Rh2DG639700

Helicase conserved C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000818
Physical Location & Seq
Forward (+)
86794005 .. 86794322
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG639700.1

Sequence Viewer

Length: 318 bp
ATGCATGGAGACATGCCTCAGAAGGAGAGAGATGCTATTATGGAGGAGTTTCAGAAGGGTCTTTCACGAGTCCTCATCACAACTGATGTTTGGGCTCGGGGCATCGATGTTCAGCAGCTTTCGCTGGTTATCAACTACGATCTTCCAAATAATCGAGAGCTATACATACATAGGATTGGTCGTTCGGGTCGATTTGGACGAAAGGGTGTGGCAATAAACTTTGTCAAGAAAGATGATATCAGGATCTTAAGAGACATTGAACAGTACTACAGTACCCAGATTGACGAGATGCCCATGAATGTGGCTGATTTACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000166 GO:0000184 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0000578 GO:0000956 GO:0001501 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003727 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006406 GO:0006417 GO:0006448 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007028 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007308 GO:0007309 GO:0007314 GO:0007315 GO:0007316 GO:0007350 GO:0007351 GO:0007389 GO:0007610 GO:0007611 GO:0007612 GO:0008026 GO:0008104 GO:0008143 GO:0008144 GO:0008150 GO:0008152 GO:0008186 GO:0008298 GO:0008306 GO:0008358 GO:0008380 GO:0008595 GO:0009056 GO:0009057 GO:0009653 GO:0009719 GO:0009790 GO:0009792 GO:0009798 GO:0009880 GO:0009887 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009948 GO:0009952 GO:0009966 GO:0009968 GO:0009987 GO:0009994 GO:0010033 GO:0010035 GO:0010467 GO:0010468 GO:0010501 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0017148 GO:0019094 GO:0019219 GO:0019222 GO:0019439 GO:0019953 GO:0021700 GO:0022412 GO:0022414 GO:0022607 GO:0023051 GO:0023057 GO:0030154 GO:0030425 GO:0030554 GO:0031123 GO:0031124 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031503 GO:0031644 GO:0031645 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0033036 GO:0033120 GO:0034248 GO:0034249 GO:0034250 GO:0034613 GO:0034641 GO:0034655 GO:0035145 GO:0035282 GO:0035368 GO:0035613 GO:0035639 GO:0035640 GO:0036094 GO:0036477 GO:0042221 GO:0042391 GO:0042623 GO:0042886 GO:0042995 GO:0043005 GO:0043009 GO:0043021 GO:0043025 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0043933 GO:0044057 GO:0044085 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044703 GO:0044877 GO:0045184 GO:0045451 GO:0045495 GO:0045727 GO:0045893 GO:0045900 GO:0045935 GO:0045944 GO:0046483 GO:0046700 GO:0046907 GO:0048024 GO:0048026 GO:0048468 GO:0048469 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048562 GO:0048568 GO:0048583 GO:0048585 GO:0048598 GO:0048599 GO:0048609 GO:0048701 GO:0048704 GO:0048705 GO:0048706 GO:0048731 GO:0048856 GO:0048869 GO:0050657 GO:0050658 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0050804 GO:0050805 GO:0050877 GO:0050890 GO:0050896 GO:0051028 GO:0051098 GO:0051100 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051276 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0060255 GO:0060810 GO:0060811 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070035 GO:0070717 GO:0070727 GO:0070848 GO:0070887 GO:0071013 GO:0071166 GO:0071241 GO:0071310 GO:0071363 GO:0071426 GO:0071427 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072714 GO:0072715 GO:0080090 GO:0090304 GO:0090394 GO:0097159 GO:0097367 GO:0097447 GO:0097458 GO:0098815 GO:0099177 GO:0120025 GO:0120038 GO:0140098 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902415 GO:1902494 GO:1902680 GO:1903040 GO:1903311 GO:1903313 GO:1903506 GO:1903508 GO:1904569 GO:1904570 GO:1904572 GO:1904573 GO:1904574 GO:1904888 GO:1905214 GO:1905215 GO:1990089 GO:1990090 GO:1990416 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03040 map03013 map03015 map03040
Pfam Domains
Protein Families
DEAD Helicase_C

Protein Analysis

105

Amino Acids

12.28

Weight (kDa)

6.09

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Helicase_C PF00271 1 - 66 1.4e-25 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 251
AfaI GTAC 2 cut(s) 266, 274
AflII CTTAAG 1 cut(s) 247
AgsI TTSAA 1 cut(s) 260
AloI GAACNNNNNNTCC 2 cut(s) 166, 198
AluBI AGCT 2 cut(s) 118, 160
AluI AGCT 2 cut(s) 118, 160
Alw26I GTCTC 2 cut(s) 3, 246
AlwI GGATC 1 cut(s) 251
Ama87I CYCGRG 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 115
AvaI CYCGRG 1 cut(s) 96
BaeI ACNNNNGTAYC 2 cut(s) 256, 289
BanII GRGCYC 1 cut(s) 97
BauI CACGAG 1 cut(s) 66
BbvI GCAGC 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 3, 246
BfmI CTRYAG 1 cut(s) 268
BfrI CTTAAG 1 cut(s) 247
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
BmcAI AGTACT 1 cut(s) 266
BmeT110I CYCGRG 1 cut(s) 96
BmsI GCATC 3 cut(s) 22, 111, 279
Bsa29I ATCGAT 1 cut(s) 105
BseCI ATCGAT 1 cut(s) 105
BseMII CTCAG 1 cut(s) 32
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 127
BshVI ATCGAT 1 cut(s) 105
BsiHKCI CYCGRG 1 cut(s) 96
BsmAI GTCTC 2 cut(s) 3, 246
BsoBI CYCGRG 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 97
Bsp143I GATC 2 cut(s) 139, 243
BspCNI CTCAG 1 cut(s) 31
BspDI ATCGAT 1 cut(s) 105
BspPI GGATC 1 cut(s) 251
BspTI CTTAAG 1 cut(s) 247
BssMI GATC 2 cut(s) 139, 243
BssSI CACGAG 1 cut(s) 66
Bst2BI CACGAG 1 cut(s) 66
Bst4CI ACNGT 2 cut(s) 264, 272
BstAFI CTTAAG 1 cut(s) 247
BstDEI CTNAG 1 cut(s) 18
BstKTI GATC 2 cut(s) 142, 246
BstMAI GTCTC 2 cut(s) 3, 246
BstMBI GATC 2 cut(s) 139, 243
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 16
BstSFI CTRYAG 1 cut(s) 268
BstV1I GCAGC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 243
BstXI CCANNNNNNTGG 1 cut(s) 301
BstYI RGATCY 1 cut(s) 243
Bsu15I ATCGAT 1 cut(s) 105
BsuTUI ATCGAT 1 cut(s) 105
ClaI ATCGAT 1 cut(s) 105
Csp6I GTAC 2 cut(s) 265, 273
CviAII CATG 3 cut(s) 5, 13, 295
CviJI RGCY 4 cut(s) 95, 118, 160, 305
CviKI_1 RGCY 4 cut(s) 95, 118, 160, 305
CviQI GTAC 2 cut(s) 265, 273
DdeI CTNAG 1 cut(s) 18
DpnI GATC 2 cut(s) 141, 245
DpnII GATC 2 cut(s) 139, 243
Eco24I GRGCYC 1 cut(s) 97
Eco32I GATATC 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 96
EcoRV GATATC 1 cut(s) 238
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 97
FaeI CATG 3 cut(s) 8, 16, 298
FaiI YATR 8 cut(s) 6, 14, 41, 163, 167, 171, 296, 316
FatI CATG 3 cut(s) 4, 12, 294
Fnu4HI GCNGC 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 97
Fsp4HI GCNGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 116
Hin1II CATG 3 cut(s) 8, 16, 298
HinfI GANTC 1 cut(s) 69
Hpy188I TCNGA 2 cut(s) 21, 54
Hpy188III TCNNGA 4 cut(s) 66, 155, 226, 241
HpyAV CCTTC 2 cut(s) 16, 49
HpyCH4III ACNGT 2 cut(s) 264, 272
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 3 cut(s) 8, 16, 298
Kzo9I GATC 2 cut(s) 139, 243
LpnPI CCDG 3 cut(s) 110, 226, 290
Lsp1109I GCAGC 1 cut(s) 127
LweI GCATC 3 cut(s) 22, 111, 279
MalI GATC 2 cut(s) 141, 245
MboI GATC 2 cut(s) 139, 243
MboII GAAGA 1 cut(s) 134
MflI RGATCY 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 97
MlyI GAGTC 1 cut(s) 78
MnlI CCTC 3 cut(s) 27, 37, 83
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 248
MslI CAYNNNNRTG 1 cut(s) 299
MspCI CTTAAG 1 cut(s) 247
MwoI GCNNNNNNNGC 1 cut(s) 121
NdeII GATC 2 cut(s) 139, 243
NlaIII CATG 3 cut(s) 8, 16, 298
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 16
PcsI WCGNNNNNNNCGW 2 cut(s) 187, 196
PkrI GCNGC 1 cut(s) 117
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PsuI RGATCY 1 cut(s) 243
RsaI GTAC 2 cut(s) 266, 274
RsaNI GTAC 2 cut(s) 265, 273
RseI CAYNNNNRTG 1 cut(s) 299
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 2 cut(s) 139, 243
ScaI AGTACT 1 cut(s) 266
SchI GAGTC 1 cut(s) 78
SduI GDGCHC 1 cut(s) 97
SetI ASST 2 cut(s) 120, 162
SfaNI GCATC 3 cut(s) 22, 111, 279
SfcI CTRYAG 1 cut(s) 268
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
TaaI ACNGT 2 cut(s) 264, 272
TaqI TCGA 3 cut(s) 105, 154, 190
TatI WGTACW 1 cut(s) 264
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 311
Vha464I CTTAAG 1 cut(s) 247
XceI RCATGY 1 cut(s) 16
ZrmI AGTACT 1 cut(s) 266
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.