AT1G51930

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002220
Physical Location & Seq
Reverse (-)
19294838 .. 19295236
399 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G51930.1

Sequence Viewer

Length: 399 bp
ATGGATACTATTGACGAAATTCTCATTGGTTTCTCCATCATCGGCTTGATCGTCATCGTGATTGCTAACTGTTGCGACAATATAGATCCCCCTCCCACGAGATTACCTCCCGAGACAATCCATCAAACTGTACAGCCTCAACAAGACATTGAAACCGGACAGAGCAAAGCCCTAGTGTTCAAAGATATCAAAGAAGAAGAAGGAGGAAGAGAAGAAGAAGGTGGTGGTAAACGTTTTTGTCCAATTTGTTTGGAAGAGTACGAGGATGATCATCAGATTAGGCGTTTAAGAAACTGTGGACATGTTTTTCATCTTTTGTGTATTGATTCTTGGCTTACACAGAAACAAAACTGTCCAAGTTGTCGCCGTTCTGTTGATTTGATGAGTTTAGGTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

132

Amino Acids

14.93

Weight (kDa)

4.8

Isoelectric Point (pI)

79.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 79 - 122 8.1e-09 RING-H2 zinc finger domain
zf-RING_2 PF13639 80 - 122 1.4e-13 Ring finger domain
zf-C3HC4_2 PF13923 80 - 121 1.4e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 80 - 119 3.4e-09 RING-type zinc-finger
zf-C3HC4 PF00097 80 - 121 6.5e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 80 - 108 2e-07 RING-like zinc finger
zf-RING_5 PF14634 80 - 123 8.4e-07 zinc-RING finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 232
AclWI GGATC 1 cut(s) 80
AcsI RAATTY 1 cut(s) 18
AfaI GTAC 2 cut(s) 132, 260
AflIII ACRYGT 1 cut(s) 301
AgsI TTSAA 2 cut(s) 152, 181
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 110
ApoI RAATTY 1 cut(s) 18
AvaI CYCGRG 1 cut(s) 110
BauI CACGAG 1 cut(s) 97
BccI CCATC 2 cut(s) 44, 129
BceAI ACGGC 1 cut(s) 351
BclI TGATCA 1 cut(s) 268
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 1 cut(s) 173
BmeT110I CYCGRG 1 cut(s) 110
BplI GAGNNNNNCTC 2 cut(s) 91, 123
BsaBI GATNNNNATC 2 cut(s) 53, 270
BsaWI WCCGGW 1 cut(s) 155
Bse8I GATNNNNATC 2 cut(s) 53, 270
BseGI GGATG 1 cut(s) 271
BseJI GATNNNNATC 2 cut(s) 53, 270
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 107
BsoBI CYCGRG 1 cut(s) 110
Bsp1407I TGTACA 1 cut(s) 130
Bsp143I GATC 3 cut(s) 48, 85, 268
BspPI GGATC 1 cut(s) 80
BsrGI TGTACA 1 cut(s) 130
BssMI GATC 3 cut(s) 48, 85, 268
BssSI CACGAG 1 cut(s) 97
Bst2BI CACGAG 1 cut(s) 97
Bst4CI ACNGT 4 cut(s) 71, 130, 296, 353
Bst6I CTCTTC 2 cut(s) 202, 249
BstAUI TGTACA 1 cut(s) 130
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 3 cut(s) 51, 88, 271
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 3 cut(s) 48, 85, 268
BstNSI RCATGY 1 cut(s) 305
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BtsCI GGATG 1 cut(s) 271
Csp6I GTAC 2 cut(s) 131, 259
CviAII CATG 1 cut(s) 302
CviJI RGCY 4 cut(s) 45, 136, 170, 334
CviKI_1 RGCY 4 cut(s) 45, 136, 170, 334
CviQI GTAC 2 cut(s) 131, 259
DpnI GATC 3 cut(s) 50, 87, 270
DpnII GATC 3 cut(s) 48, 85, 268
Eam1104I CTCTTC 2 cut(s) 202, 249
EarI CTCTTC 2 cut(s) 202, 249
Eco32I GATATC 1 cut(s) 187
Eco88I CYCGRG 1 cut(s) 110
EcoRV GATATC 1 cut(s) 187
FaeI CATG 1 cut(s) 305
FaiI YATR 2 cut(s) 83, 303
FatI CATG 1 cut(s) 301
FbaI TGATCA 1 cut(s) 268
FokI GGATG 1 cut(s) 278
FspBI CTAG 1 cut(s) 173
HapII CCGG 1 cut(s) 156
Hin1II CATG 1 cut(s) 305
HinfI GANTC 1 cut(s) 326
HpaII CCGG 1 cut(s) 156
Hpy166II GTNNAC 2 cut(s) 230, 299
Hpy188I TCNGA 1 cut(s) 276
Hpy188III TCNNGA 2 cut(s) 58, 110
Hpy8I GTNNAC 2 cut(s) 230, 299
HpyAV CCTTC 2 cut(s) 194, 212
HpyCH4III ACNGT 4 cut(s) 71, 130, 296, 353
HpyCH4IV ACGT 1 cut(s) 232
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 1 cut(s) 305
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 3 cut(s) 48, 85, 268
LpnPI CCDG 1 cut(s) 169
MaeI CTAG 1 cut(s) 173
MaeII ACGT 1 cut(s) 232
MalI GATC 3 cut(s) 50, 87, 270
MboI GATC 3 cut(s) 48, 85, 268
MboII GAAGA 6 cut(s) 206, 209, 219, 224, 227, 266
MflI RGATCY 1 cut(s) 85
MluCI AATT 2 cut(s) 18, 243
MnlI CCTC 5 cut(s) 102, 117, 147, 197, 256
MseI TTAA 1 cut(s) 287
MspI CCGG 1 cut(s) 156
NdeII GATC 3 cut(s) 48, 85, 268
NlaIII CATG 1 cut(s) 305
NspI RCATGY 1 cut(s) 305
PciI ACATGT 1 cut(s) 301
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PfeI GAWTC 1 cut(s) 326
PscI ACATGT 1 cut(s) 301
Psp1406I AACGTT 1 cut(s) 232
PsuI RGATCY 1 cut(s) 85
RsaI GTAC 2 cut(s) 132, 260
RsaNI GTAC 2 cut(s) 131, 259
SaqAI TTAA 1 cut(s) 287
Sau3AI GATC 3 cut(s) 48, 85, 268
SetI ASST 4 cut(s) 109, 223, 235, 394
Sse9I AATT 2 cut(s) 18, 243
SspMI CTAG 1 cut(s) 173
TaaI ACNGT 4 cut(s) 71, 130, 296, 353
TaiI ACGT 1 cut(s) 235
TasI AATT 2 cut(s) 18, 243
TatI WGTACW 1 cut(s) 130
TfiI GAWTC 1 cut(s) 326
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TspDTI ATGAA 1 cut(s) 299
XapI RAATTY 1 cut(s) 18
XceI RCATGY 1 cut(s) 305
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.