Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002220

Physical Location & Seq

Genomic Coordinates Reverse (-)

5276055 .. 5276582

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G077000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGTATCGGCAGCTCCTCTGCCTCTTCCTCTTTCGCTACCGCCTTCACCGCCACCAGAGCTTGGTTATGTACGCACCGTGGTGCTGATGCTATTATGCGTTCTAATAGTAGCCGCCATCATTTATGGGATCCTCAGGGAAAATGCTGCTGATCAAAGAGTACATCCAACGCATGACATTGAATCTGGGGAACCAACAATAACAACACCATTAACCGCACCACCAAGAACGAGAAGATCAGCCAGAAGACCGCCGCTGCGGCCACGGCTAATCTGCTGTGGTATACCTTTCAAGTATCGAGTGGACAAGAGAGTTGGATTTCACAGTGACGAGTGTGTTATTTGCATGGAGGAGTTTGAGGAAGAAGATAAGTGCAGGGTTCTTAAGTGTGAGCATACGTTTCACAGAGGATGCATTGAGAAGTGGCTAGCTAAGGGTACCAGTTGTCCGCTTTGTCGTGATTCTGTTTATGTCTTGCAAGGGGATCAATATCCGCTTTACCCATACTTGAATATGTATAATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

176

Amino Acids

19.85

Weight (kDa)

8.04

Isoelectric Point (pI)

58.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51930 AT5G41430 AT5G41440 AT5G41450
fragaria_vesca	FvH4_1g06590 FvH4_1g06600
prunus_persica	Prupe.6G077000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092061 RchiOBHm_Chr2g0092331
rosa_laevigata	RLG00000016274 RLG00000016298 RLG00000016299 RLG00000016300
rosa_multiflora	Rmu_sc0000524.1_g000007 Rmu_sc0003289.1_g000010 Rmu_sc0003289.1_g000011 Rmu_sc0003289.1_g000012
rosa_roxburghii	Rroxscaffold_2G00149220 Rroxscaffold_2G00149230 Rroxscaffold_2G00149240 Rroxscaffold_2G00149480 Rroxscaffold_2G00149500
rosa_rugosa	Rorug02G0022800 Rorug02G0024800 Rorug02G0024800 Rorug02G0024900
rosa_samantha	Rh2AG068400 Rh2AG068500 Rh2AG070800 Rh2AG070900 Rh2BG067700 Rh2BG070300 Rh2BG070400 Rh2BG070500 Rh2CG069000 Rh2CG071500 Rh2CG071800 Rh2CG071900 Rh2DG067300 Rh2DG069300 Rh2DG069400
rosa_wichuraiana	Rw2G006140 Rw2G006150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	437
AccB1I	GGYRCC	1 cut(s)	437
AccB7I	CCANNNNNTGG	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	283
AciI	CCGC	9 cut(s)	41, 50, 114, 216, 251, 254, 259, 449, 494
AclWI	GGATC	3 cut(s)	124, 137, 492
AcoI	YGGCCR	1 cut(s)	260
AfaI	GTAC	3 cut(s)	72, 162, 439
AfiI	CCNNNNNNNGG	1 cut(s)	62
AflII	CTTAAG	1 cut(s)	383
AgsI	TTSAA	3 cut(s)	182, 292, 511
AleI	CACNNNNGTG	1 cut(s)	80
AluBI	AGCT	3 cut(s)	14, 61, 431
AluI	AGCT	3 cut(s)	14, 61, 431
AlwI	GGATC	3 cut(s)	124, 137, 492
AoxI	GGCC	1 cut(s)	260
ApeKI	GCWGC	3 cut(s)	11, 146, 256
Asp718I	GGTACC	1 cut(s)	437
AsuHPI	GGTGA	1 cut(s)	39
AsuNHI	GCTAGC	1 cut(s)	427
AxyI	CCTNAGG	1 cut(s)	134
BamHI	GGATCC	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	253
BbvI	GCAGC	3 cut(s)	23, 133, 243
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	281
BclI	TGATCA	1 cut(s)	151
BfaI	CTAG	2 cut(s)	428, 526
BfrI	CTTAAG	1 cut(s)	383
BglI	GCCNNNNNGGC	1 cut(s)	259
BisI	GCNGC	6 cut(s)	12, 114, 147, 254, 257, 260
BlsI	GCNGC	6 cut(s)	13, 115, 148, 255, 258, 261
BmiI	GGNNCC	3 cut(s)	131, 192, 439
BmsI	GCATC	2 cut(s)	78, 401
BmtI	GCTAGC	1 cut(s)	431
BpiI	GAAGAC	1 cut(s)	253
Bpu10I	CCTNAGC	1 cut(s)	432
BsaBI	GATNNNNATC	1 cut(s)	489
BsaJI	CCNNGG	2 cut(s)	78, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	441
Bse21I	CCTNAGG	1 cut(s)	134
Bse8I	GATNNNNATC	1 cut(s)	489
BseDI	CCNNGG	2 cut(s)	78, 263
BseGI	GGATG	2 cut(s)	163, 416
BseJI	GATNNNNATC	1 cut(s)	489
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	148
BseNI	ACTGG	1 cut(s)	441
BseRI	GAGGAG	2 cut(s)	6, 365
BseXI	GCAGC	3 cut(s)	23, 133, 243
BsgI	GTGCAG	1 cut(s)	394
BshFI	GGCC	1 cut(s)	262
BshNI	GGYRCC	1 cut(s)	437
BslI	CCNNNNNNNGG	1 cut(s)	62
BsnI	GGCC	1 cut(s)	262
Bsp143I	GATC	4 cut(s)	129, 151, 236, 484
BspACI	CCGC	9 cut(s)	41, 50, 114, 216, 251, 254, 259, 449, 494
BspANI	GGCC	1 cut(s)	262
BspCNI	CTCAG	1 cut(s)	147
BspLI	GGNNCC	3 cut(s)	131, 192, 439
BspOI	GCTAGC	1 cut(s)	431
BspPI	GGATC	3 cut(s)	124, 137, 492
BspT107I	GGYRCC	1 cut(s)	437
BspTI	CTTAAG	1 cut(s)	383
BsrI	ACTGG	1 cut(s)	441
BssECI	CCNNGG	2 cut(s)	78, 263
BssMI	GATC	4 cut(s)	129, 151, 236, 484
BssNAI	GTATAC	1 cut(s)	284
Bst1107I	GTATAC	1 cut(s)	284
Bst4CI	ACNGT	2 cut(s)	79, 326
Bst6I	CTCTTC	1 cut(s)	30
BstAFI	CTTAAG	1 cut(s)	383
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	2 cut(s)	134, 432
BstDSI	CCRYGG	2 cut(s)	78, 263
BstF5I	GGATG	2 cut(s)	163, 416
BstKTI	GATC	4 cut(s)	132, 154, 239, 487
BstMBI	GATC	4 cut(s)	129, 151, 236, 484
BstMWI	GCNNNNNNNGC	4 cut(s)	49, 58, 259, 265
BstV1I	GCAGC	3 cut(s)	23, 133, 243
BstV2I	GAAGAC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BstZ17I	GTATAC	1 cut(s)	284
Bsu36I	CCTNAGG	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	262
BtgI	CCRYGG	2 cut(s)	78, 263
BtsCI	GGATG	2 cut(s)	163, 416
BtsIMutI	CAGTG	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	429
Csp6I	GTAC	3 cut(s)	71, 161, 438
CviAII	CATG	2 cut(s)	173, 346
CviJI	RGCY	8 cut(s)	14, 61, 113, 242, 262, 268, 427, 431
CviKI_1	RGCY	8 cut(s)	14, 61, 113, 242, 262, 268, 427, 431
CviQI	GTAC	3 cut(s)	71, 161, 438
DdeI	CTNAG	2 cut(s)	134, 432
DpnI	GATC	4 cut(s)	131, 153, 238, 486
DpnII	GATC	4 cut(s)	129, 151, 236, 484
EaeI	YGGCCR	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco81I	CCTNAGG	1 cut(s)	134
EcoT22I	ATGCAT	1 cut(s)	416
FaeI	CATG	2 cut(s)	176, 349
FatI	CATG	2 cut(s)	172, 345
FbaI	TGATCA	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	283
Fnu4HI	GCNGC	6 cut(s)	12, 114, 147, 254, 257, 260
FokI	GGATG	2 cut(s)	150, 423
Fsp4HI	GCNGC	6 cut(s)	12, 114, 147, 254, 257, 260
FspBI	CTAG	2 cut(s)	428, 526
GluI	GCNGC	6 cut(s)	12, 114, 147, 254, 257, 260
HaeIII	GGCC	1 cut(s)	262
Hin1II	CATG	2 cut(s)	176, 349
HinfI	GANTC	2 cut(s)	182, 461
HphI	GGTGA	1 cut(s)	39
Hpy166II	GTNNAC	2 cut(s)	284, 304
Hpy188III	TCNNGA	1 cut(s)	458
Hpy8I	GTNNAC	2 cut(s)	284, 304
HpyAV	CCTTC	1 cut(s)	54
HpyCH4III	ACNGT	2 cut(s)	79, 326
HpyCH4IV	ACGT	1 cut(s)	398
HpyCH4V	TGCA	4 cut(s)	345, 375, 414, 478
HpyF10VI	GCNNNNNNNGC	4 cut(s)	49, 58, 259, 265
HpyF3I	CTNAG	2 cut(s)	134, 432
HpySE526I	ACGT	1 cut(s)	398
Hsp92II	CATG	2 cut(s)	176, 349
KpnI	GGTACC	1 cut(s)	441
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	4 cut(s)	129, 151, 236, 484
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	6 cut(s)	69, 121, 171, 256, 361, 454
Lsp1109I	GCAGC	3 cut(s)	23, 133, 243
LweI	GCATC	2 cut(s)	78, 401
MaeI	CTAG	2 cut(s)	428, 526
MaeII	ACGT	1 cut(s)	398
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	4 cut(s)	131, 153, 238, 486
MboI	GATC	4 cut(s)	129, 151, 236, 484
MboII	GAAGA	5 cut(s)	17, 246, 258, 374, 377
MflI	RGATCY	1 cut(s)	129
MmeI	TCCRAC	2 cut(s)	191, 295
MnlI	CCTC	7 cut(s)	27, 33, 39, 143, 343, 352, 401
Mph1103I	ATGCAT	1 cut(s)	416
MseI	TTAA	2 cut(s)	212, 384
MslI	CAYNNNNRTG	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	256
MspCI	CTTAAG	1 cut(s)	383
MwoI	GCNNNNNNNGC	4 cut(s)	49, 58, 259, 265
NdeII	GATC	4 cut(s)	129, 151, 236, 484
NheI	GCTAGC	1 cut(s)	427
NlaIII	CATG	2 cut(s)	176, 349
NlaIV	GGNNCC	3 cut(s)	131, 192, 439
NmuCI	GTSAC	1 cut(s)	326
NsiI	ATGCAT	1 cut(s)	416
OliI	CACNNNNGTG	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	182, 461
PflMI	CCANNNNNTGG	1 cut(s)	62
PkrI	GCNGC	6 cut(s)	13, 115, 148, 255, 258, 261
PspN4I	GGNNCC	3 cut(s)	131, 192, 439
PsuI	RGATCY	1 cut(s)	129
RsaI	GTAC	3 cut(s)	72, 162, 439
RsaNI	GTAC	3 cut(s)	71, 161, 438
RseI	CAYNNNNRTG	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	212, 384
SatI	GCNGC	6 cut(s)	12, 114, 147, 254, 257, 260
Sau3AI	GATC	4 cut(s)	129, 151, 236, 484
SetI	ASST	5 cut(s)	16, 63, 289, 401, 433
SfaNI	GCATC	2 cut(s)	78, 401
SmiMI	CAYNNNNRTG	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
SsiI	CCGC	9 cut(s)	41, 50, 114, 216, 251, 254, 259, 449, 494
SspMI	CTAG	2 cut(s)	428, 526
TaaI	ACNGT	2 cut(s)	79, 326
TaiI	ACGT	1 cut(s)	401
TaqI	TCGA	1 cut(s)	298
TatI	WGTACW	1 cut(s)	160
TauI	GCSGC	3 cut(s)	116, 256, 262
TfiI	GAWTC	2 cut(s)	182, 461
Tru1I	TTAA	2 cut(s)	212, 384
Tru9I	TTAA	2 cut(s)	212, 384
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	3 cut(s)	11, 146, 256
Tsp45I	GTSAC	1 cut(s)	326
TspRI	CASTG	1 cut(s)	331
Van91I	CCANNNNNTGG	1 cut(s)	62
Vha464I	CTTAAG	1 cut(s)	383
XmiI	GTMKAC	1 cut(s)	283
XspI	CTAG	2 cut(s)	428, 526
Zsp2I	ATGCAT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.