Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002220

Physical Location & Seq

Genomic Coordinates Forward (+)

5311743 .. 5312099

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG070500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGAAGACGTGTCTTGGAGTTGATGACGAAATCCATGATATTGAAACCGGCACGCTACCAACAACTCCACCACAATCACCACAAACAGTGCAGCAACAGAAGCAGCAGAAGGCCCAAAGGGTTGAATCTTATGAAATTTTTCATCACCGAAAGGATGTGGAAGCTGTTGGATTTCACAGCGGAGATTGTGTTATTTGTTTGGGAGAGTTTGAGGAAGACGAAGAGTGCGCGATGCTTAAGAAATGTAAGCACACGTACCACCGTGACTGCATTGATAAGGTGAAAGAAGATTCGTGTCCGCTTTGTCGTCATAGTATCGATGTGAAAATAGAAAAACCTAGCAAATTGTTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

118

Amino Acids

13.56

Weight (kDa)

5.6

Isoelectric Point (pI)

59.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	62 - 103	4.5e-11	Ring finger domain
zf-RING_11	PF17123	62 - 91	8.3e-09	RING-like zinc finger
zf-RING_5	PF14634	62 - 104	2e-07	zinc-RING finger domain
zf-C3HC4_2	PF13923	63 - 102	2e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51930 AT5G41430 AT5G41440 AT5G41450
fragaria_vesca	FvH4_1g06590 FvH4_1g06600
prunus_persica	Prupe.6G077000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092061 RchiOBHm_Chr2g0092331
rosa_laevigata	RLG00000016274 RLG00000016298 RLG00000016299 RLG00000016300
rosa_multiflora	Rmu_sc0000524.1_g000007 Rmu_sc0003289.1_g000010 Rmu_sc0003289.1_g000011 Rmu_sc0003289.1_g000012
rosa_roxburghii	Rroxscaffold_2G00149220 Rroxscaffold_2G00149230 Rroxscaffold_2G00149240 Rroxscaffold_2G00149480 Rroxscaffold_2G00149500
rosa_rugosa	Rorug02G0022800 Rorug02G0024800 Rorug02G0024800 Rorug02G0024900
rosa_samantha	Rh2AG068400 Rh2AG068500 Rh2AG070800 Rh2AG070900 Rh2BG067700 Rh2BG070300 Rh2BG070400 Rh2BG070500 Rh2CG069000 Rh2CG071500 Rh2CG071800 Rh2CG071900 Rh2DG067300 Rh2DG069300 Rh2DG069400
rosa_wichuraiana	Rw2G006140 Rw2G006150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	230
AciI	CCGC	2 cut(s)	180, 299
AcsI	RAATTY	1 cut(s)	135
AfaI	GTAC	1 cut(s)	257
AflII	CTTAAG	1 cut(s)	236
AflIII	ACRYGT	2 cut(s)	8, 252
AgsI	TTSAA	2 cut(s)	44, 125
AjiI	CACGTC	1 cut(s)	9
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	2 cut(s)	91, 103
ApoI	RAATTY	1 cut(s)	135
Asp700I	GAANNNNTTC	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	3 cut(s)	69, 137, 292
BbsI	GAAGAC	2 cut(s)	11, 222
BbvI	GCAGC	2 cut(s)	103, 115
BfaI	CTAG	1 cut(s)	339
BfrI	CTTAAG	1 cut(s)	236
BisI	GCNGC	2 cut(s)	92, 104
BlsI	GCNGC	2 cut(s)	93, 105
BmgBI	CACGTC	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	112
BmsI	GCATC	1 cut(s)	222
BpiI	GAAGAC	2 cut(s)	11, 222
Bsa29I	ATCGAT	1 cut(s)	318
BsaAI	YACGTR	1 cut(s)	255
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bse118I	RCCGGY	1 cut(s)	47
BseCI	ATCGAT	1 cut(s)	318
BseGI	GGATG	1 cut(s)	160
BseXI	GCAGC	2 cut(s)	103, 115
BsgI	GTGCAG	1 cut(s)	110
Bsh1236I	CGCG	1 cut(s)	230
BshFI	GGCC	1 cut(s)	113
BshVI	ATCGAT	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	48
BsnI	GGCC	1 cut(s)	113
BspACI	CCGC	2 cut(s)	180, 299
BspANI	GGCC	1 cut(s)	113
BspDI	ATCGAT	1 cut(s)	318
BspFNI	CGCG	1 cut(s)	230
BspTI	CTTAAG	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	47
Bst4CI	ACNGT	2 cut(s)	88, 263
Bst6I	CTCTTC	1 cut(s)	216
BstAFI	CTTAAG	1 cut(s)	236
BstBAI	YACGTR	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	160
BstFNI	CGCG	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	230
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstUI	CGCG	1 cut(s)	230
BstV1I	GCAGC	2 cut(s)	103, 115
BstV2I	GAAGAC	2 cut(s)	11, 222
Bsu15I	ATCGAT	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	113
BsuTUI	ATCGAT	1 cut(s)	318
BtgZI	GCGATG	1 cut(s)	245
BtrI	CACGTC	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	53
CfoI	GCGC	1 cut(s)	230
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	112
ClaI	ATCGAT	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	2 cut(s)	113, 164
CviKI_1	RGCY	2 cut(s)	113, 164
CviQI	GTAC	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
FaeI	CATG	1 cut(s)	38
FaiI	YATR	3 cut(s)	36, 132, 312
FatI	CATG	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	92, 104
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	2 cut(s)	92, 104
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	2 cut(s)	92, 104
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	1 cut(s)	48
HhaI	GCGC	1 cut(s)	230
Hin1II	CATG	1 cut(s)	38
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HinfI	GANTC	2 cut(s)	125, 290
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	3 cut(s)	69, 137, 292
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	2 cut(s)	88, 263
HpyCH4IV	ACGT	2 cut(s)	8, 254
HpyCH4V	TGCA	2 cut(s)	91, 270
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpySE526I	ACGT	2 cut(s)	8, 254
Hsp92II	CATG	1 cut(s)	38
HspAI	GCGC	1 cut(s)	228
LpnPI	CCDG	1 cut(s)	61
Lsp1109I	GCAGC	2 cut(s)	103, 115
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	2 cut(s)	8, 254
MaeIII	GTNAC	1 cut(s)	263
MboII	GAAGA	4 cut(s)	16, 227, 233, 299
MluCI	AATT	2 cut(s)	135, 344
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	1 cut(s)	205
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	180
MspCI	CTTAAG	1 cut(s)	236
MspI	CCGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	38
NmuCI	GTSAC	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	2 cut(s)	125, 290
PkrI	GCNGC	2 cut(s)	93, 105
Ppu21I	YACGTR	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	112
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	2 cut(s)	92, 104
Sau96I	GGNCC	1 cut(s)	112
SetI	ASST	5 cut(s)	11, 166, 257, 282, 340
SfaNI	GCATC	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	2 cut(s)	135, 344
SsiI	CCGC	2 cut(s)	180, 299
SspMI	CTAG	1 cut(s)	339
TaaI	ACNGT	2 cut(s)	88, 263
TaiI	ACGT	2 cut(s)	11, 257
TaqI	TCGA	1 cut(s)	318
TasI	AATT	2 cut(s)	135, 344
TfiI	GAWTC	2 cut(s)	125, 290
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	2 cut(s)	91, 103
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	3 cut(s)	17, 131, 147
TspRI	CASTG	1 cut(s)	93
Vha464I	CTTAAG	1 cut(s)	236
XapI	RAATTY	1 cut(s)	135
XmnI	GAANNNNTTC	1 cut(s)	138
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.