Rh2DG069300

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002220
Physical Location & Seq
Forward (+)
5244853 .. 5245260
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG069300.1

Sequence Viewer

Length: 408 bp
ATGGCTCCATTTTACTATCCCCCATACTTCTTTTGTAAATCCGTCTCATATTGTTTCAAGAAGATGAAGATGTGTCTTGGAGTTGATGAAGAAATCCATGATATTGAAACCGGCACGCCACCAACAACTCTACCACAACCACCACGAGCAATATTGCAGCAACAGAAGCAGCAGAAGGCCCAAAGGGTTGAATCTTATGAAATTTTTTGTTACCGAAAGGATGTGGAAGCTGTTGGATTTCACAGCGGAGAGTGTGTTATTTGTCTGGGAGAGTTTGAAGAAGACGACGAGTGCGCGATGCTTAAAAAATGTAAGCACACGTACCACCGTGACTGCATTGATAAGGTGAAAGAAGATTCGTGTCCGCTTTGTCGTCATAGTATCGATGTGAAAATAGAAAAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

135

Amino Acids

15.74

Weight (kDa)

5.95

Isoelectric Point (pI)

65.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 84 - 125 3.2e-11 Ring finger domain
zf-RING_11 PF17123 84 - 113 9.3e-09 RING-like zinc finger
zf-RING_5 PF14634 84 - 126 2.3e-07 zinc-RING finger domain
zf-C3HC4_2 PF13923 84 - 124 1.9e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 296
AciI CCGC 2 cut(s) 246, 365
AcsI RAATTY 1 cut(s) 201
AfaI GTAC 1 cut(s) 323
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 4 cut(s) 58, 107, 191, 278
AluBI AGCT 1 cut(s) 230
AluI AGCT 1 cut(s) 230
Alw26I GTCTC 1 cut(s) 49
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 2 cut(s) 157, 169
ApoI RAATTY 1 cut(s) 201
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 1 cut(s) 178
AsuHPI GGTGA 1 cut(s) 358
BauI CACGAG 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 288
BbvI GCAGC 2 cut(s) 169, 181
BcoDI GTCTC 1 cut(s) 49
BfaI CTAG 1 cut(s) 406
BisI GCNGC 2 cut(s) 158, 170
BlsI GCNGC 2 cut(s) 159, 171
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 288
Bsa29I ATCGAT 1 cut(s) 384
BsaAI YACGTR 1 cut(s) 321
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bse118I RCCGGY 1 cut(s) 110
BseCI ATCGAT 1 cut(s) 384
BseGI GGATG 1 cut(s) 226
BseXI GCAGC 2 cut(s) 169, 181
Bsh1236I CGCG 1 cut(s) 296
BshFI GGCC 1 cut(s) 179
BshVI ATCGAT 1 cut(s) 384
BsiSI CCGG 1 cut(s) 111
BsmAI GTCTC 1 cut(s) 49
BsmBI CGTCTC 1 cut(s) 49
BsnI GGCC 1 cut(s) 179
BspACI CCGC 2 cut(s) 246, 365
BspANI GGCC 1 cut(s) 179
BspDI ATCGAT 1 cut(s) 384
BspFNI CGCG 1 cut(s) 296
BspLI GGNNCC 1 cut(s) 6
BsrFI RCCGGY 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 110
BssSI CACGAG 1 cut(s) 144
Bst2BI CACGAG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 329
BstBAI YACGTR 1 cut(s) 321
BstC8I GCNNGC 1 cut(s) 116
BstF5I GGATG 1 cut(s) 226
BstFNI CGCG 1 cut(s) 296
BstHHI GCGC 1 cut(s) 296
BstMAI GTCTC 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 2 cut(s) 169, 181
BstV2I GAAGAC 1 cut(s) 288
Bsu15I ATCGAT 1 cut(s) 384
BsuRI GGCC 1 cut(s) 179
BsuTUI ATCGAT 1 cut(s) 384
BtgZI GCGATG 1 cut(s) 311
BtsCI GGATG 1 cut(s) 226
Cac8I GCNNGC 1 cut(s) 116
CfoI GCGC 1 cut(s) 296
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 178
ClaI ATCGAT 1 cut(s) 384
Csp6I GTAC 1 cut(s) 322
CviAII CATG 1 cut(s) 98
CviJI RGCY 3 cut(s) 5, 179, 230
CviKI_1 RGCY 3 cut(s) 5, 179, 230
CviQI GTAC 1 cut(s) 322
Esp3I CGTCTC 1 cut(s) 49
FaeI CATG 1 cut(s) 101
FaiI YATR 5 cut(s) 25, 49, 99, 198, 378
FatI CATG 1 cut(s) 97
Fnu4HI GCNGC 2 cut(s) 158, 170
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 2 cut(s) 158, 170
FspBI CTAG 1 cut(s) 406
GlaI GCGC 1 cut(s) 295
GluI GCNGC 2 cut(s) 158, 170
HaeIII GGCC 1 cut(s) 179
HapII CCGG 1 cut(s) 111
HhaI GCGC 1 cut(s) 296
Hin1II CATG 1 cut(s) 101
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HinfI GANTC 2 cut(s) 191, 356
HpaII CCGG 1 cut(s) 111
HphI GGTGA 1 cut(s) 358
Hpy188III TCNNGA 1 cut(s) 58
Hpy99I CGWCG 1 cut(s) 290
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 2 cut(s) 157, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpySE526I ACGT 1 cut(s) 320
Hsp92II CATG 1 cut(s) 101
HspAI GCGC 1 cut(s) 294
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 2 cut(s) 124, 251
Lsp1109I GCAGC 2 cut(s) 169, 181
LweI GCATC 1 cut(s) 288
MaeI CTAG 1 cut(s) 406
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 2 cut(s) 209, 329
MboII GAAGA 6 cut(s) 73, 79, 101, 290, 293, 365
MluCI AATT 1 cut(s) 201
MmeI TCCRAC 1 cut(s) 214
MseI TTAA 1 cut(s) 303
MspA1I CMGCKG 1 cut(s) 246
MspI CCGG 1 cut(s) 111
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 166
NlaIII CATG 1 cut(s) 101
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 329
PfeI GAWTC 2 cut(s) 191, 356
PkrI GCNGC 2 cut(s) 159, 171
Ppu21I YACGTR 1 cut(s) 321
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 178
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 2 cut(s) 158, 170
Sau96I GGNCC 1 cut(s) 178
SetI ASST 3 cut(s) 232, 323, 348
SfaNI GCATC 1 cut(s) 288
Sse9I AATT 1 cut(s) 201
SsiI CCGC 2 cut(s) 246, 365
SspI AATATT 1 cut(s) 153
SspMI CTAG 1 cut(s) 406
TaaI ACNGT 1 cut(s) 329
TaiI ACGT 1 cut(s) 323
TaqI TCGA 1 cut(s) 384
TasI AATT 1 cut(s) 201
TfiI GAWTC 2 cut(s) 191, 356
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 2 cut(s) 157, 169
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 3 cut(s) 80, 102, 213
TspGWI ACGGA 1 cut(s) 31
XapI RAATTY 1 cut(s) 201
XspI CTAG 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.