Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002220

Physical Location & Seq

Genomic Coordinates Reverse (-)

1819156 .. 1819686

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0022800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAGGGATGAACCCTTACATTCCCCAAGGGATTATTATATTGGGGACGTCTTCTTGGGAGTCAATGATGCCAATGTCATGCTTTCTTTTGATTTGGAGTCAGCCAATAAGTGGGACGAGTATGATATGCTTGACAACAACTTCTGGGGTGATTGGTCACCCGGCGTGGTGCTTTACGACGACCGCTACTTGTTTTCTTTTGGCACTAGGAGTCCCAAACTCAAACCTAAACCCAAAGAAGCCAAGAGCATGACGAGGAGGGTTCGAGAGGAGGAGGTTTCTGGAATTTATGTTTTTGATCTCGAACAGCGTCAATGGCTACCGGAGCCAGTTCAGGGTCTCCCGAGTGATGGAACCGTGATTCCTGAAGCTTACCAGCCATTACCAAAAGCATTTCCGTTCCAAAGATTCTCTCCACAGTTGTTCCAGATCGATCAGAAAGGACGGCGACCGCCACCACTTGGCGTTATTGTGGGATTCTGTTGGGGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

164

Amino Acids

19.02

Weight (kDa)

4.94

Isoelectric Point (pI)

55.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51930 AT5G41430 AT5G41440 AT5G41450
fragaria_vesca	FvH4_1g06590 FvH4_1g06600
prunus_persica	Prupe.6G077000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092061 RchiOBHm_Chr2g0092331
rosa_laevigata	RLG00000016274 RLG00000016298 RLG00000016299 RLG00000016300
rosa_multiflora	Rmu_sc0000524.1_g000007 Rmu_sc0003289.1_g000010 Rmu_sc0003289.1_g000011 Rmu_sc0003289.1_g000012
rosa_roxburghii	Rroxscaffold_2G00149220 Rroxscaffold_2G00149230 Rroxscaffold_2G00149240 Rroxscaffold_2G00149480 Rroxscaffold_2G00149500
rosa_rugosa	Rorug02G0022800 Rorug02G0024800 Rorug02G0024800 Rorug02G0024900
rosa_samantha	Rh2AG068400 Rh2AG068500 Rh2AG070800 Rh2AG070900 Rh2BG067700 Rh2BG070300 Rh2BG070400 Rh2BG070500 Rh2CG069000 Rh2CG071500 Rh2CG071800 Rh2CG071900 Rh2DG067300 Rh2DG069300 Rh2DG069400
rosa_wichuraiana	Rw2G006140 Rw2G006150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	51
AccB7I	CCANNNNNTGG	2 cut(s)	111, 461
AciI	CCGC	2 cut(s)	184, 452
AcsI	RAATTY	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	387
AcyI	GRCGYC	1 cut(s)	48
AfiI	CCNNNNNNNGG	4 cut(s)	111, 335, 350, 461
AloI	GAACNNNNNNTCC	2 cut(s)	346, 378
AluBI	AGCT	1 cut(s)	371
AluI	AGCT	1 cut(s)	371
Alw26I	GTCTC	1 cut(s)	344
Ama87I	CYCGRG	1 cut(s)	343
ApoI	RAATTY	1 cut(s)	285
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	2 cut(s)	150, 161
AvaI	CYCGRG	1 cut(s)	343
BbsI	GAAGAC	1 cut(s)	43
BccI	CCATC	1 cut(s)	344
BceAI	ACGGC	1 cut(s)	461
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	1 cut(s)	207
Bme1390I	CCNGG	1 cut(s)	162
BmeT110I	CYCGRG	1 cut(s)	343
BmiI	GGNNCC	2 cut(s)	327, 355
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	43
BpuMI	CCSGG	1 cut(s)	162
Bsa29I	ATCGAT	1 cut(s)	432
BsaHI	GRCGYC	1 cut(s)	48
BsaI	GGTCTC	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	26
BsaWI	WCCGGW	1 cut(s)	322
Bsc4I	CCNNNNNNNGG	4 cut(s)	111, 335, 350, 461
Bse1I	ACTGG	1 cut(s)	329
BseCI	ATCGAT	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	4 cut(s)	111, 335, 350, 461
BseNI	ACTGG	1 cut(s)	329
BseRI	GAGGAG	3 cut(s)	271, 284, 287
Bsh1285I	CGRYCG	2 cut(s)	184, 452
BshVI	ATCGAT	1 cut(s)	432
BsiEI	CGRYCG	2 cut(s)	184, 452
BsiHKCI	CYCGRG	1 cut(s)	343
BsiSI	CCGG	2 cut(s)	162, 323
BslFI	GGGAC	3 cut(s)	59, 128, 198
BslI	CCNNNNNNNGG	4 cut(s)	111, 335, 350, 461
BsmAI	GTCTC	1 cut(s)	344
BsmFI	GGGAC	3 cut(s)	59, 128, 198
Bso31I	GGTCTC	1 cut(s)	344
BsoBI	CYCGRG	1 cut(s)	343
Bsp143I	GATC	3 cut(s)	298, 429, 433
BspACI	CCGC	2 cut(s)	184, 452
BspDI	ATCGAT	1 cut(s)	432
BspLI	GGNNCC	2 cut(s)	327, 355
BspTNI	GGTCTC	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	3 cut(s)	298, 429, 433
BssNI	GRCGYC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	26
Bst4CI	ACNGT	2 cut(s)	358, 420
BstACI	GRCGYC	1 cut(s)	48
BstEII	GGTNACC	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	3 cut(s)	301, 432, 436
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	3 cut(s)	298, 429, 433
BstMCI	CGRYCG	2 cut(s)	184, 452
BstMWI	GCNNNNNNNGC	2 cut(s)	316, 325
BstPI	GGTNACC	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	43
Bsu15I	ATCGAT	1 cut(s)	432
BsuTUI	ATCGAT	1 cut(s)	432
BtsCI	GGATG	1 cut(s)	13
ClaI	ATCGAT	1 cut(s)	432
CseI	GACGC	1 cut(s)	299
CviAII	CATG	2 cut(s)	79, 250
CviJI	RGCY	6 cut(s)	104, 242, 319, 328, 371, 379
CviKI_1	RGCY	6 cut(s)	104, 242, 319, 328, 371, 379
DpnI	GATC	3 cut(s)	300, 431, 435
DpnII	GATC	3 cut(s)	298, 429, 433
Eco130I	CCWWGG	1 cut(s)	26
Eco31I	GGTCTC	1 cut(s)	344
Eco57I	CTGAAG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	343
Eco91I	GGTNACC	1 cut(s)	156
EcoO65I	GGTNACC	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	26
FaeI	CATG	2 cut(s)	82, 253
FaiI	YATR	6 cut(s)	39, 80, 123, 128, 251, 291
FaqI	GGGAC	3 cut(s)	59, 128, 198
FatI	CATG	2 cut(s)	78, 249
FokI	GGATG	1 cut(s)	20
FspBI	CTAG	1 cut(s)	207
HapII	CCGG	2 cut(s)	162, 323
HgaI	GACGC	1 cut(s)	299
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	2 cut(s)	82, 253
HindIII	AAGCTT	1 cut(s)	369
HinfI	GANTC	6 cut(s)	60, 98, 211, 361, 408, 477
HpaII	CCGG	2 cut(s)	162, 323
HphI	GGTGA	2 cut(s)	150, 161
Hpy188I	TCNGA	1 cut(s)	438
Hpy188III	TCNNGA	6 cut(s)	266, 282, 302, 343, 365, 427
Hpy99I	CGWCG	1 cut(s)	182
HpyCH4III	ACNGT	2 cut(s)	358, 420
HpyCH4IV	ACGT	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	2 cut(s)	316, 325
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	82, 253
Kzo9I	GATC	3 cut(s)	298, 429, 433
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	9 cut(s)	130, 175, 267, 320, 336, 342, 378, 389, 440
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	207
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	156
MalI	GATC	3 cut(s)	300, 431, 435
MboI	GATC	3 cut(s)	298, 429, 433
MboII	GAAGA	1 cut(s)	43
MluCI	AATT	1 cut(s)	285
MlyI	GAGTC	3 cut(s)	69, 107, 220
MnlI	CCTC	5 cut(s)	249, 252, 262, 265, 268
MspI	CCGG	2 cut(s)	162, 323
MspR9I	CCNGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	316, 325
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	3 cut(s)	298, 429, 433
NlaIII	CATG	2 cut(s)	82, 253
NlaIV	GGNNCC	2 cut(s)	327, 355
NmuCI	GTSAC	1 cut(s)	156
PfeI	GAWTC	3 cut(s)	361, 408, 477
PflMI	CCANNNNNTGG	2 cut(s)	111, 461
PleI	GAGTC	3 cut(s)	68, 106, 219
PpsI	GAGTC	3 cut(s)	68, 106, 219
PspEI	GGTNACC	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	327, 355
Sau3AI	GATC	3 cut(s)	298, 429, 433
SchI	GAGTC	3 cut(s)	69, 107, 220
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	4 cut(s)	51, 229, 279, 373
SfaNI	GCATC	1 cut(s)	58
Sse9I	AATT	1 cut(s)	285
SsiI	CCGC	2 cut(s)	184, 452
SspMI	CTAG	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	358, 420
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	3 cut(s)	265, 303, 432
TasI	AATT	1 cut(s)	285
TfiI	GAWTC	3 cut(s)	361, 408, 477
TseFI	GTSAC	1 cut(s)	156
Tsp45I	GTSAC	1 cut(s)	156
TspDTI	ATGAA	1 cut(s)	24
TspGWI	ACGGA	1 cut(s)	387
Van91I	CCANNNNNTGG	2 cut(s)	111, 461
XapI	RAATTY	1 cut(s)	285
XspI	CTAG	1 cut(s)	207
ZraI	GACGTC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.