Rw2G006140

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0002220
Physical Location & Seq
Reverse (-)
5943645 .. 5945761
2117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G006140.1

Sequence Viewer

Length: 390 bp
ATGGCTCCATTTTACTATCCTCCATACTTCTTTTGTAAAGCGGTCTCATATTGTTTCAAGAAGATGAAGACGTGTCTTGGAGTTGATGAAGAAATCCATGATATTGAAACCGGCACGCTACCAACAACAACTTCACCACAACCAAGACCAGCAGTGCAGCAACAGAAGCAGCAGAAGGCCGAAAGGATTGAATCTTATGAAATTTTTCATCACCGAAAGGATGTGGAAGCAGTTGGATTTCACAGCAGACAGTGTGTTATTTGTTTGGGAGAGTTTGAGGAAGATGACGAATGCGCTATGCTTAAGAAATGTAAGCACACGTACCACCGTGACTGCATTGATAAGGTGAAGACTCACCTATCCCTCAACAACATACATTTTAATCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

129

Amino Acids

15.13

Weight (kDa)

6.69

Isoelectric Point (pI)

62.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_11 PF17123 84 - 113 2e-08 RING-like zinc finger
zf-RING_2 PF13639 84 - 118 1.2e-08 Ring finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 41
AcsI RAATTY 1 cut(s) 201
AfaI GTAC 1 cut(s) 323
AflII CTTAAG 1 cut(s) 302
AflIII ACRYGT 2 cut(s) 71, 318
AgsI TTSAA 3 cut(s) 58, 107, 191
AjiI CACGTC 1 cut(s) 72
AjuI GAANNNNNNNTTGG 2 cut(s) 115, 147
Alw26I GTCTC 1 cut(s) 49
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 2 cut(s) 157, 169
ApoI RAATTY 1 cut(s) 201
Asp700I GAANNNNTTC 1 cut(s) 204
AspLEI GCGC 1 cut(s) 296
AsuHPI GGTGA 4 cut(s) 126, 203, 347, 358
BbsI GAAGAC 2 cut(s) 74, 356
BbvI GCAGC 2 cut(s) 169, 181
BcoDI GTCTC 1 cut(s) 49
BfrI CTTAAG 1 cut(s) 302
BisI GCNGC 2 cut(s) 158, 170
BlsI GCNGC 2 cut(s) 159, 171
BmgBI CACGTC 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 6
BpiI GAAGAC 2 cut(s) 74, 356
BsaAI YACGTR 1 cut(s) 321
BsaI GGTCTC 1 cut(s) 49
Bse118I RCCGGY 1 cut(s) 110
BseGI GGATG 1 cut(s) 226
BseXI GCAGC 2 cut(s) 169, 181
BsgI GTGCAG 1 cut(s) 176
BshFI GGCC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 111
BsmAI GTCTC 1 cut(s) 49
BsmI GAATGC 1 cut(s) 296
BsnI GGCC 1 cut(s) 179
Bso31I GGTCTC 1 cut(s) 49
BspACI CCGC 1 cut(s) 41
BspANI GGCC 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 6
BspTI CTTAAG 1 cut(s) 302
BspTNI GGTCTC 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 110
Bst4CI ACNGT 2 cut(s) 252, 329
BstAFI CTTAAG 1 cut(s) 302
BstBAI YACGTR 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 116
BstF5I GGATG 1 cut(s) 226
BstHHI GCGC 1 cut(s) 296
BstMAI GTCTC 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstV1I GCAGC 2 cut(s) 169, 181
BstV2I GAAGAC 2 cut(s) 74, 356
BsuRI GGCC 1 cut(s) 179
BtrI CACGTC 1 cut(s) 72
BtsCI GGATG 1 cut(s) 226
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 2 cut(s) 159, 257
Cac8I GCNNGC 1 cut(s) 116
CfoI GCGC 1 cut(s) 296
Cfr10I RCCGGY 1 cut(s) 110
Csp6I GTAC 1 cut(s) 322
CviAII CATG 1 cut(s) 98
CviJI RGCY 2 cut(s) 5, 179
CviKI_1 RGCY 2 cut(s) 5, 179
CviQI GTAC 1 cut(s) 322
Eco31I GGTCTC 1 cut(s) 49
FaeI CATG 1 cut(s) 101
FaiI YATR 7 cut(s) 25, 49, 99, 198, 299, 374, 388
FatI CATG 1 cut(s) 97
Fnu4HI GCNGC 2 cut(s) 158, 170
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 2 cut(s) 158, 170
GlaI GCGC 1 cut(s) 295
GluI GCNGC 2 cut(s) 158, 170
HaeIII GGCC 1 cut(s) 179
HapII CCGG 1 cut(s) 111
HhaI GCGC 1 cut(s) 296
Hin1II CATG 1 cut(s) 101
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HinfI GANTC 2 cut(s) 191, 352
HpaII CCGG 1 cut(s) 111
HphI GGTGA 4 cut(s) 126, 203, 347, 358
Hpy188III TCNNGA 1 cut(s) 58
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 2 cut(s) 252, 329
HpyCH4IV ACGT 2 cut(s) 71, 320
HpyCH4V TGCA 2 cut(s) 157, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpySE526I ACGT 2 cut(s) 71, 320
Hsp92II CATG 1 cut(s) 101
HspAI GCGC 1 cut(s) 294
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 2 cut(s) 124, 162
Lsp1109I GCAGC 2 cut(s) 169, 181
MaeII ACGT 2 cut(s) 71, 320
MaeIII GTNAC 1 cut(s) 329
MboII GAAGA 5 cut(s) 73, 79, 101, 293, 361
MluCI AATT 1 cut(s) 201
MlyI GAGTC 1 cut(s) 346
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 3 cut(s) 30, 271, 374
MroXI GAANNNNTTC 1 cut(s) 204
MseI TTAA 2 cut(s) 303, 381
MspCI CTTAAG 1 cut(s) 302
MspI CCGG 1 cut(s) 111
Mva1269I GAATGC 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 166
NlaIII CATG 1 cut(s) 101
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 329
PctI GAATGC 1 cut(s) 296
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 2 cut(s) 159, 171
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
Ppu21I YACGTR 1 cut(s) 321
PspN4I GGNNCC 1 cut(s) 6
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SaqAI TTAA 2 cut(s) 303, 381
SatI GCNGC 2 cut(s) 158, 170
SchI GAGTC 1 cut(s) 346
SetI ASST 4 cut(s) 74, 323, 348, 360
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 1 cut(s) 201
SsiI CCGC 1 cut(s) 41
TaaI ACNGT 2 cut(s) 252, 329
TaiI ACGT 2 cut(s) 74, 323
TasI AATT 1 cut(s) 201
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 2 cut(s) 303, 381
Tru9I TTAA 2 cut(s) 303, 381
TscAI CASTG 2 cut(s) 159, 257
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 2 cut(s) 157, 169
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 4 cut(s) 80, 102, 197, 213
TspRI CASTG 2 cut(s) 159, 257
Vha464I CTTAAG 1 cut(s) 302
XapI RAATTY 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.