AT5G41430

Contains the following InterPro domains Zinc finger, RING-type (InterPro IPR001841), Zinc finger, C3HC4 RING-type (InterPro IPR018957)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002220
Physical Location & Seq
Reverse (-)
16586119 .. 16586604
486 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41430.1

Sequence Viewer

Length: 486 bp
ATGATAGAATCTATGCCCTCGCTGGATGTGTCTTCAATAGTCGTTACAGGGGCCATTTTAATAGTCTTGTTCACCTTATATATCATCTCTGACTCTTGCAACAAGTATATTCAACCTCCTACGGAACTAGCTCTTGAGACACATCAAAACTCTCATCCCTCACTTCCTCCTCTGCCTGTGCCTCTGCCTCTGCCTCTGCCTCAGCCTCAGCCTCAGCCTCAGCAAGACAATGAAACCGGACATCTAATGCCGCTTCATTCTCAACTAGAATTTAAAATCGGTTATAGGGCATCGATCGAGGAAATGGAGTTTAAAGATATTGAAAAAGAAGGATTTGATGAGATTGGTTGTTCAATTTGTCTTGAAGAGTTAGAAGATGGCCATGAGATTATCCGTATAAAGAAGTGTAGACATGTTTTCCATCGTTCTTGTATTGATTCTTGGCTGAAACAGAATCGAAGCTGCCCAAATTGTCGATGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

161

Amino Acids

18.35

Weight (kDa)

5.17

Isoelectric Point (pI)

75.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 117 - 159 5.8e-15 Ring finger domain
zf-C3HC4_2 PF13923 117 - 158 1.4e-11 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 117 - 158 1.5e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 117 - 145 2e-08 RING-like zinc finger
zf-RING_UBOX PF13445 117 - 156 6.2e-08 RING-type zinc-finger
zf-rbx1 PF12678 125 - 159 1.2e-08 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 409
AciI CCGC 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 1 cut(s) 269
AflIII ACRYGT 1 cut(s) 412
AgsI TTSAA 5 cut(s) 36, 113, 323, 354, 365
AluBI AGCT 2 cut(s) 131, 462
AluI AGCT 2 cut(s) 131, 462
Alw26I GTCTC 1 cut(s) 131
AoxI GGCC 2 cut(s) 51, 379
ApeKI GCWGC 1 cut(s) 462
ApoI RAATTY 1 cut(s) 269
AspS9I GGNCC 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 64
BalI TGGCCA 1 cut(s) 381
BbsI GAAGAC 1 cut(s) 24
BbvCI CCTCAGC 4 cut(s) 201, 207, 213, 219
BbvI GCAGC 1 cut(s) 449
BccI CCATC 2 cut(s) 371, 429
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 2 cut(s) 128, 266
BisI GCNGC 2 cut(s) 251, 463
BlsI GCNGC 2 cut(s) 252, 464
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 52
BmsI GCATC 1 cut(s) 299
BpiI GAAGAC 1 cut(s) 24
Bpu10I CCTNAGC 4 cut(s) 201, 207, 213, 219
BpuEI CTTGAG 1 cut(s) 155
Bsa29I ATCGAT 1 cut(s) 293
BsaWI WCCGGW 1 cut(s) 236
BseCI ATCGAT 1 cut(s) 293
BseGI GGATG 2 cut(s) 31, 154
BseMII CTCAG 4 cut(s) 215, 221, 227, 233
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 1 cut(s) 449
Bsh1285I CGRYCG 1 cut(s) 297
BshFI GGCC 2 cut(s) 53, 381
BshVI ATCGAT 1 cut(s) 293
BsiEI CGRYCG 1 cut(s) 297
BsiSI CCGG 1 cut(s) 237
BsmAI GTCTC 1 cut(s) 131
BsnI GGCC 2 cut(s) 53, 381
Bsp143I GATC 1 cut(s) 294
BspACI CCGC 1 cut(s) 251
BspANI GGCC 2 cut(s) 53, 381
BspCNI CTCAG 4 cut(s) 214, 220, 226, 232
BspDI ATCGAT 1 cut(s) 293
BspLI GGNNCC 1 cut(s) 52
BssMI GATC 1 cut(s) 294
Bst6I CTCTTC 1 cut(s) 360
BstDEI CTNAG 4 cut(s) 201, 207, 213, 219
BstF5I GGATG 2 cut(s) 31, 154
BstKTI GATC 1 cut(s) 297
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 1 cut(s) 294
BstMCI CGRYCG 1 cut(s) 297
BstNSI RCATGY 1 cut(s) 416
BstV1I GCAGC 1 cut(s) 449
BstV2I GAAGAC 1 cut(s) 24
Bsu15I ATCGAT 1 cut(s) 293
BsuRI GGCC 2 cut(s) 53, 381
BsuTUI ATCGAT 1 cut(s) 293
BtsCI GGATG 2 cut(s) 31, 154
Cfr13I GGNCC 1 cut(s) 51
ClaI ATCGAT 1 cut(s) 293
CviAII CATG 2 cut(s) 383, 413
CviJI RGCY 8 cut(s) 53, 131, 205, 211, 217, 381, 445, 462
CviKI_1 RGCY 8 cut(s) 53, 131, 205, 211, 217, 381, 445, 462
DdeI CTNAG 4 cut(s) 201, 207, 213, 219
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
DraI TTTAAA 2 cut(s) 274, 313
EaeI YGGCCR 1 cut(s) 379
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
FaeI CATG 2 cut(s) 386, 416
FaiI YATR 8 cut(s) 14, 79, 81, 108, 285, 384, 398, 414
FatI CATG 2 cut(s) 382, 412
FblI GTMKAC 1 cut(s) 409
Fnu4HI GCNGC 2 cut(s) 251, 463
FokI GGATG 2 cut(s) 38, 141
Fsp4HI GCNGC 2 cut(s) 251, 463
FspBI CTAG 2 cut(s) 128, 266
GluI GCNGC 2 cut(s) 251, 463
HaeIII GGCC 2 cut(s) 53, 381
HapII CCGG 1 cut(s) 237
Hin1II CATG 2 cut(s) 386, 416
HinfI GANTC 4 cut(s) 8, 92, 437, 454
HpaII CCGG 1 cut(s) 237
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 2 cut(s) 72, 410
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 2 cut(s) 134, 362
Hpy8I GTNNAC 2 cut(s) 72, 410
HpyAV CCTTC 1 cut(s) 323
HpyCH4V TGCA 1 cut(s) 99
HpyF3I CTNAG 4 cut(s) 201, 207, 213, 219
Hsp92II CATG 2 cut(s) 386, 416
Kzo9I GATC 1 cut(s) 294
LpnPI CCDG 4 cut(s) 8, 33, 189, 250
Lsp1109I GCAGC 1 cut(s) 449
LweI GCATC 1 cut(s) 299
MaeI CTAG 2 cut(s) 128, 266
MaeIII GTNAC 1 cut(s) 43
MalI GATC 1 cut(s) 296
MboI GATC 1 cut(s) 294
MboII GAAGA 3 cut(s) 24, 377, 386
MlsI TGGCCA 1 cut(s) 381
MluCI AATT 3 cut(s) 269, 354, 469
MluNI TGGCCA 1 cut(s) 381
MlyI GAGTC 1 cut(s) 86
Mox20I TGGCCA 1 cut(s) 381
MscI TGGCCA 1 cut(s) 381
MseI TTAA 3 cut(s) 59, 273, 312
Msp20I TGGCCA 1 cut(s) 381
MspI CCGG 1 cut(s) 237
NdeII GATC 1 cut(s) 294
NlaIII CATG 2 cut(s) 386, 416
NlaIV GGNNCC 1 cut(s) 52
NspI RCATGY 1 cut(s) 416
PciI ACATGT 1 cut(s) 412
PfeI GAWTC 3 cut(s) 8, 437, 454
PkrI GCNGC 2 cut(s) 252, 464
Ple19I CGATCG 1 cut(s) 297
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
PscI ACATGT 1 cut(s) 412
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 1 cut(s) 51
PvuI CGATCG 1 cut(s) 297
SaqAI TTAA 3 cut(s) 59, 273, 312
SatI GCNGC 2 cut(s) 251, 463
Sau3AI GATC 1 cut(s) 294
Sau96I GGNCC 1 cut(s) 51
SchI GAGTC 1 cut(s) 86
SetI ASST 4 cut(s) 77, 118, 133, 464
SfaNI GCATC 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 3 cut(s) 269, 354, 469
SsiI CCGC 1 cut(s) 251
SspMI CTAG 2 cut(s) 128, 266
TaqI TCGA 4 cut(s) 293, 297, 457, 475
TasI AATT 3 cut(s) 269, 354, 469
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 3 cut(s) 8, 437, 454
Tru1I TTAA 3 cut(s) 59, 273, 312
Tru9I TTAA 3 cut(s) 59, 273, 312
TseI GCWGC 1 cut(s) 462
TspDTI ATGAA 2 cut(s) 245, 246
TspGWI ACGGA 2 cut(s) 137, 383
XapI RAATTY 1 cut(s) 269
XceI RCATGY 1 cut(s) 416
XmiI GTMKAC 1 cut(s) 409
XspI CTAG 2 cut(s) 128, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.