Rh2DG067300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002220
Physical Location & Seq
Forward (+)
5068507 .. 5070197
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG067300.1

Sequence Viewer

Length: 372 bp
ATGGCAGAGAGTACAATTCTTAATTGTTTGTGTATAATATGCACCCCGTTTGCATTGTGTTTCATGATAATTCGCGGTTGTTTTATTTCAATATGTAGTTGTTTCAAGAAACAGAGGAAGATATTGGATCCGGCCAGCTATGATCAGAAAGTTCAGAAACTCCACCATCACAGGAGCCGAGTAACAATGTCAATGTTGATGCACAAACAGCATAGCAGGATTGGAACCAATGCTATGAAGCTTTCGAATATCGAATGGAAGTTGTTAATGGAACTGGCAGCTGTATTGGTGATCAGTGTAGTATTTGCCAGGAGAAGTTTGAGGAAGACGAAGAAGATGAGTGCGACTGTGCGTGATGCTTCGCAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.09

Weight (kDa)

10.07

Isoelectric Point (pI)

62.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 75
AciI CCGC 1 cut(s) 75
AclWI GGATC 2 cut(s) 122, 135
AcoI YGGCCR 1 cut(s) 132
AfaI GTAC 1 cut(s) 13
AgsI TTSAA 2 cut(s) 90, 106
AjnI CCWGG 1 cut(s) 308
AluBI AGCT 3 cut(s) 138, 241, 281
AluI AGCT 3 cut(s) 138, 241, 281
AlwI GGATC 2 cut(s) 122, 135
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 278
AsuHPI GGTGA 1 cut(s) 301
AsuII TTCGAA 1 cut(s) 245
BamHI GGATCC 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 332
BbvI GCAGC 1 cut(s) 290
BccI CCATC 1 cut(s) 174
BciT130I CCWGG 1 cut(s) 310
BclI TGATCA 2 cut(s) 142, 291
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
Bme1390I CCNGG 1 cut(s) 310
BmiI GGNNCC 3 cut(s) 129, 176, 226
BmrFI CCNGG 1 cut(s) 310
BmsI GCATC 2 cut(s) 189, 346
BpiI GAAGAC 1 cut(s) 332
Bpu14I TTCGAA 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 310
BseNI ACTGG 1 cut(s) 279
BseXI GCAGC 1 cut(s) 290
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 1 cut(s) 134
BsiSI CCGG 1 cut(s) 131
BsnI GGCC 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 245
Bsp143I GATC 3 cut(s) 127, 142, 291
BspACI CCGC 1 cut(s) 75
BspANI GGCC 1 cut(s) 134
BspFNI CGCG 1 cut(s) 75
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 3 cut(s) 129, 176, 226
BspPI GGATC 2 cut(s) 122, 135
BspT104I TTCGAA 1 cut(s) 245
BsrI ACTGG 1 cut(s) 279
BssMI GATC 3 cut(s) 127, 142, 291
Bst2UI CCWGG 1 cut(s) 310
Bst4CI ACNGT 1 cut(s) 349
BstBI TTCGAA 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 136
BstFNI CGCG 1 cut(s) 75
BstKTI GATC 3 cut(s) 130, 145, 294
BstMBI GATC 3 cut(s) 127, 142, 291
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstNI CCWGG 1 cut(s) 310
BstSCI CCNGG 1 cut(s) 308
BstUI CGCG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 290
BstV2I GAAGAC 1 cut(s) 332
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuRI GGCC 1 cut(s) 134
BtsIMutI CAGTG 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 136
CciI TCATGA 1 cut(s) 63
Csp6I GTAC 1 cut(s) 12
CviAII CATG 1 cut(s) 64
CviJI RGCY 5 cut(s) 134, 138, 177, 241, 281
CviKI_1 RGCY 5 cut(s) 134, 138, 177, 241, 281
CviQI GTAC 1 cut(s) 12
DpnI GATC 3 cut(s) 129, 144, 293
DpnII GATC 3 cut(s) 127, 142, 291
EaeI YGGCCR 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 308
FaeI CATG 1 cut(s) 67
FaiI YATR 7 cut(s) 35, 40, 65, 94, 141, 213, 236
FatI CATG 1 cut(s) 63
FbaI TGATCA 2 cut(s) 142, 291
Fnu4HI GCNGC 1 cut(s) 279
Fsp4HI GCNGC 1 cut(s) 279
GluI GCNGC 1 cut(s) 279
HaeIII GGCC 1 cut(s) 134
HapII CCGG 1 cut(s) 131
Hin1II CATG 1 cut(s) 67
HindIII AAGCTT 1 cut(s) 239
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 301
Hpy188I TCNGA 2 cut(s) 147, 156
Hpy188III TCNNGA 2 cut(s) 64, 106
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4V TGCA 3 cut(s) 42, 53, 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
Hsp92II CATG 1 cut(s) 67
Ksp22I TGATCA 2 cut(s) 142, 291
Kzo9I GATC 3 cut(s) 127, 142, 291
LmnI GCTCC 1 cut(s) 174
LpnPI CCDG 7 cut(s) 144, 148, 157, 202, 260, 295, 322
Lsp1109I GCAGC 1 cut(s) 290
LweI GCATC 2 cut(s) 189, 346
MaeIII GTNAC 1 cut(s) 181
MalI GATC 3 cut(s) 129, 144, 293
MboI GATC 3 cut(s) 127, 142, 291
MboII GAAGA 4 cut(s) 130, 337, 343, 346
MflI RGATCY 1 cut(s) 127
MluCI AATT 3 cut(s) 15, 22, 69
MnlI CCTC 2 cut(s) 108, 315
MseI TTAA 2 cut(s) 21, 266
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 310
MvaI CCWGG 1 cut(s) 310
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 208
NdeII GATC 3 cut(s) 127, 142, 291
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 3 cut(s) 129, 176, 226
NmeAIII GCCGAG 1 cut(s) 203
NspV TTCGAA 1 cut(s) 245
PagI TCATGA 1 cut(s) 63
PkrI GCNGC 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 308
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 3 cut(s) 129, 176, 226
PsuI RGATCY 1 cut(s) 127
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SaqAI TTAA 2 cut(s) 21, 266
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 3 cut(s) 127, 142, 291
ScrFI CCNGG 1 cut(s) 310
SetI ASST 3 cut(s) 140, 243, 283
SfaNI GCATC 2 cut(s) 189, 346
SfuI TTCGAA 1 cut(s) 245
Sse9I AATT 3 cut(s) 15, 22, 69
SsiI CCGC 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 308
TaaI ACNGT 1 cut(s) 349
TaqI TCGA 2 cut(s) 245, 252
TasI AATT 3 cut(s) 15, 22, 69
TatI WGTACW 1 cut(s) 11
Tru1I TTAA 2 cut(s) 21, 266
Tru9I TTAA 2 cut(s) 21, 266
TscAI CASTG 1 cut(s) 301
TseI GCWGC 1 cut(s) 278
TspDTI ATGAA 2 cut(s) 52, 251
TspRI CASTG 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.