AT5G41440

Contains the following InterPro domains Zinc finger, RING-type (InterPro IPR001841), Zinc finger, C3HC4 RING-type (InterPro IPR018957)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002220
Physical Location & Seq
Reverse (-)
16587235 .. 16587609
375 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41440.1

Sequence Viewer

Length: 375 bp
ATGCTGCCAGTGATAATGATCATAGGGACCGGATATATCGTTTACTACACCATAGTAGGCTTTTGGGTAATCGTATTCATCGTTCTATTGTGCTGCAGAACTCCTCCTCCTCCCCCTCCTCCTCCTCCTCCTCAACAAGACATTGAAACTGGACATATTCCAGCGATCAATAAAACCACGGTCGAGACGATCATAAAGGTTGAAGATGTCGAAGAAGGAGATGAGGGTTGCTGTTCAATTTGTCTAGAAGAGTTCAAGATTGGCCACGAGCTTATGTGCATAAAGAAGTGTAGGCATGTTTTTCATCGCTTTTGTATGCTTTCTTGGATTGATGCGAATCGAAATTGTCCTATTTGTCGTTGTTCTGTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

124

Amino Acids

14.05

Weight (kDa)

5.49

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 77 - 120 1.9e-10 Ring finger domain
zf-C3HC4 PF00097 78 - 119 3.1e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 78 - 119 1.5e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 78 - 105 5.4e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 262
AgsI TTSAA 4 cut(s) 146, 203, 237, 256
AloI GAACNNNNNNTCC 2 cut(s) 91, 123
AluBI AGCT 1 cut(s) 271
AluI AGCT 1 cut(s) 271
Alw26I GTCTC 1 cut(s) 179
AoxI GGCC 1 cut(s) 262
ApeKI GCWGC 2 cut(s) 4, 93
AspS9I GGNCC 1 cut(s) 27
AvaII GGWCC 1 cut(s) 27
BalI TGGCCA 1 cut(s) 264
BauI CACGAG 1 cut(s) 266
BbvI GCAGC 1 cut(s) 80
BclI TGATCA 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 94
BisI GCNGC 2 cut(s) 5, 94
BlsI GCNGC 2 cut(s) 6, 95
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 1 cut(s) 28
BmsI GCATC 1 cut(s) 322
BsaBI GATNNNNATC 2 cut(s) 17, 336
BsaJI CCNNGG 1 cut(s) 177
BsaWI WCCGGW 1 cut(s) 29
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bse1I ACTGG 2 cut(s) 8, 154
Bse8I GATNNNNATC 2 cut(s) 17, 336
BseDI CCNNGG 1 cut(s) 177
BseJI GATNNNNATC 2 cut(s) 17, 336
BseNI ACTGG 2 cut(s) 8, 154
BseRI GAGGAG 8 cut(s) 93, 96, 99, 108, 111, 114, 117, 120
BseXI GCAGC 1 cut(s) 80
Bsh1285I CGRYCG 1 cut(s) 183
BshFI GGCC 1 cut(s) 264
BsiEI CGRYCG 1 cut(s) 183
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 179
BsmBI CGTCTC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 1 cut(s) 264
Bsp143I GATC 3 cut(s) 18, 165, 189
BspANI GGCC 1 cut(s) 264
BspLI GGNNCC 1 cut(s) 28
BspMAI CTGCAG 1 cut(s) 98
BsrI ACTGG 2 cut(s) 8, 154
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 3 cut(s) 18, 165, 189
BssSI CACGAG 1 cut(s) 266
Bst2BI CACGAG 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 243
BstDSI CCRYGG 1 cut(s) 177
BstKTI GATC 3 cut(s) 21, 168, 192
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 3 cut(s) 18, 165, 189
BstMCI CGRYCG 1 cut(s) 183
BstNSI RCATGY 1 cut(s) 299
BstSFI CTRYAG 1 cut(s) 94
BstV1I GCAGC 1 cut(s) 80
BsuRI GGCC 1 cut(s) 264
BtgI CCRYGG 1 cut(s) 177
BtgZI GCGATG 1 cut(s) 290
BtsIMutI CAGTG 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 27
CviAII CATG 1 cut(s) 296
CviJI RGCY 3 cut(s) 60, 264, 271
CviKI_1 RGCY 3 cut(s) 60, 264, 271
DpnI GATC 3 cut(s) 20, 167, 191
DpnII GATC 3 cut(s) 18, 165, 189
EaeI YGGCCR 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco47I GGWCC 1 cut(s) 27
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 1 cut(s) 299
FaiI YATR 9 cut(s) 23, 36, 53, 156, 194, 275, 281, 297, 317
FaqI GGGAC 1 cut(s) 40
FatI CATG 1 cut(s) 295
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 2 cut(s) 5, 94
Fsp4HI GCNGC 2 cut(s) 5, 94
FspBI CTAG 1 cut(s) 245
GluI GCNGC 2 cut(s) 5, 94
HaeIII GGCC 1 cut(s) 264
HapII CCGG 1 cut(s) 30
Hin1II CATG 1 cut(s) 299
HinfI GANTC 1 cut(s) 337
HpaII CCGG 1 cut(s) 30
Hpy166II GTNNAC 1 cut(s) 43
Hpy188III TCNNGA 3 cut(s) 184, 245, 256
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 209
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 2 cut(s) 96, 279
Hsp92II CATG 1 cut(s) 299
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 3 cut(s) 18, 165, 189
LpnPI CCDG 4 cut(s) 21, 43, 135, 174
Lsp1109I GCAGC 1 cut(s) 80
LweI GCATC 1 cut(s) 322
MaeI CTAG 1 cut(s) 245
MalI GATC 3 cut(s) 20, 167, 191
MboI GATC 3 cut(s) 18, 165, 189
MboII GAAGA 3 cut(s) 215, 224, 260
MlsI TGGCCA 1 cut(s) 264
MluCI AATT 2 cut(s) 237, 343
MluNI TGGCCA 1 cut(s) 264
Mox20I TGGCCA 1 cut(s) 264
MscI TGGCCA 1 cut(s) 264
Msp20I TGGCCA 1 cut(s) 264
MspI CCGG 1 cut(s) 30
NdeII GATC 3 cut(s) 18, 165, 189
NlaIII CATG 1 cut(s) 299
NlaIV GGNNCC 1 cut(s) 28
NspI RCATGY 1 cut(s) 299
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 185
PfeI GAWTC 1 cut(s) 337
PkrI GCNGC 2 cut(s) 6, 95
PspN4I GGNNCC 1 cut(s) 28
PspPI GGNCC 1 cut(s) 27
PsrI GAACNNNNNNTAC 2 cut(s) 66, 98
PstI CTGCAG 1 cut(s) 98
SatI GCNGC 2 cut(s) 5, 94
Sau3AI GATC 3 cut(s) 18, 165, 189
Sau96I GGNCC 1 cut(s) 27
SetI ASST 2 cut(s) 201, 273
SfaNI GCATC 1 cut(s) 322
SfcI CTRYAG 1 cut(s) 94
SinI GGWCC 1 cut(s) 27
Sse9I AATT 2 cut(s) 237, 343
SspMI CTAG 1 cut(s) 245
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 3 cut(s) 183, 210, 340
TasI AATT 2 cut(s) 237, 343
TfiI GAWTC 1 cut(s) 337
TscAI CASTG 1 cut(s) 15
TseI GCWGC 2 cut(s) 4, 93
TspDTI ATGAA 2 cut(s) 67, 293
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 27
XbaI TCTAGA 1 cut(s) 244
XceI RCATGY 1 cut(s) 299
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.