Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002220

Physical Location & Seq

Genomic Coordinates Forward (+)

5307869 .. 5310307

Gene Structure 2439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG070400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCTCCATTTTACTATCCTCCATACTTCTTTTGTAAAGCCGTCTCATATTGTTTCAAGAAGATGAAGACGTGTCTTGGAGTTGATGAAGAAATCCATGATATTGAAACCGGTACGCTACCAACAACTCCACCACAAACAGTGCAGCAACAGAAGCAGCAGAAGGCCCAAAGGGTTGAATCTTATGAAATTTTTCATCACCGAAAGGATGTGGAAGCTGTTGGATTTCACAGCGGAGATTGTGTTATTTGTTTGGGAGAGTTTGAGGAAGACGAAGAGTGCGCGATGCTTAAGAAATGTAAGCACACGTACAACCGTGACTGCATTGATAAGCATAAGGTTGGCGTAGGATTTCTTGCTCAGTACATAATCAAACCCTTACTAGGCTTTGTCATTGCACTGGTTTTTGGATGGAAGACTAGATTTTTATCAAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

146

Amino Acids

16.94

Weight (kDa)

8.08

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_11	PF17123	80 - 109	1.1e-06	RING-like zinc finger
zf-RING_2	PF13639	80 - 112	1.6e-06	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51930 AT5G41430 AT5G41440 AT5G41450
fragaria_vesca	FvH4_1g06590 FvH4_1g06600
prunus_persica	Prupe.6G077000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092061 RchiOBHm_Chr2g0092331
rosa_laevigata	RLG00000016274 RLG00000016298 RLG00000016299 RLG00000016300
rosa_multiflora	Rmu_sc0000524.1_g000007 Rmu_sc0003289.1_g000010 Rmu_sc0003289.1_g000011 Rmu_sc0003289.1_g000012
rosa_roxburghii	Rroxscaffold_2G00149220 Rroxscaffold_2G00149230 Rroxscaffold_2G00149240 Rroxscaffold_2G00149480 Rroxscaffold_2G00149500
rosa_rugosa	Rorug02G0022800 Rorug02G0024800 Rorug02G0024800 Rorug02G0024900
rosa_samantha	Rh2AG068400 Rh2AG068500 Rh2AG070800 Rh2AG070900 Rh2BG067700 Rh2BG070300 Rh2BG070400 Rh2BG070500 Rh2CG069000 Rh2CG071500 Rh2CG071800 Rh2CG071900 Rh2DG067300 Rh2DG069300 Rh2DG069400
rosa_wichuraiana	Rw2G006140 Rw2G006150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	284
AciI	CCGC	1 cut(s)	234
AcsI	RAATTY	1 cut(s)	189
AfaI	GTAC	3 cut(s)	115, 311, 365
AfiI	CCNNNNNNNGG	1 cut(s)	383
AflII	CTTAAG	1 cut(s)	290
AflIII	ACRYGT	2 cut(s)	71, 306
AgeI	ACCGGT	1 cut(s)	110
AgsI	TTSAA	3 cut(s)	58, 107, 179
AjiI	CACGTC	1 cut(s)	72
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
Alw26I	GTCTC	1 cut(s)	49
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	2 cut(s)	145, 157
ApoI	RAATTY	1 cut(s)	189
AsiGI	ACCGGT	1 cut(s)	110
Asp700I	GAANNNNTTC	1 cut(s)	192
AspLEI	GCGC	1 cut(s)	284
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	191
BbsI	GAAGAC	3 cut(s)	74, 276, 422
BbvI	GCAGC	2 cut(s)	157, 169
BccI	CCATC	1 cut(s)	405
BceAI	ACGGC	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	2 cut(s)	383, 420
BfrI	CTTAAG	1 cut(s)	290
BisI	GCNGC	2 cut(s)	146, 158
BlsI	GCNGC	2 cut(s)	147, 159
BmgBI	CACGTC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	276
BpiI	GAAGAC	3 cut(s)	74, 276, 422
BsaAI	YACGTR	1 cut(s)	309
BsaBI	GATNNNNATC	1 cut(s)	427
BsaWI	WCCGGW	1 cut(s)	110
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	405
Bse3DI	GCAATG	1 cut(s)	393
Bse8I	GATNNNNATC	1 cut(s)	427
BseGI	GGATG	2 cut(s)	214, 416
BseJI	GATNNNNATC	1 cut(s)	427
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	1 cut(s)	405
BseXI	GCAGC	2 cut(s)	157, 169
BsgI	GTGCAG	1 cut(s)	164
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	1 cut(s)	167
BshTI	ACCGGT	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	49
BsmBI	CGTCTC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	167
BspACI	CCGC	1 cut(s)	234
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	373
BspFNI	CGCG	1 cut(s)	284
BspLI	GGNNCC	1 cut(s)	6
BspTI	CTTAAG	1 cut(s)	290
BsrDI	GCAATG	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	405
BssAI	RCCGGY	1 cut(s)	110
Bst4CI	ACNGT	2 cut(s)	142, 317
Bst6I	CTCTTC	1 cut(s)	270
BstAFI	CTTAAG	1 cut(s)	290
BstBAI	YACGTR	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	360
BstF5I	GGATG	2 cut(s)	214, 416
BstFNI	CGCG	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	284
BstMAI	GTCTC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	2 cut(s)	157, 169
BstV2I	GAAGAC	3 cut(s)	74, 276, 422
BsuRI	GGCC	1 cut(s)	167
BtgZI	GCGATG	1 cut(s)	299
BtrI	CACGTC	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	214, 416
BtsIMutI	CAGTG	2 cut(s)	147, 398
CfoI	GCGC	1 cut(s)	284
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	166
Csp6I	GTAC	3 cut(s)	114, 310, 364
CspAI	ACCGGT	1 cut(s)	110
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	5 cut(s)	5, 41, 167, 218, 387
CviKI_1	RGCY	5 cut(s)	5, 41, 167, 218, 387
CviQI	GTAC	3 cut(s)	114, 310, 364
DdeI	CTNAG	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	1 cut(s)	101
FaiI	YATR	6 cut(s)	25, 49, 99, 186, 336, 368
FatI	CATG	1 cut(s)	97
Fnu4HI	GCNGC	2 cut(s)	146, 158
FokI	GGATG	2 cut(s)	221, 423
Fsp4HI	GCNGC	2 cut(s)	146, 158
FspBI	CTAG	2 cut(s)	383, 420
GlaI	GCGC	1 cut(s)	283
GluI	GCNGC	2 cut(s)	146, 158
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	1 cut(s)	284
Hin1II	CATG	1 cut(s)	101
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	1 cut(s)	191
Hpy188III	TCNNGA	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	2 cut(s)	142, 317
HpyCH4IV	ACGT	2 cut(s)	71, 308
HpyCH4V	TGCA	3 cut(s)	145, 324, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
HpyF3I	CTNAG	1 cut(s)	360
HpySE526I	ACGT	2 cut(s)	71, 308
Hsp92II	CATG	1 cut(s)	101
HspAI	GCGC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	2 cut(s)	124, 386
Lsp1109I	GCAGC	2 cut(s)	157, 169
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	2 cut(s)	383, 420
MaeII	ACGT	2 cut(s)	71, 308
MaeIII	GTNAC	1 cut(s)	317
MboII	GAAGA	6 cut(s)	73, 79, 101, 281, 287, 427
MluCI	AATT	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	2 cut(s)	30, 259
MroXI	GAANNNNTTC	1 cut(s)	192
MseI	TTAA	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	234
MspCI	CTTAAG	1 cut(s)	290
MspI	CCGG	1 cut(s)	111
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	317
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	179
PinAI	ACCGGT	1 cut(s)	110
PkrI	GCNGC	2 cut(s)	147, 159
Ppu21I	YACGTR	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	166
RsaI	GTAC	3 cut(s)	115, 311, 365
RsaNI	GTAC	3 cut(s)	114, 310, 364
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	2 cut(s)	146, 158
Sau96I	GGNCC	1 cut(s)	166
SetI	ASST	4 cut(s)	74, 220, 311, 342
SfaNI	GCATC	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	1 cut(s)	189
SsiI	CCGC	1 cut(s)	234
SspMI	CTAG	2 cut(s)	383, 420
TaaI	ACNGT	2 cut(s)	142, 317
TaiI	ACGT	2 cut(s)	74, 311
TasI	AATT	1 cut(s)	189
TatI	WGTACW	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	2 cut(s)	147, 405
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	2 cut(s)	145, 157
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	4 cut(s)	80, 102, 185, 201
TspRI	CASTG	2 cut(s)	147, 405
Vha464I	CTTAAG	1 cut(s)	290
XapI	RAATTY	1 cut(s)	189
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	2 cut(s)	383, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.