Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002220

Physical Location & Seq

Genomic Coordinates Reverse (-)

86871594 .. 86872022

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00149220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCATCCGTTTCACCCCGGTCTGGTTTTTGTAGTGGTGGTCGCAGTCCTTCTCTGTATTCCATGTCGAGCCGTTATCTACATCTACAAGAAGATGAACCGTCTTGGAGTTGATGAAGAAATTCATGATATTGAAACCGGCACGCTACCAACAACTCCACCACAAACAGTGCAGCAACAGAAGGCCCAAAGGGTTGAATCTTATGAAATTTTTCATCACCGAAAGGATGTGGAAGCTGTTGGATTTCACAGCGGAGATTGTGTTATTTGTTTGGGAGAGTTTGAGGAAGACGAAGAGTGCGCGATGCTTAAGAAATGTAAGCACACGTACCACCGTGCCTGCATTGATAAGGTGAAAGAAGATTCGTGTCCGCTTTGTCGTCATAGTATCGATGTGAAAATAGAAAAACCTAGCAAATTGTTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

142

Amino Acids

16.28

Weight (kDa)

6.29

Isoelectric Point (pI)

51.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	86 - 127	1.6e-10	Ring finger domain
zf-RING_11	PF17123	86 - 115	1.8e-08	RING-like zinc finger
zf-RING_5	PF14634	86 - 128	2.7e-07	zinc-RING finger domain
zf-C3HC4_2	PF13923	87 - 126	7.3e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51930 AT5G41430 AT5G41440 AT5G41450
fragaria_vesca	FvH4_1g06590 FvH4_1g06600
prunus_persica	Prupe.6G077000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092061 RchiOBHm_Chr2g0092331
rosa_laevigata	RLG00000016274 RLG00000016298 RLG00000016299 RLG00000016300
rosa_multiflora	Rmu_sc0000524.1_g000007 Rmu_sc0003289.1_g000010 Rmu_sc0003289.1_g000011 Rmu_sc0003289.1_g000012
rosa_roxburghii	Rroxscaffold_2G00149220 Rroxscaffold_2G00149230 Rroxscaffold_2G00149240 Rroxscaffold_2G00149480 Rroxscaffold_2G00149500
rosa_rugosa	Rorug02G0022800 Rorug02G0024800 Rorug02G0024800 Rorug02G0024900
rosa_samantha	Rh2AG068400 Rh2AG068500 Rh2AG070800 Rh2AG070900 Rh2BG067700 Rh2BG070300 Rh2BG070400 Rh2BG070500 Rh2CG069000 Rh2CG071500 Rh2CG071800 Rh2CG071900 Rh2DG067300 Rh2DG069300 Rh2DG069400
rosa_wichuraiana	Rw2G006140 Rw2G006150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	302
AciI	CCGC	2 cut(s)	252, 371
AcsI	RAATTY	2 cut(s)	120, 207
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	22
AflII	CTTAAG	1 cut(s)	308
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	2 cut(s)	134, 197
AluBI	AGCT	1 cut(s)	236
AluI	AGCT	1 cut(s)	236
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	1 cut(s)	172
ApoI	RAATTY	2 cut(s)	120, 207
Asp700I	GAANNNNTTC	2 cut(s)	120, 210
AspLEI	GCGC	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	184
AsuC2I	CCSGG	1 cut(s)	18
AsuHPI	GGTGA	3 cut(s)	5, 209, 364
BbsI	GAAGAC	1 cut(s)	294
BbvI	GCAGC	1 cut(s)	184
BceAI	ACGGC	1 cut(s)	56
BcnI	CCSGG	1 cut(s)	18
BfaI	CTAG	1 cut(s)	411
BfrI	CTTAAG	1 cut(s)	308
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
Bme1390I	CCNGG	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	2 cut(s)	13, 294
BpiI	GAAGAC	1 cut(s)	294
BpuMI	CCSGG	1 cut(s)	18
Bsa29I	ATCGAT	1 cut(s)	390
BsaAI	YACGTR	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	16
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse118I	RCCGGY	1 cut(s)	137
BseCI	ATCGAT	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	16
BseGI	GGATG	2 cut(s)	4, 232
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseXI	GCAGC	1 cut(s)	184
BsgI	GTGCAG	1 cut(s)	191
Bsh1236I	CGCG	1 cut(s)	302
BshFI	GGCC	1 cut(s)	185
BshVI	ATCGAT	1 cut(s)	390
BsiSI	CCGG	2 cut(s)	18, 138
BslI	CCNNNNNNNGG	1 cut(s)	22
BsnI	GGCC	1 cut(s)	185
BspACI	CCGC	2 cut(s)	252, 371
BspANI	GGCC	1 cut(s)	185
BspDI	ATCGAT	1 cut(s)	390
BspFNI	CGCG	1 cut(s)	302
BspHI	TCATGA	1 cut(s)	124
BspTI	CTTAAG	1 cut(s)	308
BsrFI	RCCGGY	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	16
Bst4CI	ACNGT	3 cut(s)	101, 169, 335
Bst6I	CTCTTC	1 cut(s)	288
BstAFI	CTTAAG	1 cut(s)	308
BstBAI	YACGTR	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	143, 340
BstF5I	GGATG	2 cut(s)	4, 232
BstFNI	CGCG	1 cut(s)	302
BstHHI	GCGC	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	16
BstUI	CGCG	1 cut(s)	302
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	294
Bsu15I	ATCGAT	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	185
BsuTUI	ATCGAT	1 cut(s)	390
BtgZI	GCGATG	1 cut(s)	317
BtsCI	GGATG	2 cut(s)	4, 232
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	2 cut(s)	143, 340
CciI	TCATGA	1 cut(s)	124
CfoI	GCGC	1 cut(s)	302
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	184
ClaI	ATCGAT	1 cut(s)	390
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	2 cut(s)	63, 125
CviJI	RGCY	3 cut(s)	71, 185, 236
CviKI_1	RGCY	3 cut(s)	71, 185, 236
CviQI	GTAC	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	66, 128
FaiI	YATR	4 cut(s)	64, 126, 204, 384
FatI	CATG	2 cut(s)	62, 124
Fnu4HI	GCNGC	1 cut(s)	173
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	173
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	1 cut(s)	173
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	2 cut(s)	18, 138
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	2 cut(s)	66, 128
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HinfI	GANTC	2 cut(s)	197, 362
HpaII	CCGG	2 cut(s)	18, 138
HphI	GGTGA	3 cut(s)	5, 209, 364
Hpy188III	TCNNGA	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	59, 175
HpyCH4III	ACNGT	3 cut(s)	101, 169, 335
HpyCH4IV	ACGT	1 cut(s)	326
HpyCH4V	TGCA	3 cut(s)	4, 172, 342
HpySE526I	ACGT	1 cut(s)	326
Hsp92II	CATG	2 cut(s)	66, 128
HspAI	GCGC	1 cut(s)	300
LpnPI	CCDG	4 cut(s)	8, 31, 151, 352
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	2 cut(s)	13, 294
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	1 cut(s)	326
MboII	GAAGA	5 cut(s)	103, 128, 299, 305, 371
MluCI	AATT	3 cut(s)	120, 207, 416
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	1 cut(s)	277
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	120, 210
MseI	TTAA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	252
MspCI	CTTAAG	1 cut(s)	308
MspI	CCGG	2 cut(s)	18, 138
MspR9I	CCNGG	1 cut(s)	18
MvnI	CGCG	1 cut(s)	302
NciI	CCSGG	1 cut(s)	18
NlaIII	CATG	2 cut(s)	66, 128
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	124
PdmI	GAANNNNTTC	2 cut(s)	120, 210
PfeI	GAWTC	2 cut(s)	197, 362
PkrI	GCNGC	1 cut(s)	174
Ppu21I	YACGTR	1 cut(s)	327
PspPI	GGNCC	1 cut(s)	184
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	1 cut(s)	173
Sau96I	GGNCC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	18
SetI	ASST	4 cut(s)	238, 329, 354, 412
SfaNI	GCATC	2 cut(s)	13, 294
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	3 cut(s)	120, 207, 416
SsiI	CCGC	2 cut(s)	252, 371
SspMI	CTAG	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	16
TaaI	ACNGT	3 cut(s)	101, 169, 335
TaiI	ACGT	1 cut(s)	329
TaqI	TCGA	2 cut(s)	67, 390
TasI	AATT	3 cut(s)	120, 207, 416
TfiI	GAWTC	2 cut(s)	197, 362
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	174
TseI	GCWGC	1 cut(s)	172
TspDTI	ATGAA	5 cut(s)	110, 113, 129, 203, 219
TspRI	CASTG	1 cut(s)	174
Vha464I	CTTAAG	1 cut(s)	308
XapI	RAATTY	2 cut(s)	120, 207
XmnI	GAANNNNTTC	2 cut(s)	120, 210
XspI	CTAG	1 cut(s)	411
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.