Rmu_sc0003289.1_g000011

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003289.1
OG0002220
Physical Location & Seq
Reverse (-)
46425 .. 46757
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003289.1_g000011.1.cds

Sequence Viewer

Length: 333 bp
atgaagacgtgtcttggagttgatgaagaaatccatgatattgaaaccggcacgctaccaacaacaacttcaccacaaccaagaccagcagtgcagcaacagaagcagcagaagcagcagaaggccgaaaggattgaatcttatgaaatttttcatcaccgaaaggatgtggaagcagttggatttcacagcagacagtgtgttatttgtttgggagagtttgaggaagatgacgaatgcgctatgcttaagaaatgtaagcacacgtaccaccgtgactgcattgataaggtgaagactcgtgtccggtttgttgtcatagtatcgatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

110

Amino Acids

12.82

Weight (kDa)

6.58

Isoelectric Point (pI)

56.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 147
AfaI GTAC 1 cut(s) 269
AflII CTTAAG 1 cut(s) 248
AflIII ACRYGT 2 cut(s) 8, 264
AgsI TTSAA 2 cut(s) 44, 137
AjiI CACGTC 1 cut(s) 9
AjuI GAANNNNNNNTTGG 2 cut(s) 52, 84
AoxI GGCC 1 cut(s) 123
ApeKI GCWGC 3 cut(s) 94, 106, 115
ApoI RAATTY 1 cut(s) 147
Asp700I GAANNNNTTC 1 cut(s) 150
AspLEI GCGC 1 cut(s) 242
AsuHPI GGTGA 3 cut(s) 63, 149, 304
BauI CACGAG 1 cut(s) 300
BbsI GAAGAC 2 cut(s) 11, 302
BbvI GCAGC 3 cut(s) 106, 118, 127
BfrI CTTAAG 1 cut(s) 248
BisI GCNGC 3 cut(s) 95, 107, 116
BlsI GCNGC 3 cut(s) 96, 108, 117
BmgBI CACGTC 1 cut(s) 9
BoxI GACNNNNGTC 1 cut(s) 302
BpiI GAAGAC 2 cut(s) 11, 302
Bsa29I ATCGAT 1 cut(s) 326
BsaAI YACGTR 1 cut(s) 267
BsaWI WCCGGW 1 cut(s) 306
Bse118I RCCGGY 1 cut(s) 47
BseCI ATCGAT 1 cut(s) 326
BseGI GGATG 1 cut(s) 172
BseXI GCAGC 3 cut(s) 106, 118, 127
BsgI GTGCAG 1 cut(s) 113
BshFI GGCC 1 cut(s) 125
BshVI ATCGAT 1 cut(s) 326
BsiSI CCGG 2 cut(s) 48, 307
BsmI GAATGC 1 cut(s) 242
BsnI GGCC 1 cut(s) 125
BspANI GGCC 1 cut(s) 125
BspDI ATCGAT 1 cut(s) 326
BspTI CTTAAG 1 cut(s) 248
BsrFI RCCGGY 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 47
BssSI CACGAG 1 cut(s) 300
Bst2BI CACGAG 1 cut(s) 300
Bst4CI ACNGT 2 cut(s) 198, 275
BstAFI CTTAAG 1 cut(s) 248
BstBAI YACGTR 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 53
BstF5I GGATG 1 cut(s) 172
BstHHI GCGC 1 cut(s) 242
BstMWI GCNNNNNNNGC 3 cut(s) 103, 112, 115
BstPAI GACNNNNGTC 1 cut(s) 302
BstV1I GCAGC 3 cut(s) 106, 118, 127
BstV2I GAAGAC 2 cut(s) 11, 302
Bsu15I ATCGAT 1 cut(s) 326
BsuRI GGCC 1 cut(s) 125
BsuTUI ATCGAT 1 cut(s) 326
BtrI CACGTC 1 cut(s) 9
BtsCI GGATG 1 cut(s) 172
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 2 cut(s) 96, 203
Cac8I GCNNGC 1 cut(s) 53
CfoI GCGC 1 cut(s) 242
Cfr10I RCCGGY 1 cut(s) 47
ClaI ATCGAT 1 cut(s) 326
Csp6I GTAC 1 cut(s) 268
CviAII CATG 1 cut(s) 35
CviJI RGCY 1 cut(s) 125
CviKI_1 RGCY 1 cut(s) 125
CviQI GTAC 1 cut(s) 268
FaeI CATG 1 cut(s) 38
FaiI YATR 4 cut(s) 36, 144, 245, 320
FatI CATG 1 cut(s) 34
Fnu4HI GCNGC 3 cut(s) 95, 107, 116
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 3 cut(s) 95, 107, 116
GlaI GCGC 1 cut(s) 241
GluI GCNGC 3 cut(s) 95, 107, 116
HaeIII GGCC 1 cut(s) 125
HapII CCGG 2 cut(s) 48, 307
HhaI GCGC 1 cut(s) 242
Hin1II CATG 1 cut(s) 38
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HinfI GANTC 2 cut(s) 137, 298
HpaII CCGG 2 cut(s) 48, 307
HphI GGTGA 3 cut(s) 63, 149, 304
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 2 cut(s) 198, 275
HpyCH4IV ACGT 2 cut(s) 8, 266
HpyCH4V TGCA 2 cut(s) 94, 282
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 112, 115
HpySE526I ACGT 2 cut(s) 8, 266
Hsp92II CATG 1 cut(s) 38
HspAI GCGC 1 cut(s) 240
LpnPI CCDG 3 cut(s) 61, 99, 320
Lsp1109I GCAGC 3 cut(s) 106, 118, 127
MaeII ACGT 2 cut(s) 8, 266
MaeIII GTNAC 1 cut(s) 275
MboII GAAGA 4 cut(s) 16, 38, 239, 307
MluCI AATT 1 cut(s) 147
MlyI GAGTC 1 cut(s) 292
MmeI TCCRAC 1 cut(s) 160
MnlI CCTC 1 cut(s) 217
MroXI GAANNNNTTC 1 cut(s) 150
MseI TTAA 1 cut(s) 249
MspCI CTTAAG 1 cut(s) 248
MspI CCGG 2 cut(s) 48, 307
Mva1269I GAATGC 1 cut(s) 242
MwoI GCNNNNNNNGC 3 cut(s) 103, 112, 115
NlaIII CATG 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 275
PctI GAATGC 1 cut(s) 242
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 3 cut(s) 96, 108, 117
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
Ppu21I YACGTR 1 cut(s) 267
PshAI GACNNNNGTC 1 cut(s) 302
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 3 cut(s) 95, 107, 116
SchI GAGTC 1 cut(s) 292
SetI ASST 3 cut(s) 11, 269, 294
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 1 cut(s) 147
TaaI ACNGT 2 cut(s) 198, 275
TaiI ACGT 2 cut(s) 11, 269
TaqI TCGA 1 cut(s) 326
TasI AATT 1 cut(s) 147
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 2 cut(s) 96, 203
TseFI GTSAC 1 cut(s) 275
TseI GCWGC 3 cut(s) 94, 106, 115
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 4 cut(s) 17, 39, 143, 159
TspRI CASTG 2 cut(s) 96, 203
Vha464I CTTAAG 1 cut(s) 248
XapI RAATTY 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.