FvH4_1g06600

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002220
Physical Location & Seq
Forward (+)
3474502 .. 3474849
348 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06600.t1

Sequence Viewer

Length: 348 bp
ATGAAGAAGTGTCTTGGAGTTGATGGAGAAGAAATCATCCACGACATTGAAACCGGCACGCTACCAACAACTCCACCGCAACCGGCGCGTCAACAGAAGCAGCAGAAGAAGCTTGAAAGGGCTGAAGCTTATGAAGTTTTTCGTTACCGAAAGGATGTTGAAGCAGGTGGATTTCACAGCGGAGAGTGTGTTATTTGTTTGGGAGAGTATGAGGAAGACGATGAGTGTGCGAGGCTTAAGAAATGTAAGCACACGTACCACCGTGCATGTATTGACAAGGTGAAACAAGACTCATGTCCGGTGTGTCGTCATAGTATCGATATCAAAATAGAAAAACCCTGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

116

Amino Acids

13.19

Weight (kDa)

6.51

Isoelectric Point (pI)

57.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 62 - 103 4.9e-11 Ring finger domain
zf-RING_11 PF17123 62 - 91 2.8e-08 RING-like zinc finger
zf-RING_5 PF14634 62 - 104 5.5e-07 zinc-RING finger domain
zf-C3HC4_2 PF13923 62 - 102 6.2e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 63 - 102 3.4e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 155
Acc36I ACCTGC 1 cut(s) 155
AccII CGCG 1 cut(s) 88
AciI CCGC 2 cut(s) 77, 180
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 1 cut(s) 257
AflII CTTAAG 1 cut(s) 236
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 3 cut(s) 50, 116, 161
AluBI AGCT 2 cut(s) 112, 128
AluI AGCT 2 cut(s) 112, 128
ApeKI GCWGC 1 cut(s) 100
Asp700I GAANNNNTTC 1 cut(s) 138
AspLEI GCGC 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 292
BbsI GAAGAC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 112
BccI CCATC 1 cut(s) 17
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BfrI CTTAAG 1 cut(s) 236
BfuAI ACCTGC 1 cut(s) 155
BisI GCNGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 102
BoxI GACNNNNGTC 1 cut(s) 294
BpiI GAAGAC 1 cut(s) 222
Bsa29I ATCGAT 1 cut(s) 318
BsaAI YACGTR 1 cut(s) 255
BsaWI WCCGGW 1 cut(s) 298
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bse118I RCCGGY 2 cut(s) 53, 82
BseCI ATCGAT 1 cut(s) 318
BseGI GGATG 2 cut(s) 36, 160
BseXI GCAGC 1 cut(s) 112
Bsh1236I CGCG 1 cut(s) 88
BshVI ATCGAT 1 cut(s) 318
BsiSI CCGG 3 cut(s) 54, 83, 299
BspACI CCGC 2 cut(s) 77, 180
BspDI ATCGAT 1 cut(s) 318
BspFNI CGCG 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 155
BspTI CTTAAG 1 cut(s) 236
BsrFI RCCGGY 2 cut(s) 53, 82
BssAI RCCGGY 2 cut(s) 53, 82
Bst4CI ACNGT 1 cut(s) 263
BstAFI CTTAAG 1 cut(s) 236
BstBAI YACGTR 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 59
BstF5I GGATG 2 cut(s) 36, 160
BstFNI CGCG 1 cut(s) 88
BstHHI GCGC 1 cut(s) 88
BstMWI GCNNNNNNNGC 2 cut(s) 85, 109
BstNSI RCATGY 1 cut(s) 270
BstPAI GACNNNNGTC 1 cut(s) 294
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 222
Bsu15I ATCGAT 1 cut(s) 318
BsuTUI ATCGAT 1 cut(s) 318
BtsCI GGATG 2 cut(s) 36, 160
BveI ACCTGC 1 cut(s) 155
Cac8I GCNNGC 1 cut(s) 59
CfoI GCGC 1 cut(s) 88
Cfr10I RCCGGY 2 cut(s) 53, 82
ClaI ATCGAT 1 cut(s) 318
CseI GACGC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 256
CviAII CATG 2 cut(s) 267, 294
CviJI RGCY 4 cut(s) 112, 122, 128, 235
CviKI_1 RGCY 4 cut(s) 112, 122, 128, 235
CviQI GTAC 1 cut(s) 256
Eco32I GATATC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 144
EcoRV GATATC 1 cut(s) 322
FaeI CATG 2 cut(s) 270, 297
FaiI YATR 5 cut(s) 132, 210, 268, 295, 312
FatI CATG 2 cut(s) 266, 293
Fnu4HI GCNGC 1 cut(s) 101
FokI GGATG 2 cut(s) 23, 167
Fsp4HI GCNGC 1 cut(s) 101
GlaI GCGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 101
HapII CCGG 3 cut(s) 54, 83, 299
HgaI GACGC 1 cut(s) 77
HhaI GCGC 1 cut(s) 88
Hin1II CATG 2 cut(s) 270, 297
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HincII GTYRAC 1 cut(s) 92
HindII GTYRAC 1 cut(s) 92
HindIII AAGCTT 2 cut(s) 110, 126
HinfI GANTC 1 cut(s) 290
HpaII CCGG 3 cut(s) 54, 83, 299
HphI GGTGA 1 cut(s) 292
Hpy166II GTNNAC 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 1 cut(s) 266
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 109
HpySE526I ACGT 1 cut(s) 254
Hsp92II CATG 2 cut(s) 270, 297
HspAI GCGC 1 cut(s) 86
LpnPI CCDG 4 cut(s) 67, 96, 150, 312
Lsp1109I GCAGC 1 cut(s) 112
MaeII ACGT 1 cut(s) 254
MaeIII GTNAC 1 cut(s) 143
MboII GAAGA 4 cut(s) 16, 41, 118, 227
MluCI AATT 1 cut(s) 343
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 2 cut(s) 205, 225
MroXI GAANNNNTTC 1 cut(s) 138
MseI TTAA 2 cut(s) 237, 346
MspA1I CMGCKG 1 cut(s) 180
MspCI CTTAAG 1 cut(s) 236
MspI CCGG 3 cut(s) 54, 83, 299
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 2 cut(s) 85, 109
NlaIII CATG 2 cut(s) 270, 297
NspI RCATGY 1 cut(s) 270
PaqCI CACCTGC 1 cut(s) 155
PdmI GAANNNNTTC 1 cut(s) 138
PkrI GCNGC 1 cut(s) 102
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
Ppu21I YACGTR 1 cut(s) 255
PshAI GACNNNNGTC 1 cut(s) 294
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 2 cut(s) 237, 346
SatI GCNGC 1 cut(s) 101
SchI GAGTC 1 cut(s) 284
SetI ASST 5 cut(s) 114, 130, 169, 257, 282
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 1 cut(s) 343
SsiI CCGC 2 cut(s) 77, 180
TaaI ACNGT 1 cut(s) 263
TaiI ACGT 1 cut(s) 257
TaqI TCGA 1 cut(s) 318
TasI AATT 1 cut(s) 343
Tru1I TTAA 2 cut(s) 237, 346
Tru9I TTAA 2 cut(s) 237, 346
TseI GCWGC 1 cut(s) 100
TspDTI ATGAA 2 cut(s) 17, 147
Vha464I CTTAAG 1 cut(s) 236
XceI RCATGY 1 cut(s) 270
XmnI GAANNNNTTC 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.