Rh2AG068400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002220
Physical Location & Seq
Forward (+)
5681528 .. 5681884
357 bp
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UTR
Exon/CDS
Intron
Rh2AG068400.1

Sequence Viewer

Length: 357 bp
ATGGCAGAGAGTACAATTCTTAATTGTTTGTGTATAATATGCACCCCGTTTGCATTGTGTTTCATGATAATTCGCAGTTGTTTTATTTCAATATGTAGTTGTTTCAAGAATAGCACTCATGAAACAGAGGAAGATATTGGATCCGGCCAGGATCAGAAAGTTCAGAAACTCCACCATCACAGGAGCCGAGTAACAATGTCAATGTTGATGCATAAACAGCATAGCAGGATTGGAACCAATGCTATGAAGCCTTCGAATATCGAATGGAAGTTGTTAATGGAACTGGCAGCTGTATTGGTGATCAGTGTAGTATTTGCCAGGAGAAGTTTGAGGAAGACGAAGAAGATGAGTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.43

Weight (kDa)

9.43

Isoelectric Point (pI)

74.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 135, 148, 159
AcoI YGGCCR 1 cut(s) 145
AfaI GTAC 1 cut(s) 13
AgsI TTSAA 2 cut(s) 90, 106
AjnI CCWGG 2 cut(s) 147, 317
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
AlwI GGATC 3 cut(s) 135, 148, 159
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 310
AsuII TTCGAA 1 cut(s) 254
BamHI GGATCC 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 341
BbvI GCAGC 1 cut(s) 299
BccI CCATC 1 cut(s) 183
BciT130I CCWGG 2 cut(s) 149, 319
BclI TGATCA 1 cut(s) 300
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
Bme1390I CCNGG 2 cut(s) 149, 319
BmiI GGNNCC 3 cut(s) 142, 185, 235
BmrFI CCNGG 2 cut(s) 149, 319
BmsI GCATC 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 341
Bpu14I TTCGAA 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 288
BseBI CCWGG 2 cut(s) 149, 319
BseNI ACTGG 1 cut(s) 288
BseXI GCAGC 1 cut(s) 299
BshFI GGCC 1 cut(s) 147
BsiSI CCGG 1 cut(s) 144
BsnI GGCC 1 cut(s) 147
Bsp119I TTCGAA 1 cut(s) 254
Bsp143I GATC 3 cut(s) 140, 151, 300
BspANI GGCC 1 cut(s) 147
BspHI TCATGA 2 cut(s) 63, 118
BspLI GGNNCC 3 cut(s) 142, 185, 235
BspPI GGATC 3 cut(s) 135, 148, 159
BspT104I TTCGAA 1 cut(s) 254
BsrI ACTGG 1 cut(s) 288
BssMI GATC 3 cut(s) 140, 151, 300
Bst2UI CCWGG 2 cut(s) 149, 319
BstBI TTCGAA 1 cut(s) 254
BstKTI GATC 3 cut(s) 143, 154, 303
BstMBI GATC 3 cut(s) 140, 151, 300
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNI CCWGG 2 cut(s) 149, 319
BstSCI CCNGG 2 cut(s) 147, 317
BstV1I GCAGC 1 cut(s) 299
BstV2I GAAGAC 1 cut(s) 341
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BsuRI GGCC 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 310
CciI TCATGA 2 cut(s) 63, 118
Csp6I GTAC 1 cut(s) 12
CviAII CATG 2 cut(s) 64, 119
CviJI RGCY 4 cut(s) 147, 186, 250, 290
CviKI_1 RGCY 4 cut(s) 147, 186, 250, 290
CviQI GTAC 1 cut(s) 12
DpnI GATC 3 cut(s) 142, 153, 302
DpnII GATC 3 cut(s) 140, 151, 300
EaeI YGGCCR 1 cut(s) 145
EcoRII CCWGG 2 cut(s) 147, 317
EcoT22I ATGCAT 1 cut(s) 213
FaeI CATG 2 cut(s) 67, 122
FaiI YATR 8 cut(s) 35, 40, 65, 94, 120, 213, 222, 245
FatI CATG 2 cut(s) 63, 118
FbaI TGATCA 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 288
Fsp4HI GCNGC 1 cut(s) 288
GluI GCNGC 1 cut(s) 288
HaeIII GGCC 1 cut(s) 147
HapII CCGG 1 cut(s) 144
Hin1II CATG 2 cut(s) 67, 122
HpaII CCGG 1 cut(s) 144
HphI GGTGA 1 cut(s) 310
Hpy188I TCNGA 2 cut(s) 156, 165
Hpy188III TCNNGA 3 cut(s) 64, 106, 119
HpyAV CCTTC 1 cut(s) 261
HpyCH4V TGCA 3 cut(s) 42, 53, 211
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
Hsp92II CATG 2 cut(s) 67, 122
Ksp22I TGATCA 1 cut(s) 300
Kzo9I GATC 3 cut(s) 140, 151, 300
LmnI GCTCC 1 cut(s) 183
LpnPI CCDG 8 cut(s) 134, 157, 161, 166, 211, 269, 304, 331
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 1 cut(s) 198
MaeIII GTNAC 1 cut(s) 190
MalI GATC 3 cut(s) 142, 153, 302
MboI GATC 3 cut(s) 140, 151, 300
MboII GAAGA 4 cut(s) 143, 346, 352, 355
MflI RGATCY 1 cut(s) 140
MluCI AATT 3 cut(s) 15, 22, 69
MnlI CCTC 2 cut(s) 121, 324
Mph1103I ATGCAT 1 cut(s) 213
MseI TTAA 2 cut(s) 21, 275
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 2 cut(s) 149, 319
MvaI CCWGG 2 cut(s) 149, 319
MwoI GCNNNNNNNGC 1 cut(s) 217
NdeII GATC 3 cut(s) 140, 151, 300
NlaIII CATG 2 cut(s) 67, 122
NlaIV GGNNCC 3 cut(s) 142, 185, 235
NmeAIII GCCGAG 1 cut(s) 212
NsiI ATGCAT 1 cut(s) 213
NspV TTCGAA 1 cut(s) 254
PagI TCATGA 2 cut(s) 63, 118
PkrI GCNGC 1 cut(s) 289
Psp6I CCWGG 2 cut(s) 147, 317
PspGI CCWGG 2 cut(s) 147, 317
PspN4I GGNNCC 3 cut(s) 142, 185, 235
PsuI RGATCY 1 cut(s) 140
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 21, 275
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 3 cut(s) 140, 151, 300
ScrFI CCNGG 2 cut(s) 149, 319
SetI ASST 1 cut(s) 292
SfaNI GCATC 1 cut(s) 198
SfuI TTCGAA 1 cut(s) 254
Sse9I AATT 3 cut(s) 15, 22, 69
StyD4I CCNGG 2 cut(s) 147, 317
TaqI TCGA 2 cut(s) 254, 261
TasI AATT 3 cut(s) 15, 22, 69
TatI WGTACW 1 cut(s) 11
Tru1I TTAA 2 cut(s) 21, 275
Tru9I TTAA 2 cut(s) 21, 275
TscAI CASTG 1 cut(s) 310
TseI GCWGC 1 cut(s) 287
TspDTI ATGAA 3 cut(s) 52, 135, 260
TspRI CASTG 1 cut(s) 310
Zsp2I ATGCAT 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.