Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002220

Physical Location & Seq

Genomic Coordinates Forward (+)

5864552 .. 5865043

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG071500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGTTTTAGCAGCGGTGGTCACGTTGTCACCTGCTTTCATCATTTGCTATCCCGAAGCCTTTATCTGCACCTGTTCCATAATTATGGCTCCATTTTACTATCCCCCATACTTCTTTTGTAAAGCCGTCTCATATTGTTTCAAGAAGATGAAGATGTGTCTTGGAGTTGATGAAGAAATCCATGATATTGAAACCGGCACGCTACCAACAACTCTACCACAACCACCACAAGCAATATTGCAGCAACAGAAGCAGCAGAAGGCCCAAAGGGTTGAATCTTATGAAATTTTTTGTCACCGAAAGGATGTGGATGCTGTTGGATTTCACAGCGGAGAGTGTGTTATTTGTCTGGGAGAGTTTGAAGAAGACGACGAGTGCGCGATGCTTAAGAAATGTAAGCACACGTACCACCGTGACTGCATTGATAAGGTGAAAGAAGATTCGTGTCCACTTTGTCGTCATAGTATCGATCTGAAAATAGAAAAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

163

Amino Acids

18.66

Weight (kDa)

5.66

Isoelectric Point (pI)

66.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	112 - 153	4.6e-11	Ring finger domain
zf-RING_11	PF17123	112 - 141	1.3e-08	RING-like zinc finger
zf-RING_5	PF14634	112 - 154	3.3e-07	zinc-RING finger domain
zf-C3HC4_2	PF13923	112 - 152	2.7e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51930 AT5G41430 AT5G41440 AT5G41450
fragaria_vesca	FvH4_1g06590 FvH4_1g06600
prunus_persica	Prupe.6G077000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092061 RchiOBHm_Chr2g0092331
rosa_laevigata	RLG00000016274 RLG00000016298 RLG00000016299 RLG00000016300
rosa_multiflora	Rmu_sc0000524.1_g000007 Rmu_sc0003289.1_g000010 Rmu_sc0003289.1_g000011 Rmu_sc0003289.1_g000012
rosa_roxburghii	Rroxscaffold_2G00149220 Rroxscaffold_2G00149230 Rroxscaffold_2G00149240 Rroxscaffold_2G00149480 Rroxscaffold_2G00149500
rosa_rugosa	Rorug02G0022800 Rorug02G0024800 Rorug02G0024800 Rorug02G0024900
rosa_samantha	Rh2AG068400 Rh2AG068500 Rh2AG070800 Rh2AG070900 Rh2BG067700 Rh2BG070300 Rh2BG070400 Rh2BG070500 Rh2CG069000 Rh2CG071500 Rh2CG071800 Rh2CG071900 Rh2DG067300 Rh2DG069300 Rh2DG069400
rosa_wichuraiana	Rw2G006140 Rw2G006150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	40
Acc36I	ACCTGC	1 cut(s)	40
AccII	CGCG	1 cut(s)	380
AciI	CCGC	2 cut(s)	14, 330
AcsI	RAATTY	1 cut(s)	285
AfaI	GTAC	1 cut(s)	407
AflII	CTTAAG	1 cut(s)	386
AflIII	ACRYGT	1 cut(s)	402
AgsI	TTSAA	4 cut(s)	142, 191, 275, 362
Alw26I	GTCTC	1 cut(s)	133
AoxI	GGCC	1 cut(s)	261
ApeKI	GCWGC	3 cut(s)	11, 241, 253
ApoI	RAATTY	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	380
AspS9I	GGNCC	1 cut(s)	262
AsuHPI	GGTGA	3 cut(s)	21, 287, 442
BbsI	GAAGAC	1 cut(s)	372
BbvI	GCAGC	3 cut(s)	23, 253, 265
BceAI	ACGGC	1 cut(s)	110
BcoDI	GTCTC	1 cut(s)	133
BfaI	CTAG	1 cut(s)	490
BfrI	CTTAAG	1 cut(s)	386
BfuAI	ACCTGC	1 cut(s)	40
BisI	GCNGC	3 cut(s)	12, 242, 254
BlsI	GCNGC	3 cut(s)	13, 243, 255
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	90
BmsI	GCATC	2 cut(s)	301, 372
BpiI	GAAGAC	1 cut(s)	372
Bsa29I	ATCGAT	1 cut(s)	468
BsaAI	YACGTR	1 cut(s)	405
BsaXI	ACNNNNNCTCC	2 cut(s)	324, 354
Bse118I	RCCGGY	1 cut(s)	194
BseCI	ATCGAT	1 cut(s)	468
BseGI	GGATG	2 cut(s)	310, 316
BseXI	GCAGC	3 cut(s)	23, 253, 265
BsgI	GTGCAG	1 cut(s)	52
Bsh1236I	CGCG	1 cut(s)	380
BshFI	GGCC	1 cut(s)	263
BshVI	ATCGAT	1 cut(s)	468
BsiSI	CCGG	1 cut(s)	195
BsmAI	GTCTC	1 cut(s)	133
BsmBI	CGTCTC	1 cut(s)	133
BsnI	GGCC	1 cut(s)	263
Bsp143I	GATC	1 cut(s)	469
BspACI	CCGC	2 cut(s)	14, 330
BspANI	GGCC	1 cut(s)	263
BspDI	ATCGAT	1 cut(s)	468
BspFNI	CGCG	1 cut(s)	380
BspLI	GGNNCC	1 cut(s)	90
BspMI	ACCTGC	1 cut(s)	40
BspTI	CTTAAG	1 cut(s)	386
BsrFI	RCCGGY	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	194
BssMI	GATC	1 cut(s)	469
Bst4CI	ACNGT	1 cut(s)	413
BstAFI	CTTAAG	1 cut(s)	386
BstBAI	YACGTR	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	200
BstF5I	GGATG	2 cut(s)	310, 316
BstFNI	CGCG	1 cut(s)	380
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	1 cut(s)	472
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	469
BstMWI	GCNNNNNNNGC	1 cut(s)	250
BstUI	CGCG	1 cut(s)	380
BstV1I	GCAGC	3 cut(s)	23, 253, 265
BstV2I	GAAGAC	1 cut(s)	372
BstXI	CCANNNNNNTGG	1 cut(s)	85
Bsu15I	ATCGAT	1 cut(s)	468
BsuRI	GGCC	1 cut(s)	263
BsuTUI	ATCGAT	1 cut(s)	468
BtgZI	GCGATG	1 cut(s)	395
BtsCI	GGATG	2 cut(s)	310, 316
BveI	ACCTGC	1 cut(s)	40
Cac8I	GCNNGC	1 cut(s)	200
CfoI	GCGC	1 cut(s)	380
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	1 cut(s)	262
ClaI	ATCGAT	1 cut(s)	468
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	1 cut(s)	182
CviJI	RGCY	4 cut(s)	59, 89, 125, 263
CviKI_1	RGCY	4 cut(s)	59, 89, 125, 263
CviQI	GTAC	1 cut(s)	406
DpnI	GATC	1 cut(s)	471
DpnII	GATC	1 cut(s)	469
Esp3I	CGTCTC	1 cut(s)	133
FaeI	CATG	1 cut(s)	185
FaiI	YATR	7 cut(s)	80, 86, 109, 133, 183, 282, 462
FatI	CATG	1 cut(s)	181
Fnu4HI	GCNGC	3 cut(s)	12, 242, 254
FokI	GGATG	2 cut(s)	317, 323
Fsp4HI	GCNGC	3 cut(s)	12, 242, 254
FspBI	CTAG	1 cut(s)	490
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	3 cut(s)	12, 242, 254
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	1 cut(s)	195
HhaI	GCGC	1 cut(s)	380
Hin1II	CATG	1 cut(s)	185
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HinfI	GANTC	2 cut(s)	275, 440
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	3 cut(s)	21, 287, 442
Hpy166II	GTNNAC	1 cut(s)	449
Hpy188I	TCNGA	1 cut(s)	474
Hpy188III	TCNNGA	2 cut(s)	53, 142
Hpy8I	GTNNAC	1 cut(s)	449
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	1 cut(s)	413
HpyCH4IV	ACGT	2 cut(s)	23, 404
HpyCH4V	TGCA	3 cut(s)	69, 241, 420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	250
HpySE526I	ACGT	2 cut(s)	23, 404
Hsp92II	CATG	1 cut(s)	185
HspAI	GCGC	1 cut(s)	378
Kzo9I	GATC	1 cut(s)	469
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	4 cut(s)	45, 85, 208, 335
Lsp1109I	GCAGC	3 cut(s)	23, 253, 265
LweI	GCATC	2 cut(s)	301, 372
MaeI	CTAG	1 cut(s)	490
MaeII	ACGT	2 cut(s)	23, 404
MaeIII	GTNAC	4 cut(s)	19, 27, 293, 413
MalI	GATC	1 cut(s)	471
MboI	GATC	1 cut(s)	469
MboII	GAAGA	6 cut(s)	157, 163, 185, 374, 377, 449
MluCI	AATT	2 cut(s)	81, 285
MmeI	TCCRAC	1 cut(s)	298
MseI	TTAA	1 cut(s)	387
MslI	CAYNNNNRTG	1 cut(s)	83
MspA1I	CMGCKG	2 cut(s)	14, 330
MspCI	CTTAAG	1 cut(s)	386
MspI	CCGG	1 cut(s)	195
MvnI	CGCG	1 cut(s)	380
MwoI	GCNNNNNNNGC	1 cut(s)	250
NdeII	GATC	1 cut(s)	469
NlaIII	CATG	1 cut(s)	185
NlaIV	GGNNCC	1 cut(s)	90
NmuCI	GTSAC	4 cut(s)	19, 27, 293, 413
PaqCI	CACCTGC	1 cut(s)	40
PfeI	GAWTC	2 cut(s)	275, 440
PkrI	GCNGC	3 cut(s)	13, 243, 255
Ppu21I	YACGTR	1 cut(s)	405
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	262
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
RseI	CAYNNNNRTG	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	387
SatI	GCNGC	3 cut(s)	12, 242, 254
Sau3AI	GATC	1 cut(s)	469
Sau96I	GGNCC	1 cut(s)	262
SetI	ASST	5 cut(s)	26, 34, 74, 407, 432
SfaNI	GCATC	2 cut(s)	301, 372
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	2 cut(s)	81, 285
SsiI	CCGC	2 cut(s)	14, 330
SspI	AATATT	1 cut(s)	237
SspMI	CTAG	1 cut(s)	490
TaaI	ACNGT	1 cut(s)	413
TaiI	ACGT	2 cut(s)	26, 407
TaqI	TCGA	1 cut(s)	468
TasI	AATT	2 cut(s)	81, 285
TfiI	GAWTC	2 cut(s)	275, 440
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TseFI	GTSAC	4 cut(s)	19, 27, 293, 413
TseI	GCWGC	3 cut(s)	11, 241, 253
Tsp45I	GTSAC	4 cut(s)	19, 27, 293, 413
TspDTI	ATGAA	4 cut(s)	28, 164, 186, 297
Vha464I	CTTAAG	1 cut(s)	386
XapI	RAATTY	1 cut(s)	285
XspI	CTAG	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.