYCGRG	3 cut(s)	80, 537, 879
BmgT120I	GGNCC	7 cut(s)	204, 213, 226, 247, 876, 877, 883
BmiI	GGNNCC	4 cut(s)	30, 259, 878, 884
BmrFI	CCNGG	5 cut(s)	46, 245, 495, 880, 881
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	3 cut(s)	144, 744, 805
BmuI	ACTGGG	1 cut(s)	244
BplI	GAGNNNNNCTC	4 cut(s)	170, 202, 511, 543
BpmI	CTGGAG	1 cut(s)	298
BpuMI	CCSGG	3 cut(s)	495, 880, 881
BsaBI	GATNNNNATC	1 cut(s)	134
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	4 cut(s)	154, 243, 879, 880
BsaWI	WCCGGW	2 cut(s)	254, 260
BsaXI	ACNNNNNCTCC	4 cut(s)	296, 326, 462, 492
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse1I	ACTGG	2 cut(s)	250, 743
Bse3DI	GCAATG	2 cut(s)	237, 789
Bse8I	GATNNNNATC	1 cut(s)	134
BseBI	CCWGG	2 cut(s)	46, 245
BseDI	CCNNGG	4 cut(s)	154, 243, 879, 880
BseGI	GGATG	2 cut(s)	92, 192
BseJI	GATNNNNATC	1 cut(s)	134
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMI	GCAATG	2 cut(s)	237, 789
BseMII	CTCAG	1 cut(s)	815
BseNI	ACTGG	2 cut(s)	250, 743
BseRI	GAGGAG	3 cut(s)	140, 301, 535
BseSI	GKGCMC	2 cut(s)	33, 880
BseXI	GCAGC	1 cut(s)	17
BseYI	CCCAGC	1 cut(s)	10
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	6 cut(s)	206, 214, 228, 248, 878, 885
BshNI	GGYRCC	2 cut(s)	28, 257
BsiHKCI	CYCGRG	3 cut(s)	80, 537, 879
BsiSI	CCGG	4 cut(s)	255, 261, 495, 880
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmAI	GTCTC	3 cut(s)	345, 781, 786
BsmI	GAATGC	1 cut(s)	415
BsnI	GGCC	6 cut(s)	206, 214, 228, 248, 878, 885
BsoBI	CYCGRG	3 cut(s)	80, 537, 879
Bsp120I	GGGCCC	1 cut(s)	876
Bsp1286I	GDGCHC	3 cut(s)	33, 111, 880
Bsp143I	GATC	9 cut(s)	124, 145, 513, 598, 615, 673, 758, 858, 922
BspACI	CCGC	7 cut(s)	49, 54, 57, 154, 156, 189, 359
BspANI	GGCC	6 cut(s)	206, 214, 228, 248, 878, 885
BspCNI	CTCAG	1 cut(s)	814
BspFNI	CGCG	1 cut(s)	156
BspHI	TCATGA	1 cut(s)	114
BspLI	GGNNCC	4 cut(s)	30, 259, 878, 884
BspMI	ACCTGC	1 cut(s)	889
BspPI	GGATC	2 cut(s)	606, 623
BspT107I	GGYRCC	2 cut(s)	28, 257
BsrDI	GCAATG	2 cut(s)	237, 789
BsrI	ACTGG	2 cut(s)	250, 743
BssECI	CCNNGG	4 cut(s)	154, 243, 879, 880
BssMI	GATC	9 cut(s)	124, 145, 513, 598, 615, 673, 758, 858, 922
BssNI	GRCGYC	1 cut(s)	234
BssSI	CACGAG	1 cut(s)	849
Bst2BI	CACGAG	1 cut(s)	849
Bst2UI	CCWGG	2 cut(s)	46, 245
Bst4CI	ACNGT	5 cut(s)	289, 339, 775, 1047, 1055
Bst6I	CTCTTC	1 cut(s)	642
BstACI	GRCGYC	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	801
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	2 cut(s)	92, 192
BstFNI	CGCG	1 cut(s)	156
BstHHI	GCGC	3 cut(s)	364, 415, 534
BstKTI	GATC	9 cut(s)	127, 148, 516, 601, 618, 676, 761, 861, 925
BstMAI	GTCTC	3 cut(s)	345, 781, 786
BstMBI	GATC	9 cut(s)	124, 145, 513, 598, 615, 673, 758, 858, 922
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 429
BstNI	CCWGG	2 cut(s)	46, 245
BstNSI	RCATGY	1 cut(s)	799
BstSCI	CCNGG	5 cut(s)	44, 243, 493, 878, 879
BstSFI	CTRYAG	1 cut(s)	1051
BstSLI	GKGCMC	2 cut(s)	33, 880
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	17
BsuRI	GGCC	6 cut(s)	206, 214, 228, 248, 878, 885
BtgI	CCRYGG	1 cut(s)	154
BtsCI	GGATG	2 cut(s)	92, 192
BveI	ACCTGC	1 cut(s)	889
CaiI	CAGNNNCTG	1 cut(s)	779
CciI	TCATGA	1 cut(s)	114
CfoI	GCGC	3 cut(s)	364, 415, 534
Cfr13I	GGNCC	7 cut(s)	204, 213, 226, 247, 876, 877, 883
Cfr42I	CCGCGG	1 cut(s)	157
Cfr9I	CCCGGG	1 cut(s)	879
CseI	GACGC	3 cut(s)	3, 427, 990
Csp6I	GTAC	4 cut(s)	258, 843, 1048, 1056
CviAII	CATG	6 cut(s)	61, 115, 274, 476, 788, 796
CviQI	GTAC	4 cut(s)	258, 843, 1048, 1056
DdeI	CTNAG	1 cut(s)	801
DpnI	GATC	9 cut(s)	126, 147, 515, 600, 617, 675, 760, 860, 924
DpnII	GATC	9 cut(s)	124, 145, 513, 598, 615, 673, 758, 858, 922
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
EciI	GGCGGA	1 cut(s)	178
Eco24I	GRGCYC	2 cut(s)	111, 880
Eco32I	GATATC	1 cut(s)	1021
Eco88I	CYCGRG	3 cut(s)	80, 537, 879
EcoO109I	RGGNCCY	1 cut(s)	883
EcoRII	CCWGG	2 cut(s)	44, 243
EcoRV	GATATC	1 cut(s)	1021
EcoT22I	ATGCAT	1 cut(s)	789
EcoT38I	GRGCYC	2 cut(s)	111, 880
FaeI	CATG	6 cut(s)	64, 118, 277, 479, 791, 799
FatI	CATG	6 cut(s)	60, 114, 273, 475, 787, 795
FauI	CCCGC	1 cut(s)	42
FbaI	TGATCA	2 cut(s)	513, 858
FblI	GTMKAC	2 cut(s)	17, 303
Fnu4HI	GCNGC	4 cut(s)	6, 55, 58, 360
FokI	GGATG	2 cut(s)	79, 179
FriOI	GRGCYC	2 cut(s)	111, 880
Fsp4HI	GCNGC	4 cut(s)	6, 55, 58, 360
FspBI	CTAG	1 cut(s)	461
FspI	TGCGCA	1 cut(s)	533
GlaI	GCGC	3 cut(s)	363, 414, 533
GluI	GCNGC	4 cut(s)	6, 55, 58, 360
GsaI	CCCAGC	1 cut(s)	14
GsuI	CTGGAG	1 cut(s)	298
HaeIII	GGCC	6 cut(s)	206, 214, 228, 248, 878, 885
HapII	CCGG	4 cut(s)	255, 261, 495, 880
HgaI	GACGC	3 cut(s)	3, 427, 990
HhaI	GCGC	3 cut(s)	364, 415, 534
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	6 cut(s)	64, 118, 277, 479, 791, 799
Hin6I	GCGC	3 cut(s)	362, 413, 532
HinP1I	GCGC	3 cut(s)	362, 413, 532
HincII	GTYRAC	3 cut(s)	18, 67, 304
HindII	GTYRAC	3 cut(s)	18, 67, 304
HinfI	GANTC	3 cut(s)	501, 556, 566
HpaII	CCGG	4 cut(s)	255, 261, 495, 880
HphI	GGTGA	3 cut(s)	277, 388, 455
Hpy166II	GTNNAC	4 cut(s)	18, 67, 304, 736
Hpy188I	TCNGA	7 cut(s)	97, 129, 345, 571, 603, 804, 836
Hpy188III	TCNNGA	8 cut(s)	115, 178, 315, 486, 517, 560, 938, 1024
Hpy8I	GTNNAC	4 cut(s)	18, 67, 304, 736
Hpy99I	CGWCG	7 cut(s)	19, 22, 101, 305, 349, 443, 1019
HpyAV	CCTTC	2 cut(s)	367, 799
HpyCH4III	ACNGT	5 cut(s)	289, 339, 775, 1047, 1055
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	5 cut(s)	423, 635, 717, 782, 787
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 429
HpyF3I	CTNAG	1 cut(s)	801
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	6 cut(s)	64, 118, 277, 479, 791, 799
HspAI	GCGC	3 cut(s)	362, 413, 532
KpnI	GGTACC	1 cut(s)	261
Ksp22I	TGATCA	2 cut(s)	513, 858
KspI	CCGCGG	1 cut(s)	157
Kzo9I	GATC	9 cut(s)	124, 145, 513, 598, 615, 673, 758, 858, 922
LmnI	GCTCC	1 cut(s)	808
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	3 cut(s)	144, 744, 805
MaeI	CTAG	1 cut(s)	461
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	2 cut(s)	88, 230
MalI	GATC	9 cut(s)	126, 147, 515, 600, 617, 675, 760, 860, 924
MboI	GATC	9 cut(s)	124, 145, 513, 598, 615, 673, 758, 858, 922
MboII	GAAGA	2 cut(s)	659, 917
MfeI	CAATTG	1 cut(s)	387
MhlI	GDGCHC	3 cut(s)	33, 111, 880
MluCI	AATT	8 cut(s)	353, 387, 394, 548, 623, 693, 916, 957
MlyI	GAGTC	2 cut(s)	510, 575
MmeI	TCCRAC	2 cut(s)	120, 368
Mph1103I	ATGCAT	1 cut(s)	789
MroXI	GAANNNNTTC	1 cut(s)	830
MseI	TTAA	3 cut(s)	546, 1031, 1094
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	4 cut(s)	255, 261, 495, 880
MspR9I	CCNGG	5 cut(s)	46, 245, 495, 880, 881
MunI	CAATTG	1 cut(s)	387
Mva1269I	GAATGC	1 cut(s)	415
MvaI	CCWGG	2 cut(s)	46, 245
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	2 cut(s)	11, 429
NciI	CCSGG	3 cut(s)	495, 880, 881
NdeII	GATC	9 cut(s)	124, 145, 513, 598, 615, 673, 758, 858, 922
NlaIII	CATG	6 cut(s)	64, 118, 277, 479, 791, 799
NlaIV	GGNNCC	4 cut(s)	30, 259, 878, 884
NmuCI	GTSAC	2 cut(s)	88, 230
NsbI	TGCGCA	1 cut(s)	533
NsiI	ATGCAT	1 cut(s)	789
NspI	RCATGY	1 cut(s)	799
PaeR7I	CTCGAG	2 cut(s)	80, 537
PagI	TCATGA	1 cut(s)	114
PaqCI	CACCTGC	1 cut(s)	889
PcsI	WCGNNNNNNNCGW	3 cut(s)	93, 961, 970
PctI	GAATGC	1 cut(s)	415
PdmI	GAANNNNTTC	1 cut(s)	830
PfeI	GAWTC	1 cut(s)	556
PkrI	GCNGC	4 cut(s)	7, 56, 59, 361
PleI	GAGTC	2 cut(s)	509, 574
PpsI	GAGTC	2 cut(s)	509, 574
Psp6I	CCWGG	2 cut(s)	44, 243
PspFI	CCCAGC	1 cut(s)	10
PspGI	CCWGG	2 cut(s)	44, 243
PspN4I	GGNNCC	4 cut(s)	30, 259, 878, 884
PspOMI	GGGCCC	1 cut(s)	876
PspPI	GGNCC	7 cut(s)	204, 213, 226, 247, 876, 877, 883
PspXI	VCTCGAGB	2 cut(s)	80, 537
PstNI	CAGNNNCTG	1 cut(s)	779
RsaI	GTAC	4 cut(s)	259, 844, 1049, 1057
RsaNI	GTAC	4 cut(s)	258, 843, 1048, 1056
SacII	CCGCGG	1 cut(s)	157
SalI	GTCGAC	2 cut(s)	16, 302
SaqAI	TTAA	3 cut(s)	546, 1031, 1094
SatI	GCNGC	4 cut(s)	6, 55, 58, 360
Sau3AI	GATC	9 cut(s)	124, 145, 513, 598, 615, 673, 758, 858, 922
Sau96I	GGNCC	7 cut(s)	204, 213, 226, 247, 876, 877, 883
ScaI	AGTACT	1 cut(s)	1049
SchI	GAGTC	2 cut(s)	510, 575
ScrFI	CCNGG	5 cut(s)	46, 245, 495, 880, 881
SduI	GDGCHC	3 cut(s)	33, 111, 880
SfaNI	GCATC	3 cut(s)	144, 744, 805
SfcI	CTRYAG	1 cut(s)	1051
Sfr274I	CTCGAG	2 cut(s)	80, 537
Sfr303I	CCGCGG	1 cut(s)	157
SgrBI	CCGCGG	1 cut(s)	157
SgrDI	CGTCGACG	1 cut(s)	16
SlaI	CTCGAG	2 cut(s)	80, 537
SmaI	CCCGGG	1 cut(s)	881
SmlI	CTYRAG	2 cut(s)	80, 537
SmoI	CTYRAG	2 cut(s)	80, 537
Sse9I	AATT	8 cut(s)	353, 387, 394, 548, 623, 693, 916, 957
SsiI	CCGC	7 cut(s)	49, 54, 57, 154, 156, 189, 359
SspMI	CTAG	1 cut(s)	461
StyD4I	CCNGG	5 cut(s)	44, 243, 493, 878, 879
TaaI	ACNGT	5 cut(s)	289, 339, 775, 1047, 1055
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	9 cut(s)	17, 81, 123, 177, 303, 538, 561, 937, 955
TasI	AATT	8 cut(s)	353, 387, 394, 548, 623, 693, 916, 957
TatI	WGTACW	1 cut(s)	1047
TauI	GCSGC	3 cut(s)	57, 60, 362
TfiI	GAWTC	1 cut(s)	556
Tru1I	TTAA	3 cut(s)	546, 1031, 1094
Tru9I	TTAA	3 cut(s)	546, 1031, 1094
TseFI	GTSAC	2 cut(s)	88, 230
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	88, 230
TspDTI	ATGAA	5 cut(s)	464, 588, 839, 941, 1094
TspMI	CCCGGG	1 cut(s)	879
XceI	RCATGY	1 cut(s)	799
XhoI	CTCGAG	2 cut(s)	80, 537
XmaI	CCCGGG	1 cut(s)	879
XmiI	GTMKAC	2 cut(s)	17, 303
XmnI	GAANNNNTTC	1 cut(s)	830
XspI	CTAG	1 cut(s)	461
ZraI	GACGTC	1 cut(s)	235
ZrmI	AGTACT	1 cut(s)	1049
Zsp2I	ATGCAT	1 cut(s)	789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.