Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000524.1

Orthogroup ID

OG0002220

Physical Location & Seq

Genomic Coordinates Forward (+)

58135 .. 60324

Gene Structure 2190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000524.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgaaacagaggaagatattggatccggccagctatgatcagaaagttcagaagctccaccatcacaggagccgagtaacaatgtcaatgttgatgcacaaacagcatagcaggattggaaccaatgctatgaagctttcgaatatcgaatggaagttgttaatggaactggcagctgtattggtgatcagtgtagtatttgccaggagaagtttgaggaagacgaagaagatgaatacgagacaccaaacaggtcaagctcaccttgatatcgaatctggaggccaccagttaccagccgctccaccgcagcaacctgctggtaacaatgctggacagccacgacggcccaaggattggagtggatactatgaaatttttagtcatctgaaagttggtgagtgtagtatttgcctgggagagtttgaggaaccagatgtgtgcgcgagacttcgtaagtgtaagcatacgtatcaccgggaatgcattgatctgtggctacctaaatcgtgtccgatttgtcgtcaaaacggagtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

179

Amino Acids

20.57

Weight (kDa)

9.76

Isoelectric Point (pI)

67.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51930 AT5G41430 AT5G41440 AT5G41450
fragaria_vesca	FvH4_1g06590 FvH4_1g06600
prunus_persica	Prupe.6G077000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092061 RchiOBHm_Chr2g0092331
rosa_laevigata	RLG00000016274 RLG00000016298 RLG00000016299 RLG00000016300
rosa_multiflora	Rmu_sc0000524.1_g000007 Rmu_sc0003289.1_g000010 Rmu_sc0003289.1_g000011 Rmu_sc0003289.1_g000012
rosa_roxburghii	Rroxscaffold_2G00149220 Rroxscaffold_2G00149230 Rroxscaffold_2G00149240 Rroxscaffold_2G00149480 Rroxscaffold_2G00149500
rosa_rugosa	Rorug02G0022800 Rorug02G0024800 Rorug02G0024800 Rorug02G0024900
rosa_samantha	Rh2AG068400 Rh2AG068500 Rh2AG070800 Rh2AG070900 Rh2BG067700 Rh2BG070300 Rh2BG070400 Rh2BG070500 Rh2CG069000 Rh2CG071500 Rh2CG071800 Rh2CG071900 Rh2DG067300 Rh2DG069300 Rh2DG069400
rosa_wichuraiana	Rw2G006140 Rw2G006150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	325
AccB7I	CCANNNNNTGG	1 cut(s)	357
AccBSI	CCGCTC	1 cut(s)	302
AccII	CGCG	1 cut(s)	446
AciI	CCGC	2 cut(s)	300, 308
AclWI	GGATC	2 cut(s)	17, 30
AcoI	YGGCCR	1 cut(s)	27
AcsI	RAATTY	1 cut(s)	375
AfiI	CCNNNNNNNGG	1 cut(s)	357
AjnI	CCWGG	2 cut(s)	203, 414
AluBI	AGCT	5 cut(s)	33, 55, 136, 176, 260
AluI	AGCT	5 cut(s)	33, 55, 136, 176, 260
Alw26I	GTCTC	2 cut(s)	235, 442
AlwI	GGATC	2 cut(s)	17, 30
AoxI	GGCC	3 cut(s)	27, 283, 347
ApeKI	GCWGC	2 cut(s)	173, 310
ApoI	RAATTY	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	446
AspS9I	GGNCC	1 cut(s)	348
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	4 cut(s)	196, 254, 410, 467
AsuII	TTCGAA	1 cut(s)	140
BamHI	GGATCC	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	185, 322
BccI	CCATC	1 cut(s)	69
BceAI	ACGGC	1 cut(s)	362
BciT130I	CCWGG	2 cut(s)	205, 416
BciVI	GTATCC	1 cut(s)	359
BclI	TGATCA	2 cut(s)	37, 186
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	2 cut(s)	235, 442
BfuAI	ACCTGC	1 cut(s)	325
BfuI	GTATCC	1 cut(s)	359
BglI	GCCNNNNNGGC	1 cut(s)	346
BisI	GCNGC	3 cut(s)	174, 300, 311
BlsI	GCNGC	3 cut(s)	175, 301, 312
Bme1390I	CCNGG	3 cut(s)	205, 416, 479
BmgT120I	GGNCC	1 cut(s)	348
BmiI	GGNNCC	4 cut(s)	24, 71, 121, 432
BmrFI	CCNGG	3 cut(s)	205, 416, 479
BmsI	GCATC	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	227
BpmI	CTGGAG	1 cut(s)	300
Bpu14I	TTCGAA	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	479
BsaAI	YACGTR	1 cut(s)	471
BsaJI	CCNNGG	2 cut(s)	351, 415
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse1I	ACTGG	2 cut(s)	174, 289
BseBI	CCWGG	2 cut(s)	205, 416
BseDI	CCNNGG	2 cut(s)	351, 415
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseNI	ACTGG	2 cut(s)	174, 289
BseXI	GCAGC	2 cut(s)	185, 322
Bsh1236I	CGCG	1 cut(s)	446
BshFI	GGCC	3 cut(s)	29, 285, 349
BsiSI	CCGG	2 cut(s)	26, 478
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmAI	GTCTC	2 cut(s)	235, 442
BsmI	GAATGC	1 cut(s)	488
BsnI	GGCC	3 cut(s)	29, 285, 349
Bsp119I	TTCGAA	1 cut(s)	140
Bsp143I	GATC	4 cut(s)	22, 37, 186, 490
BspACI	CCGC	2 cut(s)	300, 308
BspANI	GGCC	3 cut(s)	29, 285, 349
BspFNI	CGCG	1 cut(s)	446
BspLI	GGNNCC	4 cut(s)	24, 71, 121, 432
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	2 cut(s)	17, 30
BspT104I	TTCGAA	1 cut(s)	140
BsrBI	CCGCTC	1 cut(s)	302
BsrI	ACTGG	2 cut(s)	174, 289
BssECI	CCNNGG	2 cut(s)	351, 415
BssMI	GATC	4 cut(s)	22, 37, 186, 490
BssT1I	CCWWGG	1 cut(s)	351
Bst2UI	CCWGG	2 cut(s)	205, 416
BstBAI	YACGTR	1 cut(s)	471
BstBI	TTCGAA	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	446
BstHHI	GCGC	1 cut(s)	446
BstKTI	GATC	4 cut(s)	25, 40, 189, 493
BstMAI	GTCTC	2 cut(s)	235, 442
BstMBI	GATC	4 cut(s)	22, 37, 186, 490
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 346
BstNI	CCWGG	2 cut(s)	205, 416
BstSCI	CCNGG	3 cut(s)	203, 414, 477
BstSNI	TACGTA	1 cut(s)	471
BstUI	CGCG	1 cut(s)	446
BstV1I	GCAGC	2 cut(s)	185, 322
BstV2I	GAAGAC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BsuI	GTATCC	1 cut(s)	359
BsuRI	GGCC	3 cut(s)	29, 285, 349
BtsIMutI	CAGTG	1 cut(s)	196
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	31
CfoI	GCGC	1 cut(s)	446
Cfr13I	GGNCC	1 cut(s)	348
DpnI	GATC	4 cut(s)	24, 39, 188, 492
DpnII	GATC	4 cut(s)	22, 37, 186, 490
EaeI	YGGCCR	1 cut(s)	27
Eco105I	TACGTA	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	351
Eco32I	GATATC	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	203, 414
EcoRV	GATATC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	351
EcoT22I	ATGCAT	1 cut(s)	488
ErhI	CCWWGG	1 cut(s)	351
FaiI	YATR	6 cut(s)	36, 108, 131, 372, 468, 538
FalI	AAGNNNNNCTT	2 cut(s)	249, 281
FbaI	TGATCA	2 cut(s)	37, 186
Fnu4HI	GCNGC	3 cut(s)	174, 300, 311
Fsp4HI	GCNGC	3 cut(s)	174, 300, 311
GlaI	GCGC	1 cut(s)	445
GluI	GCNGC	3 cut(s)	174, 300, 311
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	3 cut(s)	29, 285, 349
HapII	CCGG	2 cut(s)	26, 478
HhaI	GCGC	1 cut(s)	446
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	2 cut(s)	26, 478
HphI	GGTGA	4 cut(s)	196, 254, 410, 467
Hpy188I	TCNGA	4 cut(s)	42, 51, 390, 516
Hpy188III	TCNNGA	1 cut(s)	279
Hpy99I	CGWCG	1 cut(s)	348
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	2 cut(s)	97, 486
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 346
HpySE526I	ACGT	1 cut(s)	470
HspAI	GCGC	1 cut(s)	444
Ksp22I	TGATCA	2 cut(s)	37, 186
Kzo9I	GATC	4 cut(s)	22, 37, 186, 490
LmnI	GCTCC	3 cut(s)	60, 69, 307
Lsp1109I	GCAGC	2 cut(s)	185, 322
LweI	GCATC	1 cut(s)	84
MaeII	ACGT	1 cut(s)	470
MaeIII	GTNAC	3 cut(s)	76, 291, 323
MalI	GATC	4 cut(s)	24, 39, 188, 492
MbiI	CCGCTC	1 cut(s)	302
MboI	GATC	4 cut(s)	22, 37, 186, 490
MboII	GAAGA	4 cut(s)	25, 232, 238, 241
MflI	RGATCY	1 cut(s)	22
MluCI	AATT	1 cut(s)	375
MnlI	CCTC	4 cut(s)	3, 210, 275, 421
Mph1103I	ATGCAT	1 cut(s)	488
MseI	TTAA	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	2 cut(s)	26, 478
MspR9I	CCNGG	3 cut(s)	205, 416, 479
Mva1269I	GAATGC	1 cut(s)	488
MvaI	CCWGG	2 cut(s)	205, 416
MvnI	CGCG	1 cut(s)	446
MwoI	GCNNNNNNNGC	2 cut(s)	103, 346
NciI	CCSGG	1 cut(s)	479
NdeII	GATC	4 cut(s)	22, 37, 186, 490
NlaIV	GGNNCC	4 cut(s)	24, 71, 121, 432
NmeAIII	GCCGAG	1 cut(s)	98
NsiI	ATGCAT	1 cut(s)	488
NspV	TTCGAA	1 cut(s)	140
PctI	GAATGC	1 cut(s)	488
PfeI	GAWTC	1 cut(s)	275
PflMI	CCANNNNNTGG	1 cut(s)	357
PkrI	GCNGC	3 cut(s)	175, 301, 312
Ppu21I	YACGTR	1 cut(s)	471
Psp6I	CCWGG	2 cut(s)	203, 414
PspGI	CCWGG	2 cut(s)	203, 414
PspN4I	GGNNCC	4 cut(s)	24, 71, 121, 432
PspPI	GGNCC	1 cut(s)	348
PsuI	RGATCY	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	3 cut(s)	174, 300, 311
Sau3AI	GATC	4 cut(s)	22, 37, 186, 490
Sau96I	GGNCC	1 cut(s)	348
ScrFI	CCNGG	3 cut(s)	205, 416, 479
SfaNI	GCATC	1 cut(s)	84
SfuI	TTCGAA	1 cut(s)	140
SnaBI	TACGTA	1 cut(s)	471
Sse9I	AATT	1 cut(s)	375
SsiI	CCGC	2 cut(s)	300, 308
StyD4I	CCNGG	3 cut(s)	203, 414, 477
StyI	CCWWGG	1 cut(s)	351
TaiI	ACGT	1 cut(s)	473
TaqI	TCGA	3 cut(s)	140, 147, 273
TasI	AATT	1 cut(s)	375
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	2 cut(s)	173, 310
TspDTI	ATGAA	4 cut(s)	17, 146, 248, 387
TspRI	CASTG	1 cut(s)	196
Van91I	CCANNNNNTGG	1 cut(s)	357
XapI	RAATTY	1 cut(s)	375
Zsp2I	ATGCAT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.