Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003289.1

Orthogroup ID

OG0002220

Physical Location & Seq

Genomic Coordinates Reverse (-)

45133 .. 45579

Gene Structure 447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003289.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgcatccgtttcacccctatctggtttttgtagtggtggtcgcagtccttctctgtcttccatgtcgagccgttacctacatctacaagaagatgaagatgtgtcttggagttgatgaagaaatccatgatattgaaaccggcacgataccaacaactccaccacaatcaccacaaacagtgcagcaacagaagcagcagaaggcccaaagggttgattcttacgaaatttttcatcaccgaaaggatgtggaagctgttggatttcacagcggagattgtgttatttgtttgggagagtttgaggaagacgaagagtgcgcgatgcttaagaaatgtaagcacacgtaccaccgtgactgcattgataaggtgaaagaagattcgtgtccgctttgtcgtcataggatcgatgtgaaaacagaaaaacctaacaaattgttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

148

Amino Acids

17.16

Weight (kDa)

6.49

Isoelectric Point (pI)

59.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51930 AT5G41430 AT5G41440 AT5G41450
fragaria_vesca	FvH4_1g06590 FvH4_1g06600
prunus_persica	Prupe.6G077000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0092061 RchiOBHm_Chr2g0092331
rosa_laevigata	RLG00000016274 RLG00000016298 RLG00000016299 RLG00000016300
rosa_multiflora	Rmu_sc0000524.1_g000007 Rmu_sc0003289.1_g000010 Rmu_sc0003289.1_g000011 Rmu_sc0003289.1_g000012
rosa_roxburghii	Rroxscaffold_2G00149220 Rroxscaffold_2G00149230 Rroxscaffold_2G00149240 Rroxscaffold_2G00149480 Rroxscaffold_2G00149500
rosa_rugosa	Rorug02G0022800 Rorug02G0024800 Rorug02G0024800 Rorug02G0024900
rosa_samantha	Rh2AG068400 Rh2AG068500 Rh2AG070800 Rh2AG070900 Rh2BG067700 Rh2BG070300 Rh2BG070400 Rh2BG070500 Rh2CG069000 Rh2CG071500 Rh2CG071800 Rh2CG071900 Rh2DG067300 Rh2DG069300 Rh2DG069400
rosa_wichuraiana	Rw2G006140 Rw2G006150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	323
AciI	CCGC	2 cut(s)	273, 392
AclWI	GGATC	1 cut(s)	416
AcsI	RAATTY	1 cut(s)	228
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	1 cut(s)	22
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	1 cut(s)	137
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
AlwI	GGATC	1 cut(s)	416
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	2 cut(s)	184, 196
ApoI	RAATTY	1 cut(s)	228
Asp700I	GAANNNNTTC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	205
AsuHPI	GGTGA	4 cut(s)	5, 162, 230, 385
BbsI	GAAGAC	2 cut(s)	50, 315
BbvI	GCAGC	2 cut(s)	196, 208
BceAI	ACGGC	1 cut(s)	56
BfrI	CTTAAG	1 cut(s)	329
BisI	GCNGC	2 cut(s)	185, 197
BlsI	GCNGC	2 cut(s)	186, 198
BmgT120I	GGNCC	1 cut(s)	205
BmsI	GCATC	2 cut(s)	13, 315
BpiI	GAAGAC	2 cut(s)	50, 315
Bsa29I	ATCGAT	1 cut(s)	411
BsaAI	YACGTR	1 cut(s)	348
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse118I	RCCGGY	1 cut(s)	140
BseCI	ATCGAT	1 cut(s)	411
BseGI	GGATG	2 cut(s)	4, 253
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseXI	GCAGC	2 cut(s)	196, 208
BsgI	GTGCAG	1 cut(s)	203
Bsh1236I	CGCG	1 cut(s)	323
BshFI	GGCC	1 cut(s)	206
BshVI	ATCGAT	1 cut(s)	411
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	22
BsnI	GGCC	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	408
BspACI	CCGC	2 cut(s)	273, 392
BspANI	GGCC	1 cut(s)	206
BspDI	ATCGAT	1 cut(s)	411
BspFNI	CGCG	1 cut(s)	323
BspPI	GGATC	1 cut(s)	416
BspTI	CTTAAG	1 cut(s)	329
BsrFI	RCCGGY	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	140
BssMI	GATC	1 cut(s)	408
Bst4CI	ACNGT	2 cut(s)	181, 356
Bst6I	CTCTTC	1 cut(s)	309
BstAFI	CTTAAG	1 cut(s)	329
BstBAI	YACGTR	1 cut(s)	348
BstF5I	GGATG	2 cut(s)	4, 253
BstFNI	CGCG	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	1 cut(s)	411
BstMBI	GATC	1 cut(s)	408
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstUI	CGCG	1 cut(s)	323
BstV1I	GCAGC	2 cut(s)	196, 208
BstV2I	GAAGAC	2 cut(s)	50, 315
Bsu15I	ATCGAT	1 cut(s)	411
BsuRI	GGCC	1 cut(s)	206
BsuTUI	ATCGAT	1 cut(s)	411
BtgZI	GCGATG	1 cut(s)	338
BtsCI	GGATG	2 cut(s)	4, 253
BtsIMutI	CAGTG	1 cut(s)	186
CfoI	GCGC	1 cut(s)	323
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	205
ClaI	ATCGAT	1 cut(s)	411
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	2 cut(s)	63, 128
CviJI	RGCY	3 cut(s)	71, 206, 257
CviKI_1	RGCY	3 cut(s)	71, 206, 257
CviQI	GTAC	1 cut(s)	349
DpnI	GATC	1 cut(s)	410
DpnII	GATC	1 cut(s)	408
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	66, 131
FaiI	YATR	3 cut(s)	64, 129, 405
FatI	CATG	2 cut(s)	62, 127
Fnu4HI	GCNGC	2 cut(s)	185, 197
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	2 cut(s)	185, 197
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	2 cut(s)	185, 197
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	2 cut(s)	66, 131
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HinfI	GANTC	2 cut(s)	218, 383
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	4 cut(s)	5, 162, 230, 385
HpyAV	CCTTC	2 cut(s)	59, 196
HpyCH4III	ACNGT	2 cut(s)	181, 356
HpyCH4IV	ACGT	1 cut(s)	347
HpyCH4V	TGCA	3 cut(s)	4, 184, 363
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpySE526I	ACGT	1 cut(s)	347
Hsp92II	CATG	2 cut(s)	66, 131
HspAI	GCGC	1 cut(s)	321
Kzo9I	GATC	1 cut(s)	408
LpnPI	CCDG	2 cut(s)	8, 154
Lsp1109I	GCAGC	2 cut(s)	196, 208
LweI	GCATC	2 cut(s)	13, 315
MaeII	ACGT	1 cut(s)	347
MaeIII	GTNAC	2 cut(s)	73, 356
MalI	GATC	1 cut(s)	410
MboI	GATC	1 cut(s)	408
MboII	GAAGA	7 cut(s)	50, 103, 109, 131, 320, 326, 392
MluCI	AATT	2 cut(s)	228, 437
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	1 cut(s)	298
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	273
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	1 cut(s)	193
NdeII	GATC	1 cut(s)	408
NlaIII	CATG	2 cut(s)	66, 131
NmuCI	GTSAC	1 cut(s)	356
NsiI	ATGCAT	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	218, 383
PkrI	GCNGC	2 cut(s)	186, 198
Ppu21I	YACGTR	1 cut(s)	348
PspPI	GGNCC	1 cut(s)	205
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	2 cut(s)	185, 197
Sau3AI	GATC	1 cut(s)	408
Sau96I	GGNCC	1 cut(s)	205
SetI	ASST	5 cut(s)	80, 259, 350, 375, 433
SfaNI	GCATC	2 cut(s)	13, 315
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	2 cut(s)	228, 437
SsiI	CCGC	2 cut(s)	273, 392
TaaI	ACNGT	2 cut(s)	181, 356
TaiI	ACGT	1 cut(s)	350
TaqI	TCGA	2 cut(s)	67, 411
TasI	AATT	2 cut(s)	228, 437
TfiI	GAWTC	2 cut(s)	218, 383
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	186
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	2 cut(s)	184, 196
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	3 cut(s)	110, 132, 224
TspRI	CASTG	1 cut(s)	186
Vha464I	CTTAAG	1 cut(s)	329
XapI	RAATTY	1 cut(s)	228
XmnI	GAANNNNTTC	1 cut(s)	231
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.