RLG00000021914

Eukaryotic initiation factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
79274074 .. 79275793
1720 bp
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UTR
Exon/CDS
Intron
RLM00000021914

Sequence Viewer

Length: 1245 bp
ATGGCAGCAATAGCAACCGCGAGAGCGAGCGTGGTTCCGATGAACCGATCGGTTCAGGGCGGCAGCAAGGTGCTGAAGGAAATGCTGGAGTTTGTGCCGTCGGATGATATAGAGCCGATCATGAGCTTCGATCAGATGAACCTCAAGGACGAGCTACTCCGAGGCATCTACAACTACGGCTTCGAGAAGCCCTCCGCCATCCAGCAAAGGGCCATCAGACCCATAATCGAGGGCCGCGACGTCATAGCTCAGGCTCAATCTGGCACTGGAAAGACCTCCATGATTGCCCTAGCTTCTTGCCAAACCGTCGACACCTCCTCCAGAGAGGTTCAGGTGTTGATATTGTCTCCAACGAGGGAGTTGGCGGCACAGACAGAGAAAGTGATACTGGCAATGGGAAACTACATGAGTATTCAAGCGCATTCCTGCATTGGAGGCAAAAGTGTGGGTGAGGATATCAGAAAGCTAGAGAACGGAGTTCAGGTGGTCTCTGGAACTCCTGGTAGAGTCCATGACATGATTCAGAGGGGAAGTCTACGCACTCGACACATCAAACTACTAATTCTTGATGAATCTGATGAGATGTTGAGCAGAGGCTTCAAGAAGAAAATTTACGAAGTCTACAGACATCTACAAGATACCCTACAAGTTTGCTTGATCTCCGCGACGCTCCCTAATGAAATTTTGGAGATGACCAACAAGTTCATGACCGATCCTATAAGGATCCTGGTTAAACGTGACGAGCTGACTTTGGAGGGAATCAAGCAATTTTTCGTTGCAGTTGAAGAAGAAGATTGGAAGTTTGATACTTTGTGCGATCTCTATGATACCCTTACGATCACACAAGCTGTTATTTTCTGCAACACAAGGCGAAAAGTGGACTGGCTTACTGAAAAGATGCGGACTAGTAACTTTGCTGTGTCTGCAATGCATGGAGACATGCCTCAGAAGGAGAGAGATGCTATTATGAAGGAGTTTCAGAAAGGTCTTTCACGAGTCCTCATCACAACTGATGTTTGGGCTCGGGGCATCGATGTTCAGCAGGTTTCGCTCGTTATCAACTACGATCTTCCAAACAATCGAGAGCTATACATTCATAGGATTGGTCGTTCAGGTCGATTTGGACGAAAGGGTGTGGCAATAAACTTTGTCAAGAACGATGATATCAGGATCTTACGAGACATTGAACAGTACTACAGTACCCAGATTGACGAGATGCCCATGAATGTGGCTGATTTACTATGA

Protein Analysis

415

Amino Acids

46.96

Weight (kDa)

6.37

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResIII PF04851 64 - 213 5.7e-07 Type III restriction enzyme, res subunit
DEAD PF00270 66 - 228 1.2e-43 DEAD/DEAH box helicase
Helicase_C PF00271 267 - 375 2.5e-34 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 243
Acc36I ACCTGC 1 cut(s) 1033
AccI GTMKAC 3 cut(s) 309, 535, 621
AccII CGCG 3 cut(s) 20, 237, 665
AciI CCGC 7 cut(s) 18, 60, 195, 235, 365, 663, 901
AclWI GGATC 4 cut(s) 707, 718, 731, 1178
AcsI RAATTY 2 cut(s) 609, 681
AcuI CTGAAG 1 cut(s) 95
AcyI GRCGYC 1 cut(s) 240
AfaI GTAC 2 cut(s) 1193, 1201
AfiI CCNNNNNNNGG 1 cut(s) 208
AgsI TTSAA 4 cut(s) 416, 601, 785, 1187
AhlI ACTAGT 1 cut(s) 905
AjnI CCWGG 2 cut(s) 499, 726
AloI GAACNNNNNNTCC 2 cut(s) 1093, 1125
AluBI AGCT 8 cut(s) 126, 154, 248, 293, 466, 745, 848, 1087
AluI AGCT 8 cut(s) 126, 154, 248, 293, 466, 745, 848, 1087
Alw26I GTCTC 4 cut(s) 351, 493, 930, 1173
AlwI GGATC 4 cut(s) 707, 718, 731, 1178
Ama87I CYCGRG 1 cut(s) 1023
AoxI GGCC 2 cut(s) 210, 232
ApeKI GCWGC 2 cut(s) 5, 63
ApoI RAATTY 2 cut(s) 609, 681
AspLEI GCGC 1 cut(s) 421
AspS9I GGNCC 2 cut(s) 210, 232
AsuHPI GGTGA 1 cut(s) 461
AvaI CYCGRG 1 cut(s) 1023
BaeI ACNNNNGTAYC 2 cut(s) 1183, 1216
BamHI GGATCC 1 cut(s) 723
BanII GRGCYC 1 cut(s) 1024
BarI GAAGNNNNNNTAC 2 cut(s) 596, 628
BauI CACGAG 1 cut(s) 993
BbvI GCAGC 2 cut(s) 17, 75
BccI CCATC 2 cut(s) 206, 221
BceAI ACGGC 2 cut(s) 82, 193
BciT130I CCWGG 2 cut(s) 501, 728
BcoDI GTCTC 4 cut(s) 351, 493, 930, 1173
BcuI ACTAGT 1 cut(s) 905
BfaI CTAG 3 cut(s) 290, 467, 906
BfmI CTRYAG 2 cut(s) 622, 1195
BfuAI ACCTGC 1 cut(s) 1033
BisI GCNGC 5 cut(s) 6, 61, 64, 235, 366
BlsI GCNGC 5 cut(s) 7, 62, 65, 236, 367
BmcAI AGTACT 1 cut(s) 1193
Bme1390I CCNGG 2 cut(s) 501, 728
BmeT110I CYCGRG 1 cut(s) 1023
BmgT120I GGNCC 2 cut(s) 210, 232
BmiI GGNNCC 2 cut(s) 36, 725
BmrFI CCNGG 2 cut(s) 501, 728
BmsI GCATC 5 cut(s) 174, 888, 949, 1038, 1206
BplI GAGNNNNNCTC 2 cut(s) 176, 208
BpmI CTGGAG 2 cut(s) 107, 304
Bpu10I CCTNAGC 1 cut(s) 249
BpuEI CTTGAG 1 cut(s) 128
Bsa29I ATCGAT 1 cut(s) 1032
BsaHI GRCGYC 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 493
BsaJI CCNNGG 1 cut(s) 160
BsaXI ACNNNNNCTCC 4 cut(s) 302, 332, 468, 498
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse1I ACTGG 3 cut(s) 271, 393, 887
Bse3DI GCAATG 2 cut(s) 399, 933
BseBI CCWGG 2 cut(s) 501, 728
BseCI ATCGAT 1 cut(s) 1032
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 2 cut(s) 109, 198
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMI GCAATG 2 cut(s) 399, 933
BseMII CTCAG 2 cut(s) 263, 959
BseNI ACTGG 3 cut(s) 271, 393, 887
BseRI GAGGAG 1 cut(s) 307
BseXI GCAGC 2 cut(s) 17, 75
Bsh1236I CGCG 3 cut(s) 20, 237, 665
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 2 cut(s) 212, 234
BshVI ATCGAT 1 cut(s) 1032
BsiEI CGRYCG 1 cut(s) 50
BsiHKCI CYCGRG 1 cut(s) 1023
BslI CCNNNNNNNGG 1 cut(s) 208
BsmAI GTCTC 4 cut(s) 351, 493, 930, 1173
BsmI GAATGC 1 cut(s) 421
BsnI GGCC 2 cut(s) 212, 234
Bso31I GGTCTC 1 cut(s) 493
BsoBI CYCGRG 1 cut(s) 1023
Bsp1286I GDGCHC 1 cut(s) 1024
BspACI CCGC 7 cut(s) 18, 60, 195, 235, 365, 663, 901
BspANI GGCC 2 cut(s) 212, 234
BspCNI CTCAG 2 cut(s) 262, 958
BspDI ATCGAT 1 cut(s) 1032
BspFNI CGCG 3 cut(s) 20, 237, 665
BspHI TCATGA 2 cut(s) 120, 705
BspLI GGNNCC 2 cut(s) 36, 725
BspMI ACCTGC 1 cut(s) 1033
BspPI GGATC 4 cut(s) 707, 718, 731, 1178
BspTNI GGTCTC 1 cut(s) 493
BsrDI GCAATG 2 cut(s) 399, 933
BsrI ACTGG 3 cut(s) 271, 393, 887
BssECI CCNNGG 1 cut(s) 160
BssNI GRCGYC 1 cut(s) 240
BssSI CACGAG 1 cut(s) 993
Bst2BI CACGAG 1 cut(s) 993
Bst2UI CCWGG 2 cut(s) 501, 728
Bst4CI ACNGT 3 cut(s) 307, 1191, 1199
BstACI GRCGYC 1 cut(s) 240
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 2 cut(s) 249, 945
BstF5I GGATG 2 cut(s) 109, 198
BstFNI CGCG 3 cut(s) 20, 237, 665
BstHHI GCGC 1 cut(s) 421
BstMAI GTCTC 4 cut(s) 351, 493, 930, 1173
BstMCI CGRYCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 4 cut(s) 11, 435, 923, 1048
BstNI CCWGG 2 cut(s) 501, 728
BstNSI RCATGY 1 cut(s) 943
BstSCI CCNGG 2 cut(s) 499, 726
BstSFI CTRYAG 2 cut(s) 622, 1195
BstUI CGCG 3 cut(s) 20, 237, 665
BstV1I GCAGC 2 cut(s) 17, 75
BstX2I RGATCY 2 cut(s) 723, 1170
BstXI CCANNNNNNTGG 1 cut(s) 1228
BstYI RGATCY 2 cut(s) 723, 1170
Bsu15I ATCGAT 1 cut(s) 1032
BsuRI GGCC 2 cut(s) 212, 234
BsuTUI ATCGAT 1 cut(s) 1032
BtsCI GGATG 2 cut(s) 109, 198
BtsIMutI CAGTG 1 cut(s) 264
BveI ACCTGC 1 cut(s) 1033
Cac8I GCNNGC 1 cut(s) 28
CciI TCATGA 2 cut(s) 120, 705
CfoI GCGC 1 cut(s) 421
Cfr13I GGNCC 2 cut(s) 210, 232
ClaI ATCGAT 1 cut(s) 1032
CseI GACGC 1 cut(s) 676
Csp6I GTAC 2 cut(s) 1192, 1200
CviAII CATG 9 cut(s) 121, 280, 406, 512, 517, 706, 932, 940, 1222
CviQI GTAC 2 cut(s) 1192, 1200
DdeI CTNAG 2 cut(s) 249, 945
EciI GGCGGA 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 1024
Eco31I GGTCTC 1 cut(s) 493
Eco32I GATATC 2 cut(s) 457, 1165
Eco57I CTGAAG 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 1023
EcoRII CCWGG 2 cut(s) 499, 726
EcoRV GATATC 2 cut(s) 457, 1165
EcoT22I ATGCAT 1 cut(s) 933
EcoT38I GRGCYC 1 cut(s) 1024
FaeI CATG 9 cut(s) 124, 283, 409, 515, 520, 709, 935, 943, 1225
FatI CATG 9 cut(s) 120, 279, 405, 511, 516, 705, 931, 939, 1221
FblI GTMKAC 3 cut(s) 309, 535, 621
Fnu4HI GCNGC 5 cut(s) 6, 61, 64, 235, 366
FokI GGATG 2 cut(s) 116, 185
FriOI GRGCYC 1 cut(s) 1024
Fsp4HI GCNGC 5 cut(s) 6, 61, 64, 235, 366
FspBI CTAG 3 cut(s) 290, 467, 906
GlaI GCGC 1 cut(s) 420
GluI GCNGC 5 cut(s) 6, 61, 64, 235, 366
GsuI CTGGAG 2 cut(s) 107, 304
HaeIII GGCC 2 cut(s) 212, 234
HgaI GACGC 1 cut(s) 676
HhaI GCGC 1 cut(s) 421
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 9 cut(s) 124, 283, 409, 515, 520, 709, 935, 943, 1225
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 5 cut(s) 507, 520, 572, 759, 996
HphI GGTGA 1 cut(s) 461
Hpy166II GTNNAC 4 cut(s) 310, 536, 622, 880
Hpy8I GTNNAC 4 cut(s) 310, 536, 622, 880
Hpy99I CGWCG 4 cut(s) 103, 242, 311, 670
HpyAV CCTTC 3 cut(s) 70, 943, 964
HpyCH4III ACNGT 3 cut(s) 307, 1191, 1199
HpyCH4IV ACGT 2 cut(s) 240, 736
HpyCH4V TGCA 5 cut(s) 429, 779, 861, 926, 931
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 435, 923, 1048
HpyF3I CTNAG 2 cut(s) 249, 945
HpySE526I ACGT 2 cut(s) 240, 736
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 9 cut(s) 124, 283, 409, 515, 520, 709, 935, 943, 1225
HspAI GCGC 1 cut(s) 419
LmnI GCTCC 1 cut(s) 675
Lsp1109I GCAGC 2 cut(s) 17, 75
LweI GCATC 5 cut(s) 174, 888, 949, 1038, 1206
MaeI CTAG 3 cut(s) 290, 467, 906
MaeII ACGT 2 cut(s) 240, 736
MaeIII GTNAC 2 cut(s) 737, 908
MboII GAAGA 5 cut(s) 616, 797, 800, 803, 1061
MflI RGATCY 2 cut(s) 723, 1170
MhlI GDGCHC 1 cut(s) 1024
MluCI AATT 4 cut(s) 561, 609, 681, 767
MlyI GAGTC 2 cut(s) 516, 1005
MmeI TCCRAC 2 cut(s) 81, 374
Mph1103I ATGCAT 1 cut(s) 933
MseI TTAA 1 cut(s) 732
MslI CAYNNNNRTG 1 cut(s) 1226
MspR9I CCNGG 2 cut(s) 501, 728
Mva1269I GAATGC 1 cut(s) 421
MvaI CCWGG 2 cut(s) 501, 728
MvnI CGCG 3 cut(s) 20, 237, 665
MwoI GCNNNNNNNGC 4 cut(s) 11, 435, 923, 1048
NlaIII CATG 9 cut(s) 124, 283, 409, 515, 520, 709, 935, 943, 1225
NlaIV GGNNCC 2 cut(s) 36, 725
NmuCI GTSAC 1 cut(s) 737
NsiI ATGCAT 1 cut(s) 933
NspI RCATGY 1 cut(s) 943
PagI TCATGA 2 cut(s) 120, 705
PcsI WCGNNNNNNNCGW 3 cut(s) 234, 1114, 1123
PctI GAATGC 1 cut(s) 421
PfeI GAWTC 3 cut(s) 520, 572, 759
PkrI GCNGC 5 cut(s) 7, 62, 65, 236, 367
Ple19I CGATCG 1 cut(s) 50
PleI GAGTC 2 cut(s) 515, 1004
PpsI GAGTC 2 cut(s) 515, 1004
Psp6I CCWGG 2 cut(s) 499, 726
PspGI CCWGG 2 cut(s) 499, 726
PspN4I GGNNCC 2 cut(s) 36, 725
PspPI GGNCC 2 cut(s) 210, 232
PsuI RGATCY 2 cut(s) 723, 1170
PvuI CGATCG 1 cut(s) 50
RsaI GTAC 2 cut(s) 1193, 1201
RsaNI GTAC 2 cut(s) 1192, 1200
RseI CAYNNNNRTG 1 cut(s) 1226
SalI GTCGAC 1 cut(s) 308
SaqAI TTAA 1 cut(s) 732
SatI GCNGC 5 cut(s) 6, 61, 64, 235, 366
Sau96I GGNCC 2 cut(s) 210, 232
ScaI AGTACT 1 cut(s) 1193
SchI GAGTC 2 cut(s) 516, 1005
ScrFI CCNGG 2 cut(s) 501, 728
SduI GDGCHC 1 cut(s) 1024
SfaNI GCATC 5 cut(s) 174, 888, 949, 1038, 1206
SfcI CTRYAG 2 cut(s) 622, 1195
SmiMI CAYNNNNRTG 1 cut(s) 1226
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SpeI ACTAGT 1 cut(s) 905
Sse9I AATT 4 cut(s) 561, 609, 681, 767
SsiI CCGC 7 cut(s) 18, 60, 195, 235, 365, 663, 901
SspMI CTAG 3 cut(s) 290, 467, 906
StyD4I CCNGG 2 cut(s) 499, 726
TaaI ACNGT 3 cut(s) 307, 1191, 1199
TaiI ACGT 2 cut(s) 243, 739
TaqI TCGA 8 cut(s) 129, 183, 228, 309, 544, 1032, 1081, 1117
TaqII GACCGA 1 cut(s) 725
TasI AATT 4 cut(s) 561, 609, 681, 767
TatI WGTACW 1 cut(s) 1191
TauI GCSGC 3 cut(s) 63, 237, 368
TfiI GAWTC 3 cut(s) 520, 572, 759
Tru1I TTAA 1 cut(s) 732
Tru9I TTAA 1 cut(s) 732
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 737
TseI GCWGC 2 cut(s) 5, 63
Tsp45I GTSAC 1 cut(s) 737
TspDTI ATGAA 8 cut(s) 56, 152, 585, 693, 694, 983, 1085, 1238
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 1 cut(s) 271
XapI RAATTY 2 cut(s) 609, 681
XceI RCATGY 1 cut(s) 943
XmiI GTMKAC 3 cut(s) 309, 535, 621
XspI CTAG 3 cut(s) 290, 467, 906
ZraI GACGTC 1 cut(s) 241
ZrmI AGTACT 1 cut(s) 1193
Zsp2I ATGCAT 1 cut(s) 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.