RLG00000016298

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002220
Physical Location & Seq
Forward (+)
5480947 .. 5481291
345 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016298

Sequence Viewer

Length: 345 bp
ATGAAGATGTGTCTTGGAGTTGAGGAAGAAATCCATGATATTGAAACCGGCACGCTACCAACAACTCTACCACAACCGCCACAAGCAATATTGCAGCAACAGAAGCAGCAGAAGGCCCAAAGGGTTGAATCCTACGAAATTTTTTGTCACCGAAAGGATGTGGCAGCTGTTGGATTTCACAGCGGAGAGTGTGTTATTTGTCTGGGAGAGTTTGAAGAAGACGACGAGTGCGCGATGCTTAAGAAATGTAAGCACACGTACCACCGTGACTGCATTGATAAGGTGAAAGAAGATTCGTGTCCACTTTGTCGTCATAGTATCGATGTGAAAATAGAAAAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

115

Amino Acids

13.06

Weight (kDa)

5.47

Isoelectric Point (pI)

73.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 63 - 104 2.3e-11 Ring finger domain
zf-RING_11 PF17123 63 - 92 6.9e-09 RING-like zinc finger
zf-RING_5 PF14634 63 - 105 1.6e-07 zinc-RING finger domain
zf-C3HC4_2 PF13923 63 - 103 1.3e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 233
AciI CCGC 2 cut(s) 77, 183
AcsI RAATTY 1 cut(s) 138
AfaI GTAC 1 cut(s) 260
AflII CTTAAG 1 cut(s) 239
AflIII ACRYGT 1 cut(s) 255
AgsI TTSAA 3 cut(s) 44, 128, 215
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 3 cut(s) 94, 106, 164
ApoI RAATTY 1 cut(s) 138
AspLEI GCGC 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 115
AsuHPI GGTGA 2 cut(s) 140, 295
BbsI GAAGAC 1 cut(s) 225
BbvI GCAGC 3 cut(s) 106, 118, 176
BfaI CTAG 1 cut(s) 343
BfrI CTTAAG 1 cut(s) 239
BisI GCNGC 3 cut(s) 95, 107, 165
BlsI GCNGC 3 cut(s) 96, 108, 166
BmgT120I GGNCC 1 cut(s) 115
BmsI GCATC 1 cut(s) 225
BpiI GAAGAC 1 cut(s) 225
Bsa29I ATCGAT 1 cut(s) 321
BsaAI YACGTR 1 cut(s) 258
BsaXI ACNNNNNCTCC 2 cut(s) 177, 207
Bse118I RCCGGY 1 cut(s) 47
BseCI ATCGAT 1 cut(s) 321
BseGI GGATG 1 cut(s) 163
BseXI GCAGC 3 cut(s) 106, 118, 176
Bsh1236I CGCG 1 cut(s) 233
BshFI GGCC 1 cut(s) 116
BshVI ATCGAT 1 cut(s) 321
BsiSI CCGG 1 cut(s) 48
BsnI GGCC 1 cut(s) 116
BspACI CCGC 2 cut(s) 77, 183
BspANI GGCC 1 cut(s) 116
BspDI ATCGAT 1 cut(s) 321
BspFNI CGCG 1 cut(s) 233
BspTI CTTAAG 1 cut(s) 239
BsrFI RCCGGY 1 cut(s) 47
BssAI RCCGGY 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 266
BstAFI CTTAAG 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 53
BstF5I GGATG 1 cut(s) 163
BstFNI CGCG 1 cut(s) 233
BstHHI GCGC 1 cut(s) 233
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstUI CGCG 1 cut(s) 233
BstV1I GCAGC 3 cut(s) 106, 118, 176
BstV2I GAAGAC 1 cut(s) 225
Bsu15I ATCGAT 1 cut(s) 321
BsuRI GGCC 1 cut(s) 116
BsuTUI ATCGAT 1 cut(s) 321
BtgZI GCGATG 1 cut(s) 248
BtsCI GGATG 1 cut(s) 163
Cac8I GCNNGC 1 cut(s) 53
CfoI GCGC 1 cut(s) 233
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 115
ClaI ATCGAT 1 cut(s) 321
Csp6I GTAC 1 cut(s) 259
CviAII CATG 1 cut(s) 35
CviJI RGCY 2 cut(s) 116, 167
CviKI_1 RGCY 2 cut(s) 116, 167
CviQI GTAC 1 cut(s) 259
FaeI CATG 1 cut(s) 38
FaiI YATR 2 cut(s) 36, 315
FatI CATG 1 cut(s) 34
Fnu4HI GCNGC 3 cut(s) 95, 107, 165
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 3 cut(s) 95, 107, 165
FspBI CTAG 1 cut(s) 343
GlaI GCGC 1 cut(s) 232
GluI GCNGC 3 cut(s) 95, 107, 165
HaeIII GGCC 1 cut(s) 116
HapII CCGG 1 cut(s) 48
HhaI GCGC 1 cut(s) 233
Hin1II CATG 1 cut(s) 38
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HinfI GANTC 2 cut(s) 128, 293
HpaII CCGG 1 cut(s) 48
HphI GGTGA 2 cut(s) 140, 295
Hpy166II GTNNAC 1 cut(s) 302
Hpy8I GTNNAC 1 cut(s) 302
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4IV ACGT 1 cut(s) 257
HpyCH4V TGCA 2 cut(s) 94, 273
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpySE526I ACGT 1 cut(s) 257
Hsp92II CATG 1 cut(s) 38
HspAI GCGC 1 cut(s) 231
LpnPI CCDG 2 cut(s) 61, 188
Lsp1109I GCAGC 3 cut(s) 106, 118, 176
LweI GCATC 1 cut(s) 225
MaeI CTAG 1 cut(s) 343
MaeII ACGT 1 cut(s) 257
MaeIII GTNAC 2 cut(s) 146, 266
MboII GAAGA 5 cut(s) 16, 38, 227, 230, 302
MluCI AATT 1 cut(s) 138
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 1 cut(s) 16
MseI TTAA 1 cut(s) 240
MspA1I CMGCKG 2 cut(s) 167, 183
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 1 cut(s) 48
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 103
NlaIII CATG 1 cut(s) 38
NmuCI GTSAC 2 cut(s) 146, 266
PfeI GAWTC 2 cut(s) 128, 293
PkrI GCNGC 3 cut(s) 96, 108, 166
Ppu21I YACGTR 1 cut(s) 258
PspPI GGNCC 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 167
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 3 cut(s) 95, 107, 165
Sau96I GGNCC 1 cut(s) 115
SetI ASST 3 cut(s) 169, 260, 285
SfaNI GCATC 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 1 cut(s) 138
SsiI CCGC 2 cut(s) 77, 183
SspI AATATT 1 cut(s) 90
SspMI CTAG 1 cut(s) 343
TaaI ACNGT 1 cut(s) 266
TaiI ACGT 1 cut(s) 260
TaqI TCGA 1 cut(s) 321
TasI AATT 1 cut(s) 138
TfiI GAWTC 2 cut(s) 128, 293
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TseFI GTSAC 2 cut(s) 146, 266
TseI GCWGC 3 cut(s) 94, 106, 164
Tsp45I GTSAC 2 cut(s) 146, 266
TspDTI ATGAA 1 cut(s) 17
Vha464I CTTAAG 1 cut(s) 239
XapI RAATTY 1 cut(s) 138
XspI CTAG 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.