Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002220

Physical Location & Seq

Genomic Coordinates Forward (+)

5299809 .. 5300324

Gene Structure 516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG070300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCATCCGTTTGTCCCCTTGTATATGGTTTTAGCAGCGGTGGTCACGTTGTCACCTGCTTTCATCATTTGCTATCCCGAAGCCTTTATCTGCACCTGTTCCATAATTATGGCTCCATTTTACTATCCCCCATACTTCTTTTGTAAAGCCGTCTCATATTGTTTCAAGAAGATGAAGATGTGTCTTGGAGTTGATGAAGAAATCCATGATATTGAAACCGGCACGCTACCAACAACTCTACCACAACCACCACAAGCAATATTGCAGCAACAGAAGCAGCAGAAGGCCCAAAGGGTTGAATCTTATGAAATTTTTTGTCACCGAAAGGATGTGGATGCTGTTGGATTTCACAGCGGAGAGTGTGTTATTTGTCTGGGAGAGTTTGAAGAAGACGACGAGTGCGCGATGCTTAAGAAATGTAAGCACACGTACCACCGTGACTGCATTGATAAGGTGAAAGAAGATTCGTGTCCACTTTGTCGTCATAGTATCGATCTGAAAATAGAAAAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

171

Amino Acids

19.64

Weight (kDa)

5.78

Isoelectric Point (pI)

71.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	120 - 161	5e-11	Ring finger domain
zf-RING_11	PF17123	120 - 149	1.4e-08	RING-like zinc finger
zf-RING_5	PF14634	120 - 162	3.6e-07	zinc-RING finger domain
zf-C3HC4_2	PF13923	120 - 160	2.9e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51930 AT5G41430 AT5G41440 AT5G41450
fragaria_vesca	FvH4_1g06590 FvH4_1g06600
prunus_persica	Prupe.6G077000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092061 RchiOBHm_Chr2g0092331
rosa_laevigata	RLG00000016274 RLG00000016298 RLG00000016299 RLG00000016300
rosa_multiflora	Rmu_sc0000524.1_g000007 Rmu_sc0003289.1_g000010 Rmu_sc0003289.1_g000011 Rmu_sc0003289.1_g000012
rosa_roxburghii	Rroxscaffold_2G00149220 Rroxscaffold_2G00149230 Rroxscaffold_2G00149240 Rroxscaffold_2G00149480 Rroxscaffold_2G00149500
rosa_rugosa	Rorug02G0022800 Rorug02G0024800 Rorug02G0024800 Rorug02G0024900
rosa_samantha	Rh2AG068400 Rh2AG068500 Rh2AG070800 Rh2AG070900 Rh2BG067700 Rh2BG070300 Rh2BG070400 Rh2BG070500 Rh2CG069000 Rh2CG071500 Rh2CG071800 Rh2CG071900 Rh2DG067300 Rh2DG069300 Rh2DG069400
rosa_wichuraiana	Rw2G006140 Rw2G006150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	64
Acc36I	ACCTGC	1 cut(s)	64
AccII	CGCG	1 cut(s)	404
AciI	CCGC	2 cut(s)	38, 354
AcsI	RAATTY	1 cut(s)	309
AfaI	GTAC	1 cut(s)	431
AflII	CTTAAG	1 cut(s)	410
AflIII	ACRYGT	1 cut(s)	426
AgsI	TTSAA	4 cut(s)	166, 215, 299, 386
Alw26I	GTCTC	1 cut(s)	157
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	3 cut(s)	35, 265, 277
ApoI	RAATTY	1 cut(s)	309
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	1 cut(s)	286
AsuHPI	GGTGA	3 cut(s)	45, 311, 466
BbsI	GAAGAC	1 cut(s)	396
BbvI	GCAGC	3 cut(s)	47, 277, 289
BceAI	ACGGC	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	514
BfrI	CTTAAG	1 cut(s)	410
BfuAI	ACCTGC	1 cut(s)	64
BisI	GCNGC	3 cut(s)	36, 266, 278
BlsI	GCNGC	3 cut(s)	37, 267, 279
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	1 cut(s)	114
BmsI	GCATC	3 cut(s)	13, 325, 396
BpiI	GAAGAC	1 cut(s)	396
Bsa29I	ATCGAT	1 cut(s)	492
BsaAI	YACGTR	1 cut(s)	429
BsaXI	ACNNNNNCTCC	2 cut(s)	348, 378
Bse118I	RCCGGY	1 cut(s)	218
BseCI	ATCGAT	1 cut(s)	492
BseGI	GGATG	3 cut(s)	4, 334, 340
BseXI	GCAGC	3 cut(s)	47, 277, 289
BsgI	GTGCAG	1 cut(s)	76
Bsh1236I	CGCG	1 cut(s)	404
BshFI	GGCC	1 cut(s)	287
BshVI	ATCGAT	1 cut(s)	492
BsiSI	CCGG	1 cut(s)	219
BsmAI	GTCTC	1 cut(s)	157
BsmBI	CGTCTC	1 cut(s)	157
BsnI	GGCC	1 cut(s)	287
Bsp143I	GATC	1 cut(s)	493
BspACI	CCGC	2 cut(s)	38, 354
BspANI	GGCC	1 cut(s)	287
BspDI	ATCGAT	1 cut(s)	492
BspFNI	CGCG	1 cut(s)	404
BspLI	GGNNCC	1 cut(s)	114
BspMI	ACCTGC	1 cut(s)	64
BspTI	CTTAAG	1 cut(s)	410
BsrFI	RCCGGY	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	218
BssMI	GATC	1 cut(s)	493
Bst4CI	ACNGT	1 cut(s)	437
BstAFI	CTTAAG	1 cut(s)	410
BstBAI	YACGTR	1 cut(s)	429
BstC8I	GCNNGC	1 cut(s)	224
BstF5I	GGATG	3 cut(s)	4, 334, 340
BstFNI	CGCG	1 cut(s)	404
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	1 cut(s)	496
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	493
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	3 cut(s)	47, 277, 289
BstV2I	GAAGAC	1 cut(s)	396
BstXI	CCANNNNNNTGG	1 cut(s)	109
Bsu15I	ATCGAT	1 cut(s)	492
BsuRI	GGCC	1 cut(s)	287
BsuTUI	ATCGAT	1 cut(s)	492
BtgZI	GCGATG	1 cut(s)	419
BtsCI	GGATG	3 cut(s)	4, 334, 340
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	224
CfoI	GCGC	1 cut(s)	404
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	286
ClaI	ATCGAT	1 cut(s)	492
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	4 cut(s)	83, 113, 149, 287
CviKI_1	RGCY	4 cut(s)	83, 113, 149, 287
CviQI	GTAC	1 cut(s)	430
DpnI	GATC	1 cut(s)	495
DpnII	GATC	1 cut(s)	493
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	1 cut(s)	209
FaiI	YATR	9 cut(s)	24, 26, 104, 110, 133, 157, 207, 306, 486
FatI	CATG	1 cut(s)	205
Fnu4HI	GCNGC	3 cut(s)	36, 266, 278
FokI	GGATG	2 cut(s)	341, 347
Fsp4HI	GCNGC	3 cut(s)	36, 266, 278
FspBI	CTAG	1 cut(s)	514
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	3 cut(s)	36, 266, 278
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	1 cut(s)	219
HhaI	GCGC	1 cut(s)	404
Hin1II	CATG	1 cut(s)	209
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HinfI	GANTC	2 cut(s)	299, 464
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	3 cut(s)	45, 311, 466
Hpy166II	GTNNAC	1 cut(s)	473
Hpy188I	TCNGA	1 cut(s)	498
Hpy188III	TCNNGA	2 cut(s)	77, 166
Hpy8I	GTNNAC	1 cut(s)	473
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4IV	ACGT	2 cut(s)	47, 428
HpyCH4V	TGCA	4 cut(s)	4, 93, 265, 444
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpySE526I	ACGT	2 cut(s)	47, 428
Hsp92II	CATG	1 cut(s)	209
HspAI	GCGC	1 cut(s)	402
Kzo9I	GATC	1 cut(s)	493
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	4 cut(s)	69, 109, 232, 359
Lsp1109I	GCAGC	3 cut(s)	47, 277, 289
LweI	GCATC	3 cut(s)	13, 325, 396
MaeI	CTAG	1 cut(s)	514
MaeII	ACGT	2 cut(s)	47, 428
MaeIII	GTNAC	4 cut(s)	43, 51, 317, 437
MalI	GATC	1 cut(s)	495
MboI	GATC	1 cut(s)	493
MboII	GAAGA	6 cut(s)	181, 187, 209, 398, 401, 473
MluCI	AATT	2 cut(s)	105, 309
MmeI	TCCRAC	1 cut(s)	322
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	107
MspA1I	CMGCKG	2 cut(s)	38, 354
MspCI	CTTAAG	1 cut(s)	410
MspI	CCGG	1 cut(s)	219
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	1 cut(s)	274
NdeII	GATC	1 cut(s)	493
NlaIII	CATG	1 cut(s)	209
NlaIV	GGNNCC	1 cut(s)	114
NmuCI	GTSAC	4 cut(s)	43, 51, 317, 437
NsiI	ATGCAT	1 cut(s)	6
PaqCI	CACCTGC	1 cut(s)	64
PfeI	GAWTC	2 cut(s)	299, 464
PkrI	GCNGC	3 cut(s)	37, 267, 279
Ppu21I	YACGTR	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	286
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	3 cut(s)	36, 266, 278
Sau3AI	GATC	1 cut(s)	493
Sau96I	GGNCC	1 cut(s)	286
SetI	ASST	5 cut(s)	50, 58, 98, 431, 456
SfaNI	GCATC	3 cut(s)	13, 325, 396
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	2 cut(s)	105, 309
SsiI	CCGC	2 cut(s)	38, 354
SspI	AATATT	1 cut(s)	261
SspMI	CTAG	1 cut(s)	514
TaaI	ACNGT	1 cut(s)	437
TaiI	ACGT	2 cut(s)	50, 431
TaqI	TCGA	1 cut(s)	492
TasI	AATT	2 cut(s)	105, 309
TfiI	GAWTC	2 cut(s)	299, 464
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseFI	GTSAC	4 cut(s)	43, 51, 317, 437
TseI	GCWGC	3 cut(s)	35, 265, 277
Tsp45I	GTSAC	4 cut(s)	43, 51, 317, 437
TspDTI	ATGAA	4 cut(s)	52, 188, 210, 321
Vha464I	CTTAAG	1 cut(s)	410
XapI	RAATTY	1 cut(s)	309
XspI	CTAG	1 cut(s)	514
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.